mRNA_S-ischiensis_contig13.3068.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.3068.1
Unique NamemRNA_S-ischiensis_contig13.3068.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig13.3068.1 vs. uniprot
Match: A0A6H5KQA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 8.160e-6
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = -1 
Query:  273 RPTALLLNGPACFVAGRLVAFGGDGAACSXXXXXXXXXGLVSRGEVDAAVAEAAAAAGVSVHTVTSNREDVLLDALCGGXXXXXXXXAHAPRYDALIYNPAAFSSAG 593
            R + L+LNGPACF+AG L + G                    RG V +++ +AA    +S+   TSNRED LLD LC G             YDA++YNP+ FS+ G
Sbjct:  185 RRSVLVLNGPACFIAGTLASTGEP------------------RGAVASSMEDAAQEFNLSLTVCTSNREDELLDRLCEGG------------YDAVVYNPSGFSNQG 261
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BLAST of mRNA_S-ischiensis_contig13.3068.1 vs. uniprot
Match: D7G4H9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H9_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.920e-5
Identity = 40/107 (37.38%), Postives = 53/107 (49.53%), Query Frame = -1 
Query:  273 RPTALLLNGPACFVAGRLVAFGGDGAACSXXXXXXXXXGLVSRGEVDAAVAEAAAAAGVSVHTVTSNREDVLLDALCGGXXXXXXXXAHAPRYDALIYNPAAFSSAG 593
            R   L+LNGPACF+AG L + G                    RG V +++ +AA    +S+   TSNRED LLD LC G             YDA++YNP+ FS+ G
Sbjct:  187 RRPVLVLNGPACFIAGTLASTGEP------------------RGVVASSMEDAAQEFNLSLTVCTSNREDELLDRLCEGG------------YDAVVYNPSGFSNQG 263
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.3068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQA9_9PHAE8.160e-637.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4H9_ECTSI1.920e-537.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:2308054..2309786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1490
Cds size825
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.3068.1prot_S-ischiensis_contig13.3068.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 2308117..2308941 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.849542-UTR-S-ischiensis_contig13:2308053..23081161622815678.849542-UTR-S-ischiensis_contig13:2308053..2308116Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2308054..2308116 -
1695739845.633764-UTR-S-ischiensis_contig13:2308053..23081161695739845.633764-UTR-S-ischiensis_contig13:2308053..2308116Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2308054..2308116 -
1622815678.8717287-UTR-S-ischiensis_contig13:2308941..23093011622815678.8717287-UTR-S-ischiensis_contig13:2308941..2309301Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2308942..2309301 -
1695739845.6622474-UTR-S-ischiensis_contig13:2308941..23093011695739845.6622474-UTR-S-ischiensis_contig13:2308941..2309301Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2308942..2309301 -
1622815678.8839588-UTR-S-ischiensis_contig13:2309544..23097861622815678.8839588-UTR-S-ischiensis_contig13:2309544..2309786Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2309545..2309786 -
1695739845.6723738-UTR-S-ischiensis_contig13:2309544..23097861695739845.6723738-UTR-S-ischiensis_contig13:2309544..2309786Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2309545..2309786 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.8610148-CDS-S-ischiensis_contig13:2308116..23089411622815678.8610148-CDS-S-ischiensis_contig13:2308116..2308941Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2308117..2308941 -
1695739845.6494555-CDS-S-ischiensis_contig13:2308116..23089411695739845.6494555-CDS-S-ischiensis_contig13:2308116..2308941Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2308117..2308941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.3068.1

>prot_S-ischiensis_contig13.3068.1 ID=prot_S-ischiensis_contig13.3068.1|Name=mRNA_S-ischiensis_contig13.3068.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=275bp
MTALGCARGEWPLRLARDGPGPGLAAPRRWAPSLPQAGCLRRVRVLAARR
VGRRFRAKAWALGFGRSQMMVYQRGVDSDPRHSRGRPAFPGIVAARGADR
RVHPSRVRQVGQGEALPRCHWRRWRGQPLWSGRTLAAGGTHGGCALPGGR
GASISRRRIDVKVGAAQRPHEACNLSVQVLELTGQGRGGMGTVFAVRRAR
RTGHGPDAWCGRRTIDHCEGDNPQGPGEQGRAHSACPNTLRVGPGEERNC
AQRALPQNVAHKEGQWCGALRGLL*
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mRNA from alignment at S-ischiensis_contig13:2308054..2309786-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.3068.1 ID=mRNA_S-ischiensis_contig13.3068.1|Name=mRNA_S-ischiensis_contig13.3068.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1733bp|location=Sequence derived from alignment at S-ischiensis_contig13:2308054..2309786- (Schizocladia ischiensis KU_0333)
AGAGCTTCCGAGTCAGGCAGGATGCGGATGACGGGACAGGTACAGTGGGC
CAACGCGTACTCCACGGCCGCGCCACCCCCTGCCCACGCCCCCGGGGGCC
CAGCGAGGACGACACCTAGCCCCCCCGGCGGGCCCCCGGGCCTAGACCCC
GAGCCCCACGGGCCCGGCATGCAGACGTGCCGCCACCTGTCGCTTCTGTC
CGCCCTTCTTTCGTTGCAGAGCTCGCCGTAGCGGGGGCGGCGGCGGCGGC
GGCGGCCCTCCGGGCGGTGGTGGCGACGGCCCGGGCGCCCCAGGGCCGCT
GGCAGGCCATCATCATCATCATCATCGTCGTCGTCGTCGTCGTCCCCCGC
AGCGGCGCTGACACTACGGACGCCTTCCGGGTCGTGGACACGGCGCAGCC
TGGGGCCGTGTCCGCCGCGCCAGGCCCTGGCCCCGCCCCCGCCGCCGCCG
CCGCCGCCGCCGCCGCCGCCGCCCCGGGGGCTGAGCCCGCTCGCGGACCG
GACGCTGTAGCAGCTGCCGGCACTGGAAAAGGCGGCCGGGTTGTAGATGA
GCGCGTCGTACCGGGGAGCGTGAGCGCCGCCGCCGCCGCCGCCCCCGCCG
CCGCCGCAAAGCGCGTCCAGCAGCACGTCCTCCCGGTTGCTGGTGACGGT
GTGGACAGACACGCCGGCCGCCGCCGCCGCCTCCGCCACCGCGGCATCAA
CCTCCCCCCGCGAGACCAACCCCGGCCTCGCGGCGGCGGCGCCCGGGCCA
CTGCAGGCCGCACCGTCCCCGCCAAAGGCCACCAGCCGTCCCGCCACAAA
GCACGCGGGGCCGTTCAGGAGGAGGGCTGTGGGGCGAAGGTGGCCATGAC
GGCCCTGGGCTGCGCCAGGGGGGAGTGGCCGCTGAGGCTGGCCCGGGACG
GGCCGGGGCCCGGGCTTGCCGCCCCCCGCCGGTGGGCTCCAAGTCTGCCC
CAGGCCGGCTGTCTGCGGCGAGTCAGAGTCCTCGCAGCCCGGCGGGTGGG
CCGTCGATTCCGTGCCAAGGCATGGGCCCTGGGTTTTGGGCGCAGTCAGA
TGATGGTCTACCAGCGTGGCGTCGACAGCGACCCACGGCATAGCCGTGGC
AGGCCCGCCTTCCCTGGCATCGTGGCCGCCCGGGGGGCCGATCGCCGCGT
CCATCCGAGTCGGGTGAGGCAAGTCGGCCAAGGTGAGGCGCTCCCTCGCT
GCCATTGGCGGCGGTGGAGGGGGCAGCCGTTGTGGTCCGGGCGCACCCTC
GCGGCGGGCGGCACGCATGGTGGTTGCGCCCTCCCCGGGGGCCGGGGAGC
CTCGATCAGTAGGCGGCGAATCGACGTCAAAGTCGGGGCTGCCCAGCGGC
CCCACGAAGCCTGCAATCTCAGCGTTCAGGTCCTCGAGCTCACCGGCCAA
GGTAGAGGGGGAATGGGCACTGTCTTTGCCGTCCGGCGGGCCCGCCGCAC
TGGACATGGCCCGGATGCATGGTGCGGTAGGCGAACGATCGACCACTGCG
AGGGGGATAACCCGCAAGGCCCTGGGGAGCAGGGCCGTGCGCATTCCGCC
TGCCCCAACACGTTGAGAGTGGGCCCGGGTGAGGAGCGGAATTGCGCTCA
GAGAGCGCTTCCGCAGAACGTAGCGCACAAAGAAGGGCAGTGGTGTGGAG
CCTTGCGCGGTCTACTCTGAGGGGGTCTGGACAACGGCGTGCAAGCTCGC
AGCAGAGGTGCATCTGCACAGCTGAGCTGCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:2308054..2309786-

>mRNA_S-ischiensis_contig13.3068.1 ID=mRNA_S-ischiensis_contig13.3068.1|Name=mRNA_S-ischiensis_contig13.3068.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1650bp|location=Sequence derived from alignment at S-ischiensis_contig13:2308054..2309786- (Schizocladia ischiensis KU_0333)
ATGACGGCCCTGGGCTGCGCCAGGGGGGAGTGGCCGCTGAGGCTGGCCCG
GGACGGGCCGGGGCCCGGGCTTGCCGCCCCCCGCCGGTGGGCTCCAAGTC
TGCCCCAGGCCGGCTGTCTGCGGCGAGTCAGAGTCCTCGCAGCCCGGCGG
GTGGGCCGTCGATTCCGTGCCAAGGCATGGGCCCTGGGTTTTGGGCGCAG
TCAGATGATGGTCTACCAGCGTGGCGTCGACAGCGACCCACGGCATAGCC
GTGGCAGGCCCGCCTTCCCTGGCATCGTGGCCGCCCGGGGGGCCGATCGC
CGCGTCCATCCGAGTCGGGTGAGGCAAGTCGGCCAAGGTGAGGCGCTCCC
TCGCTGCCATTGGCGGCGGTGGAGGGGGCAGCCGTTGTGGTCCGGGCGCA
CCCTCGCGGCGGGCGGCACGCATGGTGGTTGCGCCCTCCCCGGGGGCCGG
GGAGCCTCGATCAGTAGGCGGCGAATCGACGTCAAAGTCGGGGCTGCCCA
GCGGCCCCACGAAGCCTGCAATCTCAGCGTTCAGGTCCTCGAGCTCACCG
GCCAAGGTAGAGGGGGAATGGGCACTGTCTTTGCCGTCCGGCGGGCCCGC
CGCACTGGACATGGCCCGGATGCATGGTGCGGTAGGCGAACGATCGACCA
CTGCGAGGGGGATAACCCGCAAGGCCCTGGGGAGCAGGGCCGTGCGCATT
CCGCCTGCCCCAACACGTTGAGAGTGGGCCCGGGTGAGGAGCGGAATTGC
GCTCAGAGAGCGCTTCCGCAGAACGTAGCGCACAAAGAAGGGCAGTGGTG
TGGAGCCTTGCGCGGTCTACTCTGAATGACGGCCCTGGGCTGCGCCAGGG
GGGAGTGGCCGCTGAGGCTGGCCCGGGACGGGCCGGGGCCCGGGCTTGCC
GCCCCCCGCCGGTGGGCTCCAAGTCTGCCCCAGGCCGGCTGTCTGCGGCG
AGTCAGAGTCCTCGCAGCCCGGCGGGTGGGCCGTCGATTCCGTGCCAAGG
CATGGGCCCTGGGTTTTGGGCGCAGTCAGATGATGGTCTACCAGCGTGGC
GTCGACAGCGACCCACGGCATAGCCGTGGCAGGCCCGCCTTCCCTGGCAT
CGTGGCCGCCCGGGGGGCCGATCGCCGCGTCCATCCGAGTCGGGTGAGGC
AAGTCGGCCAAGGTGAGGCGCTCCCTCGCTGCCATTGGCGGCGGTGGAGG
GGGCAGCCGTTGTGGTCCGGGCGCACCCTCGCGGCGGGCGGCACGCATGG
TGGTTGCGCCCTCCCCGGGGGCCGGGGAGCCTCGATCAGTAGGCGGCGAA
TCGACGTCAAAGTCGGGGCTGCCCAGCGGCCCCACGAAGCCTGCAATCTC
AGCGTTCAGGTCCTCGAGCTCACCGGCCAAGGTAGAGGGGGAATGGGCAC
TGTCTTTGCCGTCCGGCGGGCCCGCCGCACTGGACATGGCCCGGATGCAT
GGTGCGGTAGGCGAACGATCGACCACTGCGAGGGGGATAACCCGCAAGGC
CCTGGGGAGCAGGGCCGTGCGCATTCCGCCTGCCCCAACACGTTGAGAGT
GGGCCCGGGTGAGGAGCGGAATTGCGCTCAGAGAGCGCTTCCGCAGAACG
TAGCGCACAAAGAAGGGCAGTGGTGTGGAGCCTTGCGCGGTCTACTCTGA
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