mRNA_S-ischiensis_contig13.3067.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.3067.1
Unique NamemRNA_S-ischiensis_contig13.3067.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig13.3067.1 vs. uniprot
Match: D7FVL0_ECTSI (Putative transmembrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL0_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 9.240e-57
Identity = 112/232 (48.28%), Postives = 145/232 (62.50%), Query Frame = 3 
Query:  288 AAGRRDGTSASAGLKSVAEVLEFWFG-DMERYASSPEYKTLKDKQWWSG--LDEQFNRVQIASAALTSAAASGELSGEEWESPKGALARILVMDQFPRTVYRGTAEAFGSDEQAVKLAMACVSAGWDSSLG---TVQERMFCYMPLMHSESLEAQDMSVEVLTKLLEDASLQDDPESKKAVQFSRAHAMEHRDVVKRFGRFPHRNWLLGRESTAEEEAWLASEDLPPWAKSQ 965
            A G   G      LK+  +V++FWFG D+ R AS  EY      +W+     D+ F   Q AS  L + A SGEL GEEWE+ KGALAR+L++DQFPRTVYRGT++AF +DE A  L++  +S GWD+      T Q+R+F Y+PLMHSE +EAQD  V  +  L++D        +  A       A+EHR VV +FGRFPHRN  LGREST EE  WL+S+D+P WAKSQ
Sbjct:    2 ATGEGAGLGEILNLKTAQDVVDFWFGTDLARLASDKEYGQSFGAKWFGAGPPDQAFIGTQNASKELVAKAGSGELKGEEWETSKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEM----KATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQ 229
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BLAST of mRNA_S-ischiensis_contig13.3067.1 vs. uniprot
Match: A0A6H5KSE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE8_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.460e-55
Identity = 112/232 (48.28%), Postives = 146/232 (62.93%), Query Frame = 3 
Query:  288 AAGRRDGTSASAGLKSVAEVLEFWFG-DMERYASSPEYKTLKDKQWWS--GLDEQFNRVQIASAALTSAAASGELSGEEWESPKGALARILVMDQFPRTVYRGTAEAFGSDEQAVKLAMACVSAGWDSSLG---TVQERMFCYMPLMHSESLEAQDMSVEVLTKLLEDASLQDDPESKKAVQFSRAHAMEHRDVVKRFGRFPHRNWLLGRESTAEEEAWLASEDLPPWAKSQ 965
            A G + G+     LK+  +V++FWFG D+ R AS  EY      +W+     D+ F   Q AS  L + A SGEL GEEWE+PKGALAR+L++DQFPRTVYRGT++AF  DE A  L++  +S GWD+      T Q+R+F Y+PLMHSE +EAQD  V  +  L++D        +  A       A+EHR VV +FGRFPHRN  L REST EE  WL+S+D+P WAKSQ
Sbjct:   72 ATGEKAGSGEILNLKTAQDVVDFWFGTDLVRLASDREYGQSFGAKWFGVGPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFAHDETAASLSLEIISKGWDTVDARNYTFQQRLFVYLPLMHSERIEAQDACVSKVKALVDDEM----KATGSADSLVHDMALEHRGVVAKFGRFPHRNAALRRESTPEELQWLSSDDIPGWAKSQ 299
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BLAST of mRNA_S-ischiensis_contig13.3067.1 vs. uniprot
Match: A0A835Z6H1_9STRA (Putative transmembrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H1_9STRA)

HSP 1 Score: 159 bits (403), Expect = 3.430e-41
Identity = 96/218 (44.04%), Postives = 130/218 (59.63%), Query Frame = 3 
Query:  327 LKSVAEVLEFWFGD--MERYASSPEYKTLKDKQWWSGL-DEQFNRVQIASAALTSAAASGELSGEEWESPKGALARILVMDQFPRTVYRGTAEAFGSDEQAVKLAMACVSAGWDSSLGTVQERMFCYMPLMHSESLEAQDMSVEVLTKLLEDASLQDDPESKKAVQFSRAHAMEHRDVVKRFGRFPHRNWLLGRESTAEEEAWLASEDLPPWAKSQMP 971
            L  + +VL FWFGD      A SP  +  + K W+ G  DE+F+ +Q+ +  L   AA+G   G EW+ P+  LARI+V+DQF RT YR TA+AF  DE A  ++ A + AG D    T  ER+F Y+PLMHSE +E Q +    L K+     L+D       + F+ +H +    VV++FGRFPHRN  +GR ST EE AWLAS+ LP WA+SQ P
Sbjct:   10 LHLLQDVLTFWFGDDAAALTAGSPA-RGYRFKLWFGGANDERFDALQVEAKDLIQQAAAG---GPEWDGPRNTLARIIVLDQFSRTAYRATAQAFERDEMAADISAAAIDAGSDEQF-TPYERLFFYLPLMHSERMEYQRLC---LAKVTSTPGLED------CIAFANSHLV----VVEQFGRFPHRNAAMGRTSTPEELAWLASDKLPGWARSQAP 209
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BLAST of mRNA_S-ischiensis_contig13.3067.1 vs. uniprot
Match: A0A7R9UCH7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCH7_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.120e-39
Identity = 93/214 (43.46%), Postives = 123/214 (57.48%), Query Frame = 3 
Query:  339 AEVLEFWFGDM---ERYA-SSPEYKTLKDKQWWSGLDEQFNRVQIASAALTSAAASGELSGEEWESPKGALARILVMDQFPRTVYRGTAEAFGSDEQAVKLAMACVSAGWDS-SLGTVQERMFCYMPLMHSESLEAQDMSVEVLTKLLEDASLQDDPESKKAVQFSRAHAMEHRDVVKRFGRFPHRNWLLGRESTAEEEAWLASEDLPPWAKSQ 965
            A+VL FWFGD    +R A S P Y   ++ +WW G  E   + + + A L  AA +G+L GEEWE P G +AR+L+ DQ  R  +RGT EAF  DE A  L+M  +  G D   + T  ER F Y+ LMHSE+ E  ++ +      LE       PE +  V+F       H DV+KRFGR+PHRN  LGRE+T EE  +LA +DLP W +SQ
Sbjct:   39 ADVLRFWFGDEYFEDREALSRPGYMESQNDRWWMGGPEMDAQCE-SFADLVRAAGAGKLVGEEWEEPNGKVARVLLCDQIARGAFRGTTEAFAYDEVACGLSMQAIENGEDMPGILTFAERWFLYVALMHSENAETHELCLARFHSYLEHY-----PELEADVRFGIGFEEAHYDVIKRFGRYPHRNKALGRENTPEETEFLAQDDLPAWMRSQ 246
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BLAST of mRNA_S-ischiensis_contig13.3067.1 vs. uniprot
Match: A0A7R6SX76_9GAMM (Uncharacterized protein n=2 Tax=Neptunomonas TaxID=75687 RepID=A0A7R6SX76_9GAMM)

HSP 1 Score: 147 bits (372), Expect = 4.460e-37
Identity = 87/199 (43.72%), Postives = 118/199 (59.30%), Query Frame = 3 
Query:  336 VAEVLEFWFGDMERYASSPEYKTLKDKQWWSGLDEQFNRVQIASAALTSAAASGELSGEEWE-SPKGALARILVMDQFPRTVYRGTAEAFGSDEQAVKLAMACVSAGWDSSLGTVQERMFCYMPLMHSESLEAQDMSVEVLTKLLEDASLQDDPESKKAVQFSRAHAMEHRDVVKRFGRFPHRNWLLGRESTAEEEAWL 929
            + EVL+FWFGD+E         T ++  WW G  E    +     A  +AA  GEL G  W+ +P+G LA ++++DQF R +YRG AEAF  D     + +  +S G D +L    ERMF YMPL HSESL+ QD+ +  L  LL +  L++      A+ F    A +HRD++ RFGRFPHRN +LGRESTAEE A+L
Sbjct:    5 IDEVLQFWFGDLENGFPL----TNRESIWWQGGAELDREIDGLFGAKVNAALRGELDG--WKGTPRGRLALVILLDQFTRNMYRGMAEAFKGDHITRAIVLESLSCGHDDAL-EFAERMFFYMPLEHSESLQDQDLCISRLENLLTEVPLKERHRVDSAIDF----ASQHRDMIVRFGRFPHRNQVLGRESTAEELAYL 192
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BLAST of mRNA_S-ischiensis_contig13.3067.1 vs. uniprot
Match: UPI0019DD02EA (DUF924 domain-containing protein n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019DD02EA)

HSP 1 Score: 144 bits (362), Expect = 8.980e-36
Identity = 88/201 (43.78%), Postives = 125/201 (62.19%), Query Frame = 3 
Query:  336 VAEVLEFWFGDMERYASSPEYK-TLKDKQWWSGLDEQFNRVQIASAALTSAAASGELSGEEWES-PKGALARILVMDQFPRTVYRGTAEAFGSDEQAVKLAMACVSAGWDSSLGTVQERMFCYMPLMHSESLEAQDMSVEVLTKLL-EDASLQDDPESKKAVQFSRAHAMEHRDVVKRFGRFPHRNWLLGRESTAEEEAWL 929
            V  VL FWFGD     +SPE     + K W++  +E    ++     L + AA+GEL  + WE+ P+  LA +L++DQFPR ++R T  AF +DE+A+ +A   V  G+D  L  VQ R+F Y+PL HSE+LE Q  SV ++  L  EDA+L+D          +  +A+ HRDV++RFGRFPHRN +LGRESTAEE+ +L
Sbjct:    6 VQAVLNFWFGD----PASPESSYAQRRKLWFTKSEETDETIRQEFMPLYAQAATGEL--DSWETEPRSCLALLLILDQFPRNLFRDTPRAFATDEKALAIAKRAVDRGFDKELTLVQ-RLFMYLPLEHSENLEDQHRSVALVKTLKDEDAALED----------AYDYALRHRDVIQRFGRFPHRNAILGRESTAEEQDFL 189
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BLAST of mRNA_S-ischiensis_contig13.3067.1 vs. uniprot
Match: UPI001BFFFA0F (DUF924 family protein n=1 Tax=Cupriavidus sp. EM10 TaxID=2839983 RepID=UPI001BFFFA0F)

HSP 1 Score: 142 bits (359), Expect = 2.590e-35
Identity = 85/208 (40.87%), Postives = 129/208 (62.02%), Query Frame = 3 
Query:  312 SASAGLKSVAE-VLEFWFGDMERYASSPEYKTLKDKQWWSGLDEQFNRVQIASAALTSAAASGELSGEEWE-SPKGALARILVMDQFPRTVYRGTAEAFGSDEQAVKLAMACVSAGWDSSLGTVQERMFCYMPLMHSESLEAQDMSVEVLTKLLEDASLQDDPESKKAVQFSRAHAMEHRDVVKRFGRFPHRNWLLGRESTAEEEAWL 929
            S++  L + A+ VL+FWFG       SPE+   + +QW++  D+   R++     L  AA  G  + ++W  +P+GA ARI+++DQFPR ++RG A +F +D  A+ +A   ++ GWD  L T   R+FCY+P  H+ESL  QD+SV   T L +D + + D      V++    A++HR+++ RFGRFPHRN  LGRESTAEE A+L
Sbjct:    2 SSARPLPAAAQAVLDFWFGR----PGSPEWDVSR-RQWFAKSDDFDARIREQFLPLWQAAHDG--ANDDWSVTPEGACARIVLLDQFPRNMFRGDARSFATDAAALAVARRMLAEGWDRQLPTPWHRVFCYLPFEHAESLADQDISVHKTTALRDDTAGRVD-----VVEW----AVKHREIIARFGRFPHRNAALGRESTAEELAFL 193
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BLAST of mRNA_S-ischiensis_contig13.3067.1 vs. uniprot
Match: A0A1I2P1Z5_9GAMM (Uncharacterized conserved protein, DUF924 family n=1 Tax=Neptunomonas qingdaonensis TaxID=1045558 RepID=A0A1I2P1Z5_9GAMM)

HSP 1 Score: 142 bits (358), Expect = 3.650e-35
Identity = 84/199 (42.21%), Postives = 118/199 (59.30%), Query Frame = 3 
Query:  336 VAEVLEFWFGDMERYASSPEYKTLKDKQWWSGLDEQFNRVQIASAALTSAAASGELSGEEW-ESPKGALARILVMDQFPRTVYRGTAEAFGSDEQAVKLAMACVSAGWDSSLGTVQERMFCYMPLMHSESLEAQDMSVEVLTKLLEDASLQDDPESKKAVQFSRAHAMEHRDVVKRFGRFPHRNWLLGRESTAEEEAWL 929
            + EVL+FWFGD+       + + +    WW G  E    +     A  +AA  GEL+  EW ++P+G LA ++++DQF R +YRG AEAF  D+ A  + +  +    D +L    ER+F YMPL H+ESL+ QD+ +  L  LL D  L+D      A+ F    A +HRD++ RFGRFPHRN +LGRESTAEE A+L
Sbjct:    5 IDEVLQFWFGDLVGGFPVNDRENI----WWKGGAELDREIDALFGARVNAALRGELN--EWRQTPRGRLAMVVLLDQFTRNMYRGMAEAFKGDDIARSIVLESLEHQHDEAL-EFAERIFFYMPLEHTESLDMQDLCISRLESLLLDVPLKDRHRVHSAIDF----ASQHRDMIVRFGRFPHRNQVLGRESTAEELAYL 192
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BLAST of mRNA_S-ischiensis_contig13.3067.1 vs. uniprot
Match: UPI00196A8BBE (DUF924 family protein n=1 Tax=Amphritea spongicola TaxID=707589 RepID=UPI00196A8BBE)

HSP 1 Score: 142 bits (358), Expect = 3.650e-35
Identity = 81/201 (40.30%), Postives = 119/201 (59.20%), Query Frame = 3 
Query:  330 KSVAEVLEFWFGDMERYASSPEYKTLKDKQWWSGLDEQFNRVQIASAALTSAAASGELSGEEW-ESPKGALARILVMDQFPRTVYRGTAEAFGSDEQAVKLAMACVSAGWDSSLGTVQERMFCYMPLMHSESLEAQDMSVEVLTKLLEDASLQDDPESKKAVQFSRAHAMEHRDVVKRFGRFPHRNWLLGRESTAEEEAWL 929
            + + E+L FWFGD+    ++P+ K L    WW G +E    ++ A       A +GEL  ++W   P+G LA I+++DQF R +YRG+AEAF  D +A  L+   +  G D +L  + E++F YMPL H+ESLE QD  +  L  L  +  ++       A+ F    A EHR+++ RFGRFP+RN +LGREST EE A+L
Sbjct:    3 EKIEEILHFWFGDLYDGLATPDRKKL----WWYGGEEVDGLIRDAFGQRVRQALAGEL--DDWARQPRGRLALIILLDQFSRNIYRGSAEAFSGDSKAAALSKEGIELGHDRAL-ELSEKLFFYMPLEHAESLEEQDQHISCLESLFGEMGIEHRQVLDNALDF----AHEHRELIARFGRFPYRNAVLGRESTPEELAYL 192
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BLAST of mRNA_S-ischiensis_contig13.3067.1 vs. uniprot
Match: UPI00037E9798 (DUF924 domain-containing protein n=1 Tax=Marinobacterium rhizophilum TaxID=420402 RepID=UPI00037E9798)

HSP 1 Score: 142 bits (358), Expect = 3.650e-35
Identity = 84/201 (41.79%), Postives = 118/201 (58.71%), Query Frame = 3 
Query:  330 KSVAEVLEFWFGDMERYASSPEYKTLKDKQWWSGLDEQFNRVQIASAALTSAAASGELSGEEW-ESPKGALARILVMDQFPRTVYRGTAEAFGSDEQAVKLAMACVSAGWDSSLGTVQERMFCYMPLMHSESLEAQDMSVEVLTKLLEDASLQDDPESKKAVQFSRAHAMEHRDVVKRFGRFPHRNWLLGRESTAEEEAWL 929
            + + EVL FWFG +    +       K + WW G +E   ++      L   A  GEL  + W  SP+G LA IL++DQF R++YRGTA+AFG DEQA++     +  G D +L T  ER+F YMPL H+ESLEAQ++ +  L  L +  +       +  V+ +   A +HRD++ RFGRFPHRN  LGR STA+E A+L
Sbjct:    3 EKIEEVLLFWFGPLHNGVACES----KQRLWWEGREEDDRQLDELFGNLVRRAVRGEL--QAWASSPRGRLALILLLDQFSRSIYRGTADAFGGDEQALERCRQGIDLGHDLALETA-ERLFFYMPLEHAESLEAQNLHIAQLESLRQGLN----GAQRGLVENALGFAHQHRDLIMRFGRFPHRNDALGRASTAQELAYL 192
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.3067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVL0_ECTSI9.240e-5748.28Putative transmembrane protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KSE8_9PHAE1.460e-5548.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6H1_9STRA3.430e-4144.04Putative transmembrane protein n=1 Tax=Tribonema m... [more]
A0A7R9UCH7_9STRA4.120e-3943.46Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R6SX76_9GAMM4.460e-3743.72Uncharacterized protein n=2 Tax=Neptunomonas TaxID... [more]
UPI0019DD02EA8.980e-3643.78DUF924 domain-containing protein n=1 Tax=filamento... [more]
UPI001BFFFA0F2.590e-3540.87DUF924 family protein n=1 Tax=Cupriavidus sp. EM10... [more]
A0A1I2P1Z5_9GAMM3.650e-3542.21Uncharacterized conserved protein, DUF924 family n... [more]
UPI00196A8BBE3.650e-3540.30DUF924 family protein n=1 Tax=Amphritea spongicola... [more]
UPI00037E97983.650e-3541.79DUF924 domain-containing protein n=1 Tax=Marinobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:2300549..2306357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue1.3e-44
Seed eggNOG ortholog2880.D7FVL0
EggNOG free text desc.Bacterial protein of unknown function (DUF924)
EggNOG OGs2S80R@2759,COG3803@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size2234
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.3067.1prot_S-ischiensis_contig13.3067.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 2301055..2305115 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.485452-UTR-S-ischiensis_contig13:2300548..23008921622815693.485452-UTR-S-ischiensis_contig13:2300548..2300892Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2300549..2300892 +
1695739856.1050684-UTR-S-ischiensis_contig13:2300548..23008921695739856.1050684-UTR-S-ischiensis_contig13:2300548..2300892Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2300549..2300892 +
1622815693.499086-UTR-S-ischiensis_contig13:2301030..23010541622815693.499086-UTR-S-ischiensis_contig13:2301030..2301054Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2301031..2301054 +
1695739856.117455-UTR-S-ischiensis_contig13:2301030..23010541695739856.117455-UTR-S-ischiensis_contig13:2301030..2301054Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2301031..2301054 +
1622815693.5651138-UTR-S-ischiensis_contig13:2305115..23063571622815693.5651138-UTR-S-ischiensis_contig13:2305115..2306357Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2305116..2306357 +
1695739856.1826434-UTR-S-ischiensis_contig13:2305115..23063571695739856.1826434-UTR-S-ischiensis_contig13:2305115..2306357Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2305116..2306357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.5099428-CDS-S-ischiensis_contig13:2301054..23011791622815693.5099428-CDS-S-ischiensis_contig13:2301054..2301179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2301055..2301179 +
1695739856.1280398-CDS-S-ischiensis_contig13:2301054..23011791695739856.1280398-CDS-S-ischiensis_contig13:2301054..2301179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2301055..2301179 +
1622815693.5202324-CDS-S-ischiensis_contig13:2302702..23027921622815693.5202324-CDS-S-ischiensis_contig13:2302702..2302792Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2302703..2302792 +
1695739856.1365678-CDS-S-ischiensis_contig13:2302702..23027921695739856.1365678-CDS-S-ischiensis_contig13:2302702..2302792Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2302703..2302792 +
1622815693.5317523-CDS-S-ischiensis_contig13:2303517..23036681622815693.5317523-CDS-S-ischiensis_contig13:2303517..2303668Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2303518..2303668 +
1695739856.145906-CDS-S-ischiensis_contig13:2303517..23036681695739856.145906-CDS-S-ischiensis_contig13:2303517..2303668Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2303518..2303668 +
1622815693.5411105-CDS-S-ischiensis_contig13:2304208..23043421622815693.5411105-CDS-S-ischiensis_contig13:2304208..2304342Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2304209..2304342 +
1695739856.157844-CDS-S-ischiensis_contig13:2304208..23043421695739856.157844-CDS-S-ischiensis_contig13:2304208..2304342Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2304209..2304342 +
1622815693.550654-CDS-S-ischiensis_contig13:2304991..23051151622815693.550654-CDS-S-ischiensis_contig13:2304991..2305115Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2304992..2305115 +
1695739856.171851-CDS-S-ischiensis_contig13:2304991..23051151695739856.171851-CDS-S-ischiensis_contig13:2304991..2305115Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2304992..2305115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.3067.1

>prot_S-ischiensis_contig13.3067.1 ID=prot_S-ischiensis_contig13.3067.1|Name=mRNA_S-ischiensis_contig13.3067.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=208bp
MERYASSPEYKTLKDKQWWSGLDEQFNRVQIASAALTSAAASGELSGEEW
ESPKGALARILVMDQFPRTVYRGTAEAFGSDEQAVKLAMACVSAGWDSSL
GTVQERMFCYMPLMHSESLEAQDMSVEVLTKLLEDASLQDDPESKKAVQF
SRAHAMEHRDVVKRFGRFPHRNWLLGRESTAEEEAWLASEDLPPWAKSQM
PAAAAAT*
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mRNA from alignment at S-ischiensis_contig13:2300549..2306357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.3067.1 ID=mRNA_S-ischiensis_contig13.3067.1|Name=mRNA_S-ischiensis_contig13.3067.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5809bp|location=Sequence derived from alignment at S-ischiensis_contig13:2300549..2306357+ (Schizocladia ischiensis KU_0333)
CGGCCCGGTGTTGGCTGGACGGCGCCGTCTGCGTGGGCGGTCGCGGGCGG
ACATGTCAGGTGCCGTTGCCCCCGGAGAATTGGCCACCCAAGAAGCTACA
GTTGGAACTGGTCTAGTTTGCTGTATTTGGGAGGACAGCGCTGCCAGTTG
CCGCGGGAGATTCGGGCACCAACGAAGCTTGCACCGTTGTACAGGGCTCG
GCTCCGACATCTTTGCCCGAACAAGTGCAAGTCGAAGTACAATACAAGTT
GTCCTTGCTCATCCCCTCGTGCAGGCTCTTCGACACCGCGGCGGGGCGGC
GTGATGGAACTTCTGCGTCTGCAGGCCTCAAGTCGGTGGCAGAGGTCAGT
TAGGAGATTGTTGGTCAGTGATCTGAACTGGCTGTGGTGGCTGCCGTTGA
GTGACGAGGCAAGAGGCATGTCCCTCGCCTCGACCCCGTCGGCAACGCTA
GGCTCTCTGCTTTGGGACGAAATGTGCGACAGGTCCTGGAATTCTGGTTT
GGGGACATGGAGCGCTATGCCAGCAGCCCAGAGTACAAGACATTGAAGGA
CAAGCAGTGGTGGTCCGGGCTGGACGAGCAATTCAACCGGGTGCAGATAG
CATCCGCCGCTCTCACCTCTGCGGCAGCCAGGTGCGATGTCGCGTTCTTG
TGCTCCCAGCACCTTGATGCAGGCGAGTTGGGCTAGCAGGAACTAAGCCT
CCCAAGTAGTAGGAACTCTTCCCTGGACTGCTACTCCACAGTGTTGTATG
CTACAGTACTGTACTGTAGTACAAGTACGAGTACACACTTGGTAAGTGTG
CCAAGATATTGCAACATGCGATGGACGCGTGGGGCGCAGTGGCCGCTGCC
GAAGCCGCACGACCGCCAGCGGCACTTCATTGGTTACACATCTCACTTGG
CCTACCAGAGTGCGTCCCAAGACGTGCCCATTGCAGATACTGCAGAGCCC
CCGAGTTTTGTACGAGTACAAGTACTCATACTCGAAGTACTTTTTTTGGC
CTCACTCGGCTACCAGGCGGTGTCGATTAATATATATATATATATGTAGA
TGTGCTCACGTGGTGCTTGCCGCAATATCGATTAACGCGTATGCAATGCT
TGTAGAGATGTTCACTACCTTCCCCTCACGCAACCCTTCCCTGGTGAGCT
AAGTAAGTGCCGCTGTTGAGATCCTTTGGAGACGTGGCCTGCACCTCGCC
CTGTGTTGTTCTTTTTAACCCTTTTACCCCTGGGGTCCGTGTAATCATAG
GATTTTCGTGTGCAAGTCCAATTTAGCAGGGGTAGAAGGGTGAATACTGC
AACCTGCAGAGGTGGGCGGTCCCCGCCGGTTAAGTACTGTTGGGCTGCCC
AAGGTCAGGCGGAAGCATTGCAAACACCTTGGGGGGGCCAGCCCGGCTTG
GCAGCAGACTTTCCCAGGGGGGGCGGGGGTCCCCAGGGCGCTGAGCGCAG
GTGGTCGTGTTCCCTGAGAGTTTGTCTTGGTGGTGCATGGCGCGAGTACT
CAGTAGTAAGTTAGACAGTAGTGAACTGGCAAGGTCTGAGAGTACCAGTT
TAACTCCTAGCCGGTCGTGTGACCGGTCGGTTTTACGTAGCCGGTTGTCG
GGAACGGCTTACGTATTGCCAAAATCAATGAATAACGGTAATGTTGCCCG
CTCTGGCTGCACGATTGGCCACCGGTCGGTTGACCGGTTGAACCGGTTAA
CTGGCACCGACCGGTAATAACCGGCACCAGTTCACAACACTCCACTACTC
GGAATTTGCGGCTTCCTAACTTGGCCTAGCTCTAGCTCGCGAAGGCGCTT
GCTCCACTCCCCCTCTGACGTGATCATGTGTGTGCCATGTCTTCTGTCTC
CCCCCCAACACACACACACACTCCCCCCTTTTCCTCCCCCCCCTCCCTGT
CCCTCCCCCCCTCCTCTCCCCCTCCCTGTCCCTCTCTCCCCCCTTCCTCT
CCCTCTTCTCCCTCTCCAACTACCCCTCTCTCCCCCCCTTCCCACCCCTC
CCCCCTCTTTGCGCCGCTCTCTCCTCCTGTCTGACCTGCAACAGCGGAGA
GCTTTCCTTCCTCTCCTACTAAGTTACCCCTCCCACTGTCGCGTCTCCTT
CCCCCTCCTCCCCCCCCCTCCCCCCTCTCTCTTCTCTTGTCTGGCCTGGA
ACAGTGGCGAGCTTTCCGGGGAGGAGTGGGAGTCCCCCAAGGGGGCGCTA
GCCCGGATTCTGGTCATGGACCAGTTCCCCCGTACCGTGTACAGGTGAGG
CACACAAAGGATGCCTTTGTCTGTTTCTTCTTTGCTTGATTTTTATGGTC
ATGGACGGGCACCCCAGGTATGCATTTACGAGTGGTCGACACATGCCACG
AATTGGCCGTAGTGTCAGGGGCACATTTACGAGTGGTTGACTCATGCCCC
GAATTGGCGGTAATGTCACGGGCACATTTGCGAGTGGTCGACTCATGCCC
CGAATTGGCGGCAATGTCAGGGGCACCACGGGGGCGTTTGGGAGCGACGC
GCAGGCGGTGGCGTTGCTACCTACTTGGATTTTGTGTTGGTCAAGCTATC
GAATATCGACTATCGATAGATATATACTTCTAGGTCAGTCCTGTCGATAA
ATAGATTGATTTGCCTAGATAATCCGTCGCTGTTGGCGGTAATGTCAGGG
GCGCCGCGGAGGCGTTTGGGAGCGACGAGCAGGCGGTGGCGTTACAAACT
ACTTGGATTTAGTGCAGGTCAGGCTATCGAATGTCGACTATCGATAGATA
CCATGTATATAGCCCCTGCATTGCCCCTGTCAGTGGCTTCTTTTCTTGAT
TTTTTTGCCCTGCGGGTGTGAAGGGCTTCTGGTGAGGTCCCTGCCTTGGG
TTGTTGGGACGGGGCCCGGAACTCACATGCCATCCAAATAGTTTAAAATC
GGTACCGTCGATAAATAGATTGATTTGCTTACAAGTAGATATTCCGTCAC
TGTTTGTCGGTAATGTCAGGGGCACAGCGGAGGCGTTTGGGAGCGACGAG
CAGGCGGTGAAGCTGGCCATGGCGTGCGTGTCGGCGGGCTGGGACTCCTC
CCTGGGGACGGTGCAGGAGAGGATGTTCTGCTACATGCCGCTCATGCACT
CAGAGTCCCTGGAGGCGCAGGTGAGGGACACAGATGCGTCTTTATCTTTC
TTAACCCTTTTGCCCCTGGTACATTGGACTTCCACGCTAAACCCCTATGA
CTATACGGACCCCAGGGGTAAAAGGGTTAGCCCCGCCACTTGTTGGAACC
ATCCGAGTAGTTGAGGAGGAGTCTGAAAGAAACCAAGTGTTCTGCTACAT
GCCGCTCATGCACGCAGAGCCGATGGAGGCACAGGTAGAGGGTGTGCGTC
TTTATCTTTAACCCTTTTACCCCTGGGGTCCTTATAATCATAGTGTTTTA
GTGTGTAAGTCCAATTTAGCAGGGGTGAAAGGGCTAGCCCCGCCGTTTGT
TGGAAACACCCAAGTAGTTGAGGAGAAGGAGTTTGAAAGAAACCAAGTGC
TTGTACTGTAGCAGTTAGGAAGCGAGCTACAATCTCACGTGTGTGAGATT
GGGTGTTGTCGTGCTACTGTAGTAGTTGTCCCATTTAAGAATTGGGCGTT
CTTGTATTGCTGTACTGTAGTGATTTATCACATTTTTGTGTGACGACTCT
GCCGTGGCAGGACATGTCCGTGGAGGTTTTGACCAAGCTGCTGGAGGACG
CCAGCCTCCAAGACGACCCAGAATCCAAGAAGGCGGTGCAGTTCAGCCGG
GCGCATGCTATGGAACACCGGGACGTGGTCAAACGCTTCGGAAGGTACAG
CACTACTAGCAGTATTAACAGGAACAATACGGGGCGAGGTGCGGGCCACG
TCACTAGAGACCTCAGCAGTGGCCCTTCCTTATAGCTCGCCAGGCAAAAT
TTGTGTGTACTGTAGTAGTACTGCAGTCTACCCGTGTGTGACGAGTACGA
GTACGTGAGTGTGGCAGCATGCAGTCGACGGAGACTGTGTGAGTGTGTAG
GCACAAGTGCAGTGATATCGCGCTTCATTTCATAGAAAAACACGTACTGA
CTCAAGTGCTTGGAATCACTGTGCAGCGCTTTGGGAGGTACAGTACCAGT
AGGTACTACTGTAGTTGCTGCACTGTGCTGTTGCCTATGCGATTGGTGGG
TGAGTACCTATGTCAGTATGTGCTGCGTTCTTAGATTTTCAGTTTTTGGA
GCAAACGGCCAACGTGCGCACAAAGTTTCTCGGGCTACCGTGGGTGGTTT
CGGGCGTTTGGTCTTGCTGTGTGCATTCGCTGTGTGGGCAGCCGGCCCTT
TTAGGGCCTCAGTCGCCGAGCAAAACGCGTGATGGCGATTTCTTGGGCTG
CAATTGGCCGATTGCGGTGCTTCCACATGCGTTCTCTGCACTCTGCAAAC
CTGCGGTTTCGCCGTCCCTCTGCCGACCGACTCGCTCGTTCAGGTTCCCT
CACCGCAACTGGCTCTTGGGCAGAGAGTCCACAGCGGAGGAGGAGGCGTG
GCTGGCGTCGGAAGACCTTCCCCCGTGGGCAAAGAGCCAAATGCCGGCGG
CCGCGGCCGCAACCTAGGTGCACCCCTCACGTGGCAAAAACTCGGAGAGC
AAGTGCAATGTGATGTTATGTGCACTCTAAAGTGCCATAGTTTGACATCA
TGCCACATCACATCACGTCGACTGGCGGGCAAGCAAGCAAGTGTTTGCCC
AGTTTCCCCCATTTGCTTTTTTTTGCCGCCCCCTGCAGTGTGGAGGCGTG
CCGAAGGGCGCGTAGCGGCAGAAGTGCGGAGTAGATTGGGAGCAGTACGG
GAAGCCTACACGACGCCAGTGTACTTGAATGTAGTGCCGCACGCAGGCCC
CTATTGTAGAAGCGTCATGAGCCCATTCTTACACGGTGAGCCGGATTCGT
CGGCCGCGGGCCGCGAGGTTAAAGCTCCCTAGTTTTCGAAGAAGCTTTTA
ATGTTTTTAGTGTTTCGCCTGCTTGGTTTCCCCCGCGGGCCAGCGAACCC
GCGGGACAACAATTACTCATGGCAGTACAAAGCACTTGGGGCATTGCTAG
ATTTGTTCTACTGGCCGCAGCAGCGCGTGCGCAGTGTACCCCATTTATGT
AGGCCAACACGGTACAACAGTGGCAGGCTGGGCCCGTTTAGCAAGGGTTT
TGCGCTTTGCTACTGTTTTTTGCAAGAGGACAAACAAATGAGCGGGAGAG
AAGAGGTGTCACCGCATACGCGAGTTCAGGGCCCCGCCCCCGGAAGCCCT
TCCTTCATCCGCCTTCACTCGCAGAACTGCAGGAGAGCGCTACGCAGCCA
ATGACAAAATGATGTGTTTGTTGGCCGTTCCTGTCGACTCTCCCTGGGCC
TTGCGGCCGCAACACTCGATTGGCACTGCAACTGTGCTGCAACTGTATAC
CGTGTTCATCGGAGAGATCTTGCTGTCATGTACTTCCATGAAGTACGAGT
ACTCGTACTTCGAAGTACATCCTACCAAGTACTTCTAGTATATATGTACT
GTACTTCGAAGCAGATCCGGAAGTATATTATAATTCGTTTGCTGTGTATG
TACTCATGTTGCGCTTGCCGCCGTCCCGAGACAGTTCTGTCCCAAATATC
CAAGTCCGAGTACAGTAGTTAATGAGAATGGGTTTCAAACAACTCAAGTA
GTTGTGAGAATATGACTGAGTGTATACCAGGTATGTATATATACGTATGT
GTACTGACGTTGCGCTTGCCGTAGTCCCCAGACCATTGACCACTTCTGCA
GAAATTCGGCCGTATGCAAAAATTCGCGGCATTGCAGGAAATGGGGCTGA
AGCGTGCTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:2300549..2306357+

>mRNA_S-ischiensis_contig13.3067.1 ID=mRNA_S-ischiensis_contig13.3067.1|Name=mRNA_S-ischiensis_contig13.3067.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1248bp|location=Sequence derived from alignment at S-ischiensis_contig13:2300549..2306357+ (Schizocladia ischiensis KU_0333)
ATGGAGCGCTATGCCAGCAGCCCAGAGTACAAGACATTGAAGGACAAGCA
GTGGTGGTCCGGGCTGGACGAGCAATTCAACCGGGTGCAGATAGCATCCG
CCGCTCTCACCTCTGCGGCAGCCAGATGGAGCGCTATGCCAGCAGCCCAG
AGTACAAGACATTGAAGGACAAGCAGTGGTGGTCCGGGCTGGACGAGCAA
TTCAACCGGGTGCAGATAGCATCCGCCGCTCTCACCTCTGCGGCAGCCAG
TGGCGAGCTTTCCGGGGAGGAGTGGGAGTCCCCCAAGGGGGCGCTAGCCC
GGATTCTGGTCATGGACCAGTTCCCCCGTACCGTGTACAGTGGCGAGCTT
TCCGGGGAGGAGTGGGAGTCCCCCAAGGGGGCGCTAGCCCGGATTCTGGT
CATGGACCAGTTCCCCCGTACCGTGTACAGGGGCACAGCGGAGGCGTTTG
GGAGCGACGAGCAGGCGGTGAAGCTGGCCATGGCGTGCGTGTCGGCGGGC
TGGGACTCCTCCCTGGGGACGGTGCAGGAGAGGATGTTCTGCTACATGCC
GCTCATGCACTCAGAGTCCCTGGAGGCGCAGGGGCACAGCGGAGGCGTTT
GGGAGCGACGAGCAGGCGGTGAAGCTGGCCATGGCGTGCGTGTCGGCGGG
CTGGGACTCCTCCCTGGGGACGGTGCAGGAGAGGATGTTCTGCTACATGC
CGCTCATGCACTCAGAGTCCCTGGAGGCGCAGGACATGTCCGTGGAGGTT
TTGACCAAGCTGCTGGAGGACGCCAGCCTCCAAGACGACCCAGAATCCAA
GAAGGCGGTGCAGTTCAGCCGGGCGCATGCTATGGAACACCGGGACGTGG
TCAAACGCTTCGGAAGGACATGTCCGTGGAGGTTTTGACCAAGCTGCTGG
AGGACGCCAGCCTCCAAGACGACCCAGAATCCAAGAAGGCGGTGCAGTTC
AGCCGGGCGCATGCTATGGAACACCGGGACGTGGTCAAACGCTTCGGAAG
GTTCCCTCACCGCAACTGGCTCTTGGGCAGAGAGTCCACAGCGGAGGAGG
AGGCGTGGCTGGCGTCGGAAGACCTTCCCCCGTGGGCAAAGAGCCAAATG
CCGGCGGCCGCGGCCGCAACCTAGGTTCCCTCACCGCAACTGGCTCTTGG
GCAGAGAGTCCACAGCGGAGGAGGAGGCGTGGCTGGCGTCGGAAGACCTT
CCCCCGTGGGCAAAGAGCCAAATGCCGGCGGCCGCGGCCGCAACCTAG
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