|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 898 |
| Cds size | 897 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815673.1369143-UTR-S-ischiensis_contig13:1043399..1043400 | 1622815673.1369143-UTR-S-ischiensis_contig13:1043399..1043400 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig13 1043400..1043400 + |
| 1695739842.725487-UTR-S-ischiensis_contig13:1043399..1043400 | 1695739842.725487-UTR-S-ischiensis_contig13:1043399..1043400 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig13 1043400..1043400 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815673.1481946-CDS-S-ischiensis_contig13:1043400..1043511 | 1622815673.1481946-CDS-S-ischiensis_contig13:1043400..1043511 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig13 1043401..1043511 + |
| 1695739842.743681-CDS-S-ischiensis_contig13:1043400..1043511 | 1695739842.743681-CDS-S-ischiensis_contig13:1043400..1043511 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig13 1043401..1043511 + |
| 1622815673.161655-CDS-S-ischiensis_contig13:1044152..1044383 | 1622815673.161655-CDS-S-ischiensis_contig13:1044152..1044383 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig13 1044153..1044383 + |
| 1695739842.7522666-CDS-S-ischiensis_contig13:1044152..1044383 | 1695739842.7522666-CDS-S-ischiensis_contig13:1044152..1044383 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig13 1044153..1044383 + |
| 1622815673.1794693-CDS-S-ischiensis_contig13:1045306..1045861 | 1622815673.1794693-CDS-S-ischiensis_contig13:1045306..1045861 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig13 1045307..1045861 + |
| 1695739842.7606366-CDS-S-ischiensis_contig13:1045306..1045861 | 1695739842.7606366-CDS-S-ischiensis_contig13:1045306..1045861 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig13 1045307..1045861 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig13.2963.1 >prot_S-ischiensis_contig13.2963.1 ID=prot_S-ischiensis_contig13.2963.1|Name=mRNA_S-ischiensis_contig13.2963.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=299bp
MVCNDCRGGGGEGNQRLLKCGTPGCWRRFHRACAEKRGGAGAQHFYCAPC
VQAGYKDDYETVCYICLRGDKEEFILQCGDGDRPANEEGCGLEAHMYCLP
IPLGLRELGEEDEKWFCPRCVGKGKGRWQWDPNFHPGDAKIPSRHTTDAA
KPKPQTRQGGAGAFGIPKRPGGGGGGGGGGSSSSSGKCASSSSRSHNSGS
SGGRRRAGGGLPAPRGAKRPCTQPCGQKPASDERCDLCGTGAGGVGLRPS
LLLKCRNRQCKDASSGGATFHLECLKKRGGKDGGGGGGGGGGGAGSRNG back to topmRNA from alignment at S-ischiensis_contig13:1043400..1045861+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig13.2963.1 ID=mRNA_S-ischiensis_contig13.2963.1|Name=mRNA_S-ischiensis_contig13.2963.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2462bp|location=Sequence derived from alignment at S-ischiensis_contig13:1043400..1045861+ (Schizocladia ischiensis KU_0333)
GATGGTCTGCAACGACTGCAGGGGGGGGGGCGGCGAGGGCAACCAACGCC
TGCTGAAGTGCGGAACCCCCGGTTGCTGGAGGCGTTTCCACAGGGCGTGC
GCCGAGAAGCGGGTGAGCAGTGTGTACTCACGTCTCTGTGCATGCCCTGG
ACCCGAATGATCCTCGTCTTTGCTCCTTCTCGTGGATCGCTGGCCGGCTG
TAGCCGAAGCCATTGGCCACGCGTCCTATTGGACGGAGCACGCCGGGTAT
TTCACCGACAGAACAGTGGTGCTACAATTGTACGAAGTACGTGATATAGA
CGACGCTGCAGACGATTTGAAGCGATTCCGAGTACTGTATGTGCTTCGAT
TTACAGTACACGCTTTGTCTTCTAAGCACAGCTGTACTCGAGTAATTGAC
TACTCAACAGGGTGCATGCGGTTCAGTCAAGCGACTCATGAGCGAGAGCC
CCCCGGTCTCTGCCCACCCTGCCACCAGGAGGCAGCGATGGAATATCTAA
GCAAATCAACCTATTTATCGACGGTACATCTATCGATAGTCGATATTCGA
TAGTTTGACCAACACTAAATCCAAAAAGTACTCGTACTTTCTGGCATGTA
GATAAAACGCGAGTGGAAAAGAGGAGGTGTTCCTACTTACGCGAGTTCAA
GGCCCCCTTCCCCGGAAGCCCGTCTTAGTTCGTAACGCCGCCCACAAAAT
TAGTCGAGCCCGATAACCATCTACTGATCGATATTCTATTCCATCACTGC
CAGGGCGGCGCCGGCGCCCAGCACTTCTATTGCGCGCCCTGCGTCCAGGC
GGGGTATAAAGATGACTACGAGACGGTCTGCTACATCTGCCTGCGTGGGG
ACAAGGAGGAATTCATCCTCCAGTGCGGGGACGGGGACCGGCCCGCCAAC
GAGGAAGGCTGCGGGCTGGAGGCTCACATGTACTGCCTTCCAATCCCCCT
GGGTCTCCGGGAGCTCGGCGAGGAGGACGAGAAGGTGAGACGGAGCCGGG
TTCGTCCGTGCGTGCGTGCGTGCCTGCGTACGTGTGTGCGTATGCGTGTG
TGTGTGTGCGTGTGTGCGTGTGTGTGTGCGTGTGTGTGCGTATACATGGG
CGAGGGCTGCGGGTGGGAGGCGCACATGTACTACCTTCCAGTCCCCCTGG
AACTCCTGTTCGGCGAGGAGGATGAGAAGGTGAGGGGGAGGCGGGGTCGT
GCGTGCGTGCGTGCGTGTGCGCATGTGTGTGTGTGTGTGTGTGCGCGCGC
GCGCGCGCGTGTGTGCATGTGTGCATGTGTGTGTGTGTGCGTGTGTTCGT
GTACTGCCTTCCAATCCCCCTGGAATTCCCGTTCGGGGAGGAGGACGAGA
AGGTGAGGGGGAAGCCGGGGTCGTGTGTGTGTATGTGTGTGCGCGCGCGC
GAGTGTGCGTATACCTGGGCCACTGAAGAGGGCTGCGGGCAGGAGGCGCA
CGTGTACTGCCTTCCTGTCCCCCTGGAACTCCCCTTCAGGGAGGAGGACG
AGAAGGTGAGTCGGAGCCGGGGCGGAGCCTGGGTCGTGTGTGCGTGCGTG
CATGTGTGTGTGTGTGTGTGCGTGACTGCCTTCCAGTCCCCCTGGAACTC
CCGTTCGGCAACCAGGACGAGAAGGTGAGGCGGACGAGCCGGGGTCGTGC
GTGTGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCAGCG
AAAGGAATTTGCTGACCAGCTAACCACGACCACCCGCCCGCCCGCCCGCC
CGCCCGCCCGCCCACTGCGAATCTCCCGGGGTGGGAAACACTCGACAACA
ACAAAAACAAAAACAACAACAACATCAACGATGACGACGACAACGACAAC
GACAACGACGACGACGACGACGACGACGACGACGACAACAACAACATCAA
CAAGCAGTGGTTTTGCCCCAGATGCGTGGGCAAGGGCAAGGGGCGCTGGC
AGTGGGACCCGAACTTCCACCCCGGTGACGCGAAAATACCTTCCCGACAC
ACCACCGACGCCGCCAAGCCCAAACCCCAGACGAGGCAGGGCGGGGCTGG
TGCCTTTGGCATCCCGAAGCGCCCTGGCGGCGGCGGCGGAGGCGGCGGCG
GCGGCAGCAGCAGCAGCTCCGGCAAATGCGCCAGCAGCAGCAGCCGCAGC
CACAACAGCGGCAGCAGCGGCGGCAGGCGCAGAGCAGGGGGAGGTCTGCC
CGCCCCCCGCGGGGCCAAGCGCCCCTGCACTCAGCCCTGTGGCCAAAAAC
CCGCCTCGGATGAGCGCTGCGACTTGTGCGGGACCGGGGCCGGCGGGGTG
GGGCTGCGGCCGAGCCTGCTGCTCAAGTGCCGCAACCGCCAATGCAAGGA
CGCAAGCTCGGGGGGTGCCACGTTCCATCTGGAGTGCCTTAAAAAACGCG
GCGGCAAGGATGGAGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGCAGGC
AGCAGAAACGGC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig13:1043400..1045861+ >mRNA_S-ischiensis_contig13.2963.1 ID=mRNA_S-ischiensis_contig13.2963.1|Name=mRNA_S-ischiensis_contig13.2963.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1794bp|location=Sequence derived from alignment at S-ischiensis_contig13:1043400..1045861+ (Schizocladia ischiensis KU_0333)
ATGGTCTGCAACGACTGCAGGGGGGGGGGCGGCGAGGGCAACCAACGCCT
GCTGAAGTGCGGAACCCCCGGTTGCTGGAGGCGTTTCCACAGGGCGTGCG
CCGAGAAGCGGATGGTCTGCAACGACTGCAGGGGGGGGGGCGGCGAGGGC
AACCAACGCCTGCTGAAGTGCGGAACCCCCGGTTGCTGGAGGCGTTTCCA
CAGGGCGTGCGCCGAGAAGCGGGGCGGCGCCGGCGCCCAGCACTTCTATT
GCGCGCCCTGCGTCCAGGCGGGGTATAAAGATGACTACGAGACGGTCTGC
TACATCTGCCTGCGTGGGGACAAGGAGGAATTCATCCTCCAGTGCGGGGA
CGGGGACCGGCCCGCCAACGAGGAAGGCTGCGGGCTGGAGGCTCACATGT
ACTGCCTTCCAATCCCCCTGGGTCTCCGGGAGCTCGGCGAGGAGGACGAG
AAGGGCGGCGCCGGCGCCCAGCACTTCTATTGCGCGCCCTGCGTCCAGGC
GGGGTATAAAGATGACTACGAGACGGTCTGCTACATCTGCCTGCGTGGGG
ACAAGGAGGAATTCATCCTCCAGTGCGGGGACGGGGACCGGCCCGCCAAC
GAGGAAGGCTGCGGGCTGGAGGCTCACATGTACTGCCTTCCAATCCCCCT
GGGTCTCCGGGAGCTCGGCGAGGAGGACGAGAAGTGGTTTTGCCCCAGAT
GCGTGGGCAAGGGCAAGGGGCGCTGGCAGTGGGACCCGAACTTCCACCCC
GGTGACGCGAAAATACCTTCCCGACACACCACCGACGCCGCCAAGCCCAA
ACCCCAGACGAGGCAGGGCGGGGCTGGTGCCTTTGGCATCCCGAAGCGCC
CTGGCGGCGGCGGCGGAGGCGGCGGCGGCGGCAGCAGCAGCAGCTCCGGC
AAATGCGCCAGCAGCAGCAGCCGCAGCCACAACAGCGGCAGCAGCGGCGG
CAGGCGCAGAGCAGGGGGAGGTCTGCCCGCCCCCCGCGGGGCCAAGCGCC
CCTGCACTCAGCCCTGTGGCCAAAAACCCGCCTCGGATGAGCGCTGCGAC
TTGTGCGGGACCGGGGCCGGCGGGGTGGGGCTGCGGCCGAGCCTGCTGCT
CAAGTGCCGCAACCGCCAATGCAAGGACGCAAGCTCGGGGGGTGCCACGT
TCCATCTGGAGTGCCTTAAAAAACGCGGCGGCAAGGATGGAGGTGGCGGC
GGCGGCGGCGGCGGCGGCGGCGCAGGCAGCAGAAACGGCTGGTTTTGCCC
CAGATGCGTGGGCAAGGGCAAGGGGCGCTGGCAGTGGGACCCGAACTTCC
ACCCCGGTGACGCGAAAATACCTTCCCGACACACCACCGACGCCGCCAAG
CCCAAACCCCAGACGAGGCAGGGCGGGGCTGGTGCCTTTGGCATCCCGAA
GCGCCCTGGCGGCGGCGGCGGAGGCGGCGGCGGCGGCAGCAGCAGCAGCT
CCGGCAAATGCGCCAGCAGCAGCAGCCGCAGCCACAACAGCGGCAGCAGC
GGCGGCAGGCGCAGAGCAGGGGGAGGTCTGCCCGCCCCCCGCGGGGCCAA
GCGCCCCTGCACTCAGCCCTGTGGCCAAAAACCCGCCTCGGATGAGCGCT
GCGACTTGTGCGGGACCGGGGCCGGCGGGGTGGGGCTGCGGCCGAGCCTG
CTGCTCAAGTGCCGCAACCGCCAATGCAAGGACGCAAGCTCGGGGGGTGC
CACGTTCCATCTGGAGTGCCTTAAAAAACGCGGCGGCAAGGATGGAGGTG
GCGGCGGCGGCGGCGGCGGCGGCGGCGCAGGCAGCAGAAACGGC back to top
|