mRNA_S-ischiensis_contig13.3037.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.3037.1
Unique NamemRNA_S-ischiensis_contig13.3037.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig13.3037.1 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 5.770e-75
Identity = 136/277 (49.10%), Postives = 186/277 (67.15%), Query Frame = 3 
Query:  258 ISMSENDEPDFLDVADRILGGMSYRDAAMGTAFDGLSHEEEERFEEADRRLQALRRGELEEYLLSVGEHDMVEELQLAEEKRREAIRKLEKTEED---------QEEGTVNVTRGHWNELVVTTDRVQKVIKGGMIVSFRALVVVGNEQGMGGYAIGKASGPNEALEIASRKAKNPKNLLYVERYKKATLVHDVVGKHNNTKVYIWARPPGRGTVAGSLLKEIFTMMGISDASARIIGPRNPYSVVHAIFNALSQHESLEDIALKRGKRILSLNRVL 1061
            +SM++ D+PD +D+AD I+ G SY +A  GT FD L  E  + FEE+ RRL ALR   LEEYL   GE D++++++        AI    +T E          +++ TV + +G W E++V TDRV K +KGGM + +RALV VGN  G+GG+AIGKA  P  A+  ASRKAK   NL+YVERYK+A+L  D+VGKHN +KVYIW+RPPG G  AG L ++I   MGI+D + +IIG RN YS+++A+F+AL++H  +E IA  RGKRILSL R +
Sbjct:   97 VSMTDKDKPDVVDLADLIMSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVR--------AIYGEPETSEQTDGPAPPKKKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREM 365
[Close]
BLAST of mRNA_S-ischiensis_contig13.3037.1 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 1.820e-70
Identity = 143/315 (45.40%), Postives = 197/315 (62.54%), Query Frame = 3 
Query:  156 LLDAEDGRG------GDAKQGGVGRDERADGSPSLPRLPPISMSENDEPDFLDVADRILGGMSYRDAAMGTAFDGLSHEEEERFEEADRRLQALRRGELEEYLLSVGEHDMVEELQLAEEKRREAIRKLEKTEED-------QEEGTVNVTRGHWNELVVTTDRVQKVIKGGMIVSFRALVVVGNEQGMGGYAIGKASGPNEALEIASRKAKNPKNLLYVERYKKATLVHDVVGKHNNTKVYIWARPPGRGTVAGSLLKEIFTMMGISDASARIIGPRNPYSVVHAIFNALSQHESLEDIALKRGKRILSLNRVL 1061
            LLD  D RG         K+G  G  + +   P+  R   +SM++ D+PD +D+AD I+ G SY +A  GT FD L  E  + FEE+ RRL ALR   LEEYL   GE D++++++        AI    +T E        +++ TV + +G W E++V TDRV K +KGGM + +RALV VGN  G+GG+AIGKA  P  A+  ASRKAK   NL+YVERYK+A+L  D+VGKHN +KVYIW+R       AG L ++I   MGI+D + +IIG RN YS+++A+F+AL++H  +E IA  RGKRILSL R +
Sbjct:    2 LLDRGDKRGESHNVDNGGKEGDTGSADES--KPASVRS--VSMTDKDKPDVVDLADLIMSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVR--------AIYGEPETSEQTDGPAPPKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSR-------AGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREM 297
[Close]
BLAST of mRNA_S-ischiensis_contig13.3037.1 vs. uniprot
Match: F0Y2H1_AURAN (S5 DRBM domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2H1_AURAN)

HSP 1 Score: 154 bits (390), Expect = 2.280e-41
Identity = 81/163 (49.69%), Postives = 108/163 (66.26%), Query Frame = 3 
Query:  573 GHWNELVVTTDRVQKVIKGGMIVSFRALVVVGNEQGMGGYAIGKASGPNEALEIASRKAKNPKNLLYVERYKKATLVHDVVGKHNNTKVYIWARPPGRGTVAGSLLKEIFTMMGISDASARIIGPRNPYSVVHAIFNALSQHESLEDIALKRGKRILSLNRVL 1061
            G W E +V  DRVQKV++GG I+ +RALV VGN  G GG+A GK   P +A+  ASR+AK   +L +V+R++   L HDV GKHNN  V I+A PPG+G V G+L + I T +G S  + +  G R+PYS V A F+AL+   S+EDIA KRG+RIL +   L
Sbjct:   43 GRWAETIVKIDRVQKVVRGGTIMRYRALVAVGNLMGAGGFAFGKGHSPQDAVARASRRAKT--DLRFVDRHRDVALAHDVRGKHNNCTVDIYAVPPGKGMVGGALGRAIMTQLGFSSFTIKARGRRSPYSYVAATFDALANLASVEDIARKRGRRILEIEHAL 203
[Close]
BLAST of mRNA_S-ischiensis_contig13.3037.1 vs. uniprot
Match: A0A7S2SS45_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS45_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.700e-40
Identity = 83/159 (52.20%), Postives = 107/159 (67.30%), Query Frame = 3 
Query:  573 GHWNELVVTTDRVQKVIKGGMIVSFRALVVVGNEQGMGGYAIGKASGPNEALEIASRKAKNPKNLLYVERYKKATLVHDVVGKHNNTKVYIWARPPGRGTVAGSLLKEIFTMMGISDASARIIGPRNPYSVVHAIFNALSQHESLEDIALKRGKRILSL 1049
            G W E +V  DRVQKVIKGGMI+S+R LVVVGN  G+GG+ +GKA    E++    R+AK  KNL+ V+RYK   LVH V G+HNN KV + A PPG G   G   + I   MGI+D +A+  G R P SVV AIF AL++H+SL+ I+  RG+RIL +
Sbjct:  217 GRWAETIVRADRVQKVIKGGMIMSYRTLVVVGNGHGVGGFGVGKAQDAAESVARGIRQAK--KNLVVVDRYKNTALVHTVEGRHNNCKVVLRAVPPGYGFKGGRTAQAILQQMGIADCTAKAYGRRTPASVVQAIFKALARHKSLDQISRSRGRRILEM 373
[Close]
BLAST of mRNA_S-ischiensis_contig13.3037.1 vs. uniprot
Match: A0A7S3ZVY7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVY7_9STRA)

HSP 1 Score: 152 bits (384), Expect = 7.890e-39
Identity = 79/162 (48.77%), Postives = 108/162 (66.67%), Query Frame = 3 
Query:  573 GHWNELVVTTDRVQKVIKGGMIVSFRALVVVGNEQGMGGYAIGKASGPNEALEIASRKAKNPKNLLYVERYKKATLVHDVVGKHNNTKVYIWARPPGRGTVAGSLLKEIFTMMGISDASARIIGPRNPYSVVHAIFNALSQHESLEDIALKRGKRILSLNRV 1058
            G W E +V  +RVQKV++GG I+ +RALVVVGN  G GG+A GK   P +A+  AS+ AK  ++L +VER++  +L+HDV GKHNN  V I+A+PPG G V G L + I T +G S  + +  G R PYS   A F+ALS+H S+E+IA  RG+RIL +   
Sbjct:  187 GKWAETIVKINRVQKVVRGGTIMRYRALVVVGNLMGAGGFAYGKGHSPRDAVARASKAAK--RDLRFVERFRDTSLLHDVRGKHNNCIVDIYAKPPGSGIVGGPLGRRILTQLGFSSFTIKARGRRTPYSYCAAAFDALSKHRSVEEIARSRGRRILEIEHA 346
[Close]
BLAST of mRNA_S-ischiensis_contig13.3037.1 vs. uniprot
Match: A0A6H5LA05_9PHAE (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA05_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.390e-37
Identity = 71/123 (57.72%), Postives = 91/123 (73.98%), Query Frame = 3 
Query:  564 VTRGHWNELVVTTDRVQKVIKGGMIVSFRALVVVGNEQGMGGYAIGKASGPNEALEIASRKAKNPKNLLYVERYKKATLVHDVVGKHNNTKVYIWARPPGRGTVAGSLLKEIFTMMGISDASA 932
            + +G W E++V TDRV K +KGGM + +RALV VGN  G+GG+AIGKA  P  A+  ASRKAK   NL+YVERYK+A+L  D+VGKHN +KVYIW+RPPG G  AG L ++I   MGI+D +A
Sbjct:    1 MAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGAA 123
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BLAST of mRNA_S-ischiensis_contig13.3037.1 vs. uniprot
Match: A0A7S1U8N8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8N8_9STRA)

HSP 1 Score: 143 bits (360), Expect = 7.110e-37
Identity = 82/174 (47.13%), Postives = 105/174 (60.34%), Query Frame = 3 
Query:  534 EEDQEEGTVNVTRGHWNELVVTTDRVQKVIKGGMIVSFRALVVVGNEQGMGGYAIGKASGPNEALEIASRKAKNPKNLLYVERYKKATLVHDVVGKHNNTKVYIWARPPGRGTVAGSLLKEIFTMMGISDASARIIGPRNPYSVVHAIFNALSQHESLEDIALKRGKRILSLNR 1055
            EE  +E      +G W E ++  D+VQKV+ GG +  FRAL VVGN  G  G+ +GKA    +A E + R AK  KN++ V+RY    L HD+ GKHN  +V+I+ARP      AG +   I    GI DA+ RI GP NPYSVV A FNALS+H S+   A  RG+RILSL R
Sbjct:   39 EELNQEAMWGENKGPWMENLIMVDQVQKVVPGGTVPRFRALTVVGNINGAVGFGVGKAEDIQDATEKSFRNAK--KNIIIVDRYFGRALYHDLYGKHNGCRVWIYARPVNTELRAGRITAAIMEAAGIMDATVRIDGPMNPYSVVRATFNALSKHRSIVHHARVRGRRILSLYR 210
[Close]
BLAST of mRNA_S-ischiensis_contig13.3037.1 vs. uniprot
Match: A0A1Z5K7E2_FISSO (Small subunit ribosomal protein S5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7E2_FISSO)

HSP 1 Score: 146 bits (368), Expect = 3.790e-36
Identity = 76/167 (45.51%), Postives = 109/167 (65.27%), Query Frame = 3 
Query:  564 VTRGHWNELVVTTDRVQKVIKGGMIVSFRALVVVGNEQGMGGYAIGKASGPNEALEIASRKAKNPKNLLYVERYKKATLVHDVVGKHNNTKVYIWARPPGRGTVAGSLLKEIFTMMGISDASARIIGPRNPYSVVHAIFNALSQHESLEDIALKRGKRILSLNRVLR 1064
            +  G W+E++VT DR  K+ +GG + S+RALV+ GN  G GG+ IGK+  P  A+ +ASRK K  +N+ +V+RY+   L  D+ GK N+ KVY+  R    G     L++EI    GI++  A+  G RNPY+V  A F AL  HES+EDIALKRGKR++S++R +R
Sbjct:  235 LAHGEWSEMLVTVDRTTKLWRGGRLESYRALVIGGNLNGCGGFGIGKSKDPINAVAVASRKCK--RNIFFVDRYQGNGLTSDLAGKQNSCKVYL--RSTDDGLRGNHLIREILKRFGITNCVAKSHGNRNPYNVTRATFKALMTHESIEDIALKRGKRLVSIDRAMR 397
[Close]
BLAST of mRNA_S-ischiensis_contig13.3037.1 vs. uniprot
Match: A0A7R9WRG6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRG6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 9.560e-36
Identity = 79/179 (44.13%), Postives = 115/179 (64.25%), Query Frame = 3 
Query:  531 TEEDQEEGTVN-VTRGHWNELVVTTDRVQKVIKGGMIVSFRALVVVGNEQGMGGYAIGKASGPNEALEIASRKAKNPKNLLYVERYKKATLVHDVVGKHNNTKVYIWARPPGRGTVAGSLLKEIFTMMGISDASARIIGPRNPYSVVHAIFNALSQHESLEDIALKRGKRILSLNRVLR 1064
            T +D+    VN +  G W E+VV TDRV+K+ +GG I SFRALV+ GN  G GG+ +GK+  P +A+E+A R A+  +N+ +V+RY+   +  D+VG+ NN +V +  R    G     L  EI  +MGI++  A+  GPRN Y+VV A F AL  HESLEDI++KRG R+++L +  R
Sbjct:  203 TNDDENSVPVNRLAHGDWGEMVVRTDRVRKMWRGGRIESFRALVIGGNLTGCGGFGVGKSFEPEDAVELACRMAR--RNIFFVDRYRNRGITRDLVGRQNNCRVQL--RSTDNGLRGNPLCCEILKLMGITNVVAKAHGPRNHYNVVRATFKALMTHESLEDISMKRGVRLVNLQKAKR 377
[Close]
BLAST of mRNA_S-ischiensis_contig13.3037.1 vs. uniprot
Match: A0A7R9WPF3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WPF3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.030e-35
Identity = 74/163 (45.40%), Postives = 107/163 (65.64%), Query Frame = 3 
Query:  576 HWNELVVTTDRVQKVIKGGMIVSFRALVVVGNEQGMGGYAIGKASGPNEALEIASRKAKNPKNLLYVERYKKATLVHDVVGKHNNTKVYIWARPPGRGTVAGSLLKEIFTMMGISDASARIIGPRNPYSVVHAIFNALSQHESLEDIALKRGKRILSLNRVLR 1064
            H  E+VV TDRV+K+ +GG I SFRALV+ GN  G GG+ +GK+  P +A+E+A R A+  +N+ +V+RY+   +  D+VG+ NN +V +  R    G     L  EI  +MGI++  A+  GPRN Y+VV A F AL  HESLEDI++KRG R+++L +  R
Sbjct:   32 HRGEMVVRTDRVRKMWRGGRIESFRALVIGGNLTGCGGFGVGKSFEPEDAVELACRMAR--RNIFFVDRYRNRGITRDLVGRQNNCRVQL--RSTDNGLRGNPLCCEILKLMGITNVVAKAHGPRNHYNVVRATFKALMTHESLEDISMKRGVRLVNLQKAKR 190
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.3037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTY3_ECTSI5.770e-7549.10S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
D7FTY0_ECTSI1.820e-7045.40S5 DRBM domain-containing protein n=2 Tax=Ectocarp... [more]
F0Y2H1_AURAN2.280e-4149.69S5 DRBM domain-containing protein n=1 Tax=Aureococ... [more]
A0A7S2SS45_9STRA1.700e-4052.20Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3ZVY7_9STRA7.890e-3948.77Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6H5LA05_9PHAE1.390e-3757.72S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S1U8N8_9STRA7.110e-3747.13Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1Z5K7E2_FISSO3.790e-3645.51Small subunit ribosomal protein S5 n=2 Tax=Fistuli... [more]
A0A7R9WRG6_9STRA9.560e-3644.13Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7R9WPF3_9STRA2.030e-3545.40Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:1768177..1773506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.6
Seed ortholog evalue2.1e-63
Seed eggNOG ortholog2880.D7FTY3
Preferred nameMRPS5
KEGG koko:K02988,ko:K14026
KEGG Pathwayko03010,ko04141,map03010,map04141
KEGG ModuleM00178,M00179,M00403
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0098@1,KOG2646@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categorymitochondrion
Exons8
Model size1239
Cds size1041
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.3037.1prot_S-ischiensis_contig13.3037.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 1768346..1773477 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815690.4534712-UTR-S-ischiensis_contig13:1768176..17683451622815690.4534712-UTR-S-ischiensis_contig13:1768176..1768345Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 1768177..1768345 -
1695739853.7970326-UTR-S-ischiensis_contig13:1768176..17683451695739853.7970326-UTR-S-ischiensis_contig13:1768176..1768345Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 1768177..1768345 -
1622815690.68092-UTR-S-ischiensis_contig13:1773477..17735061622815690.68092-UTR-S-ischiensis_contig13:1773477..1773506Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 1773478..1773506 -
1695739853.898406-UTR-S-ischiensis_contig13:1773477..17735061695739853.898406-UTR-S-ischiensis_contig13:1773477..1773506Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 1773478..1773506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815690.4669857-CDS-S-ischiensis_contig13:1768345..17684861622815690.4669857-CDS-S-ischiensis_contig13:1768345..1768486Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1768346..1768486 -
1695739853.8073575-CDS-S-ischiensis_contig13:1768345..17684861695739853.8073575-CDS-S-ischiensis_contig13:1768345..1768486Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1768346..1768486 -
1622815690.600796-CDS-S-ischiensis_contig13:1769952..17700451622815690.600796-CDS-S-ischiensis_contig13:1769952..1770045Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1769953..1770045 -
1695739853.8153856-CDS-S-ischiensis_contig13:1769952..17700451695739853.8153856-CDS-S-ischiensis_contig13:1769952..1770045Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1769953..1770045 -
1622815690.6121774-CDS-S-ischiensis_contig13:1770495..17705891622815690.6121774-CDS-S-ischiensis_contig13:1770495..1770589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1770496..1770589 -
1695739853.8233194-CDS-S-ischiensis_contig13:1770495..17705891695739853.8233194-CDS-S-ischiensis_contig13:1770495..1770589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1770496..1770589 -
1622815690.623439-CDS-S-ischiensis_contig13:1771129..17712541622815690.623439-CDS-S-ischiensis_contig13:1771129..1771254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1771130..1771254 -
1695739853.8377583-CDS-S-ischiensis_contig13:1771129..17712541695739853.8377583-CDS-S-ischiensis_contig13:1771129..1771254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1771130..1771254 -
1622815690.636756-CDS-S-ischiensis_contig13:1771772..17718681622815690.636756-CDS-S-ischiensis_contig13:1771772..1771868Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1771773..1771868 -
1695739853.8552423-CDS-S-ischiensis_contig13:1771772..17718681695739853.8552423-CDS-S-ischiensis_contig13:1771772..1771868Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1771773..1771868 -
1622815690.6486952-CDS-S-ischiensis_contig13:1772194..17724161622815690.6486952-CDS-S-ischiensis_contig13:1772194..1772416Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1772195..1772416 -
1695739853.865653-CDS-S-ischiensis_contig13:1772194..17724161695739853.865653-CDS-S-ischiensis_contig13:1772194..1772416Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1772195..1772416 -
1622815690.658734-CDS-S-ischiensis_contig13:1773090..17732831622815690.658734-CDS-S-ischiensis_contig13:1773090..1773283Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1773091..1773283 -
1695739853.8748736-CDS-S-ischiensis_contig13:1773090..17732831695739853.8748736-CDS-S-ischiensis_contig13:1773090..1773283Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1773091..1773283 -
1622815690.6712794-CDS-S-ischiensis_contig13:1773400..17734771622815690.6712794-CDS-S-ischiensis_contig13:1773400..1773477Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1773401..1773477 -
1695739853.8875418-CDS-S-ischiensis_contig13:1773400..17734771695739853.8875418-CDS-S-ischiensis_contig13:1773400..1773477Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 1773401..1773477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.3037.1

>prot_S-ischiensis_contig13.3037.1 ID=prot_S-ischiensis_contig13.3037.1|Name=mRNA_S-ischiensis_contig13.3037.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=347bp
MSTTLLARNLGQTLRRCRPGTVGRLRSFPGPLQSRFVHWTMPLLDAEDGR
GGDAKQGGVGRDERADGSPSLPRLPPISMSENDEPDFLDVADRILGGMSY
RDAAMGTAFDGLSHEEEERFEEADRRLQALRRGELEEYLLSVGEHDMVEE
LQLAEEKRREAIRKLEKTEEDQEEGTVNVTRGHWNELVVTTDRVQKVIKG
GMIVSFRALVVVGNEQGMGGYAIGKASGPNEALEIASRKAKNPKNLLYVE
RYKKATLVHDVVGKHNNTKVYIWARPPGRGTVAGSLLKEIFTMMGISDAS
ARIIGPRNPYSVVHAIFNALSQHESLEDIALKRGKRILSLNRVLRS*
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mRNA from alignment at S-ischiensis_contig13:1768177..1773506-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.3037.1 ID=mRNA_S-ischiensis_contig13.3037.1|Name=mRNA_S-ischiensis_contig13.3037.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5330bp|location=Sequence derived from alignment at S-ischiensis_contig13:1768177..1773506- (Schizocladia ischiensis KU_0333)
GCCCTCCTTCAGTCCCAACCACCCTGCACATGAGCACTACACTTCTCGCA
CGGAATCTGGGGCAGACGCTTCGAAGATGTCGGCCTGGGACCGTAGGGCG
ACTCAGGCAAGTGTTTTCGGCTACTTGTCCCCATTTTCCTGGCCCTTTGT
TCCTGGCCGGGAATTCTGTCCAAACAGCCACCAAGGTGTAAGCCGTTTGA
CTCTGCCCCTCCTACCGTTGCAGATCATTCCCTGGTCCATTGCAGTCGAG
ATTCGTGCACTGGACCATGCCTCTGCTGGACGCAGAGGACGGGCGAGGTG
GTGATGCGAAGCAGGGCGGTGTGGGCCGGGATGAGCGAGCAGATGGTTCA
CCATCCCTGCCGCGGCTTCCACCCATCTCCATGTCAGAGAATGACGAGCC
AGACTTCCTTGATGTGGTGGGTATCGTGCGCATGCACGCTGGGCGAGTGT
GGCTGACGTACTGTATTGTACTTAAATTGGTACGACGTTAAACAACACAC
ACCTCTGAGCTAAGGAACGCCTCGATTTCTTGTATTCAAATCGCTCGTTG
TGGCTTGTGAAACACGATAGTGTTGGTAAACGACGTCGTCTCTGCTTGCC
TGAGGGACGTCGCATAGCATAATCCGAGCCCATGAGACCCATTTGCGCTG
CGATAACCTTGAGAAAACCGTAGCTTGTCCTGCCAGGAAGTAAGCTACGA
GTACGAACTGCAGTCGACTTACAGTACGCATGGTTCTGCGGGAGCAGTCA
AGCACTGTGTATATGGTCTTGGTTGTAAAATTGGGCACAGGCGCGCCCCC
CTCTCTGCCCCACTTCAAGTGCCTCTCTTCCTTGATCTTCATCACGATGG
TTTCATAGGCTTTGCATGGTCAAGCCTTTATGCCGGCGGATGGACAATGT
GATTGGATCATGAGGTCCTTGGAAGTAATTTTGAGGTAATGTGCAACTGC
TTTGACCCATATGCCATAACAGCAAGAGCTCGCACCTGAAGCCAAGCCAA
GGAGTGCTGCAGTTGCACTGTACTGTAGTAGTGATACGGCCTGTATTCAC
ACCACGCACTCACATTTTGTTCATATGATGATATCGGCAGGCGGACAGGA
TCCTTGGTGGCATGAGCTACCGTGACGCGGCGATGGGGACAGCTTTTGAT
GGACTCAGCCATGAAGAGGAGGAGAGATTTGAGGAGGCAGACCGCAGATT
ACAGGCGCTGCGGCGCGGGGAGCTGGAAGAATACCTTTTGAGCGTAGGGG
AACACGACATGGTGGAAGAGCTGCAGCTAGCTGAAGAGAAGCGCAGGGAA
GCCATCCGGAAGGTGCGCTGCTGGTTTTAATGGTATTCTTGCTACTGTAC
TGCTTGTACTGTAACGCATTTGGTTTACCTTGGAAGTACAATACAGTAAG
GGTACAGTACAGTACAGTACAGTACAGTACTACAGTAGCAGACGGTCTTA
GGGACTCCAAGCAACTCCAGCCGAAATGGTATGAGTACATCCCGCCACCT
GGATTGCCAATGCCCCGTGCCGTGCGTTCCAAATCATCTGCACCCGTTCC
TCTGTGGCACACACACGCACACGCATGCGTATCAACCTGCCGTTGATTTT
TTTCAGCGCATGTTTGAATGTGGTTGCCCGCCTGGCAGCTGGAGAAGACG
GAAGAAGATCAAGAGGAGGGCACTGTCAATGTCACCAGAGGACACTGGAA
TGAGCTGGTGGTCACCACTGACCGTGTCCAGAAGGCAAGAATGCGGGATA
CCTACTACTATAGTAGTGTGATACGCGGCAGTGCCTGCCCAGGTGTTCGT
TTTCCAGCACGTGCGTTGTTCATACTGTGTCCAAGGCCATTGCGACCGTT
AAAATCAGTTCTCCGGGCGAAAAAGGAAACCCACGGTGTGTATTAAATGT
GCAGTGTCCCCACTGGCCCCCTGTGCCTGCATTTACAGTTTCACTGGCGA
ATCTTCCCTCGCATCGCCAGCACACGCTCGAGCCTAGCTGAGGCATGACC
GCATTGGCATGGTTTTGTCCTCAAACAGCTCAAGCAAGAAAAAGGTTCAA
CCATGGCTCCTCGCTATCCCTGGCGTGCGCTGTCAAAAAGACAGACTGTG
CACGTTAATTGGGACGTTGGAGACCCATACATTGTTTTGCCTGCTTTGGT
GTGCAGCGTGCCCTGTCCTCGCCCTCAGCCCCCAAATCCGTTGCGTTGAA
ACTTGCAAGTCGCTTTGCCGTGCCCTATGCGTGTCTTGTCTGGCGTGGAC
AGGTGATCAAAGGTGGCATGATTGTCTCTTTCAGGGCTTTGGTGGTGGTG
GGCAATGAACAGGGCATGGGAGGCTACGCAATCGGGAAGGCATCTGGCCC
CAACGAGGCCCTGGAGATTGCAAGCCGGTGAGTCCACCTGCAGTAACTGT
GTACGGTCGTCTTGCTTACCGAGTCAACACATTCCCACATATAGAGATGC
CTAGCCCGCATGCCCCACTGTGAGCACAAGAGACTTCGCCGCGCCTCTTC
CCTTTCCTCCTAACCTGCCCCTTTCCTTCTTTACTTTTTGTTTTTCTTCT
TGCCCTGCGAGGGAAGGAAGGGCTTCATTGAGTCCTGTTTCGGGACGATC
CTTTTGGAACGGGGCCTGGAACTCGCCGCTTATCTATCACTCAAAATAGA
GATGCGGCCACTTTCGCAAGTATTCGCCAGAAAGTAGGTATGTTGGAGCA
TGCCCCGGTACTATGACTTTCTTGTGCTCGTTACGTCTTGGACGCCTGTT
CCGGGCCCTGGTTGCGAACAGCATTGTTGGTCAAGTCTAGGGCAGCAGTG
TCTGGTTCTCCGTTTGCCTGCGATACGGGAAGCACTACTACAGTATGTAG
TGGGACTGTACGTTGAAGTTTACTTATGCACACGCTTGTGTGCGACTGCC
TGTCTTGTGGCTGGCAGCAAGGCAAAGAATCCCAAGAACCTCTTGTATGT
GGAGCGCTACAAGAAGGCCACTCTGGTCCATGACGTGGTGGGGAAGCACA
ACAACACCAAGGTGAGCCTGGATGTGACATTGACTTGCTTTTCAAGGCTG
TACCCGAGCGTTCCCATCGTGTGTACGAAGTAGGTATTAGTGGAGCTCGA
ACATGAAGTGTACGTATACGCTGTGATGAGTGGTACCACCTTGTACGCCT
GGGGTCAACCTGCCAATGGCACATGTATACTCGTAGTACAGTAGACACTT
GCCGGCGGAGTTATTGATTGGTCACCTCATTGCACTATAGGCACCATTAC
TTCTTCATGTATGGCACGCGGAGTTTTGAGCGTGTGAGAGAGTACACAAG
GTACTTCCAGCACACAAGGTGTGTGCACAGGAGGAGTCAGTCGTACTTGT
TGAGCGGGAGCAGCCACAAGTTGCTCTCCCCGTGGTGCTGTCATCCCAGC
ATCATCGTGCCCCAGAGGCCAAGCACTTTCGGCTTGTGTGTGTGTGTGTG
TGTGTGTGCAGGTGTACATCTGGGCACGTCCACCAGGCCGGGGCACAGTG
GCGGGCAGCCTGCTCAAGGAGATCTTCACCATGATGGGAATCAGCGATGC
GTCGGTGGGTCATAAGTTCCAGTATGTACGGTTGTACAGTAGGAGTTCAG
TAGTACTCGTACAGTACATACGAGTACCATTGTACTGTAGAGTATGAGTA
CAGTAGTACTGTAGCATGCCTACGGTGCACTTCTCGAAGAGCCTTGGGCT
GCACAGCCGCCTTTTTGCGGAAGTCACCCCCCCCCGAGGGGATTCGAAAT
CACAACCTTCGGGGTGTGACCCCCAAAGTACCTAGAGTTGAGTATCCCTG
GGATTGAGAGCTTAACGCGCACGGACAGCACCCATCACATATTTCTCCAG
CTTGCGTAGGAGCAAGTCTTAGTGTTTCCATGCGTTCCGGAGTGCCAACG
CTTTTCTTCAAGACTCGCTTTGTACTCGTGCTCAAGTGCTTTCAAGGAGC
CCCGATAGTACTCTGATGTGCTGTAGTGCAAGTTGCTTGCAAGCCCTTAT
TCAGCCATGTTGGAGACTATGTTTGGCCTCATCCACTGGGGCTCGGTACT
CACGGATCTCGGAACTTGAACGCCACAGACTCCTGCAGACCCCGATGGAA
CCGTACCATGTTTTTTCAACTCTGACTGTGCGCAACAACTACTGTACTGT
ACAGTACGGATACAATACTGTCCATGCATGATATCACACACAAGTTTGCG
TGGAAAATATGACCAATAAACAAGTGACAGCTGGCGCTGGTTGGGCTGTT
GCCGGTTTTTCCTTCTTTCTCATACTTCTGAAGTACTTGGAAGTCAACAC
TGTGCACATTGAGCTCTCATATGTACTCGAGTACTGTACAGTACTGTCCA
TGCATGATAACACACACAATTTTTAGTGGAAATATGACCAATAAACAGGT
GACAGCTGGGGGTGGTTGAGCCGTGGCCGGTTTTCCCTTCTTTCTCATAC
TTGGAAGTCAACACTGTGCAAATTGAGCTCTCATATGTACTCGAGTACTG
TACATATTACGCTATGGTTGCAGTAGTCCCGAGACCCGCCTCGACCGAGA
CAGAGCCATGTCAAACACCAGGTACGAGTACATGTCAATTGGCAAGAAGA
GTTGGCACGAGCATACCTAACTAAATGTCGATTGAACTACATACGTACAC
ACCTGTCTGTACTGTTGCTTGCAGGGACCACTGCACTGCATATGCTTTGT
GCTCTAATACTTGGTAGCACCTCGGCTTGTTCACGTCTTGACCTTCTCGA
GTAGATGGGCGTAAAACAAAAGCGGTTGCGTGGTGAACGAGATGATTGCA
TGCTGTGAGGTGATTGATGATGTGTAGGCACTGTGACATCTCCTTACGCC
AAGCACAGTGCACGACAGCTACTGTGCAGTAGGTGTGCAAACAATACATG
TGCGCACGTTTCCCTCCCTCGTGTGATGCATCTGCCATGTCTCGTCTAAC
CTCTGCTTTTCTTTCCCTCCCGCATCCCTGTCATGCATGGTGGGACTTGT
CTTGCATCTGTAATGTCAAGGCACGCATAATTGGACCGCGTAACCCTTAC
TCGGTGGTGCATGCCATCTTCAACGCTTTGAGTCAGCACGAGAGCCTTGA
GGACATTGCCTTGAAGCGGGGCAAGCGCATACTCTCCCTCAACCGGGTGT
TGAGGTCATGAGATGGGCCTTGGGAGTCGGGACAGCAGGCATGCCGTGCG
TACGTGGCCCACACCTGGATGGACGCACTGTACAATTACAGCAATGTACT
GTACGGTGGGGCTGCTCCATGAGAAAGTGTGACACATGTGCAGTAGAGAT
GCGCACGTTAATGGCATGCTGTAAATGTAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:1768177..1773506-

>mRNA_S-ischiensis_contig13.3037.1 ID=mRNA_S-ischiensis_contig13.3037.1|Name=mRNA_S-ischiensis_contig13.3037.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2082bp|location=Sequence derived from alignment at S-ischiensis_contig13:1768177..1773506- (Schizocladia ischiensis KU_0333)
ATGAGCACTACACTTCTCGCACGGAATCTGGGGCAGACGCTTCGAAGATG
TCGGCCTGGGACCGTAGGGCGACTCAGATGAGCACTACACTTCTCGCACG
GAATCTGGGGCAGACGCTTCGAAGATGTCGGCCTGGGACCGTAGGGCGAC
TCAGATCATTCCCTGGTCCATTGCAGTCGAGATTCGTGCACTGGACCATG
CCTCTGCTGGACGCAGAGGACGGGCGAGGTGGTGATGCGAAGCAGGGCGG
TGTGGGCCGGGATGAGCGAGCAGATGGTTCACCATCCCTGCCGCGGCTTC
CACCCATCTCCATGTCAGAGAATGACGAGCCAGACTTCCTTGATGTGATC
ATTCCCTGGTCCATTGCAGTCGAGATTCGTGCACTGGACCATGCCTCTGC
TGGACGCAGAGGACGGGCGAGGTGGTGATGCGAAGCAGGGCGGTGTGGGC
CGGGATGAGCGAGCAGATGGTTCACCATCCCTGCCGCGGCTTCCACCCAT
CTCCATGTCAGAGAATGACGAGCCAGACTTCCTTGATGTGGCGGACAGGA
TCCTTGGTGGCATGAGCTACCGTGACGCGGCGATGGGGACAGCTTTTGAT
GGACTCAGCCATGAAGAGGAGGAGAGATTTGAGGAGGCAGACCGCAGATT
ACAGGCGCTGCGGCGCGGGGAGCTGGAAGAATACCTTTTGAGCGTAGGGG
AACACGACATGGTGGAAGAGCTGCAGCTAGCTGAAGAGAAGCGCAGGGAA
GCCATCCGGAAGGCGGACAGGATCCTTGGTGGCATGAGCTACCGTGACGC
GGCGATGGGGACAGCTTTTGATGGACTCAGCCATGAAGAGGAGGAGAGAT
TTGAGGAGGCAGACCGCAGATTACAGGCGCTGCGGCGCGGGGAGCTGGAA
GAATACCTTTTGAGCGTAGGGGAACACGACATGGTGGAAGAGCTGCAGCT
AGCTGAAGAGAAGCGCAGGGAAGCCATCCGGAAGCTGGAGAAGACGGAAG
AAGATCAAGAGGAGGGCACTGTCAATGTCACCAGAGGACACTGGAATGAG
CTGGTGGTCACCACTGACCGTGTCCAGAAGCTGGAGAAGACGGAAGAAGA
TCAAGAGGAGGGCACTGTCAATGTCACCAGAGGACACTGGAATGAGCTGG
TGGTCACCACTGACCGTGTCCAGAAGGTGATCAAAGGTGGCATGATTGTC
TCTTTCAGGGCTTTGGTGGTGGTGGGCAATGAACAGGGCATGGGAGGCTA
CGCAATCGGGAAGGCATCTGGCCCCAACGAGGCCCTGGAGATTGCAAGCC
GGTGATCAAAGGTGGCATGATTGTCTCTTTCAGGGCTTTGGTGGTGGTGG
GCAATGAACAGGGCATGGGAGGCTACGCAATCGGGAAGGCATCTGGCCCC
AACGAGGCCCTGGAGATTGCAAGCCGCAAGGCAAAGAATCCCAAGAACCT
CTTGTATGTGGAGCGCTACAAGAAGGCCACTCTGGTCCATGACGTGGTGG
GGAAGCACAACAACACCAAGCAAGGCAAAGAATCCCAAGAACCTCTTGTA
TGTGGAGCGCTACAAGAAGGCCACTCTGGTCCATGACGTGGTGGGGAAGC
ACAACAACACCAAGGTGTACATCTGGGCACGTCCACCAGGCCGGGGCACA
GTGGCGGGCAGCCTGCTCAAGGAGATCTTCACCATGATGGGAATCAGCGA
TGCGTCGGTGTACATCTGGGCACGTCCACCAGGCCGGGGCACAGTGGCGG
GCAGCCTGCTCAAGGAGATCTTCACCATGATGGGAATCAGCGATGCGTCG
GCACGCATAATTGGACCGCGTAACCCTTACTCGGTGGTGCATGCCATCTT
CAACGCTTTGAGTCAGCACGAGAGCCTTGAGGACATTGCCTTGAAGCGGG
GCAAGCGCATACTCTCCCTCAACCGGGTGTTGAGGTCATGAGCACGCATA
ATTGGACCGCGTAACCCTTACTCGGTGGTGCATGCCATCTTCAACGCTTT
GAGTCAGCACGAGAGCCTTGAGGACATTGCCTTGAAGCGGGGCAAGCGCA
TACTCTCCCTCAACCGGGTGTTGAGGTCATGA
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