mRNA_S-ischiensis_contig13.2952.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2952.1
Unique NamemRNA_S-ischiensis_contig13.2952.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:974940..975668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size731
Cds size705
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.57632-UTR-S-ischiensis_contig13:974939..9749631622815677.57632-UTR-S-ischiensis_contig13:974939..974963Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 974940..974963 +
1695739845.124441-UTR-S-ischiensis_contig13:974939..9749631695739845.124441-UTR-S-ischiensis_contig13:974939..974963Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 974940..974963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.586568-CDS-S-ischiensis_contig13:974963..9756681622815677.586568-CDS-S-ischiensis_contig13:974963..975668Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 974964..975668 +
1695739845.1327791-CDS-S-ischiensis_contig13:974963..9756681695739845.1327791-CDS-S-ischiensis_contig13:974963..975668Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 974964..975668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2952.1prot_S-ischiensis_contig13.2952.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 974964..975668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2952.1

>prot_S-ischiensis_contig13.2952.1 ID=prot_S-ischiensis_contig13.2952.1|Name=mRNA_S-ischiensis_contig13.2952.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=235bp
MQLFPSPGIVGRRRYFQWPKYFALEAKMHNFMRSGPRPKKRDLTRSASSS
LGAWSGFSHGAQHTWLGGGTFGSQSKKWFGVKTRQGQLSSGSRLSQGWPG
RRANKQGEAFFVILFAEVPPEVPTGSRYPRCLCFDSACVITSANWQVLLL
LSTLYCTLRTAHALYTYSYFKYSMCSYHKQLFHSEVLVKLEETLPARPNG
PPHTGRHSHGRGCQKHQTLYNTKDQVIMAILQHPA
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mRNA from alignment at S-ischiensis_contig13:974940..975668+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2952.1 ID=mRNA_S-ischiensis_contig13.2952.1|Name=mRNA_S-ischiensis_contig13.2952.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=729bp|location=Sequence derived from alignment at S-ischiensis_contig13:974940..975668+ (Schizocladia ischiensis KU_0333)
TACTACGTACAGCAGTTTGGGGGCATGCAGCTTTTTCCGTCACCGGGCAT
AGTAGGTAGGAGGCGGTACTTTCAGTGGCCCAAGTACTTTGCACTTGAAG
CGAAAATGCACAACTTCATGAGATCTGGGCCCCGTCCCAAAAAGCGAGAC
CTCACCAGAAGTGCATCCAGTAGTTTGGGCGCATGGAGCGGTTTCAGTCA
CGGGGCACAGCACACTTGGCTAGGAGGCGGCACTTTCGGCAGCCAAAGCA
AGAAGTGGTTTGGAGTGAAAACACGCCAAGGCCAACTGAGCTCCGGCTCC
CGTCTTTCCCAGGGTTGGCCGGGCAGAAGAGCAAATAAACAAGGCGAAGC
GTTCTTTGTTATACTATTTGCTGAGGTACCTCCAGAGGTACCCACTGGAT
CTAGATACCCCAGATGTTTGTGCTTCGACAGTGCTTGTGTAATTACAAGT
GCTAACTGGCAGGTACTACTACTTCTAAGTACACTGTACTGTACTCTACG
TACCGCACATGCTCTATATACATACTCATATTTCAAGTACAGTATGTGCT
CGTACCACAAGCAACTTTTTCACAGTGAAGTACTCGTAAAGCTTGAGGAA
ACTCTCCCTGCGCGACCGAATGGCCCGCCGCACACCGGTCGGCACTCACA
CGGCCGTGGATGCCAAAAACACCAAACACTGTACAACACCAAAGACCAAG
TCATCATGGCAATCCTCCAACACCCCGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:974940..975668+

>mRNA_S-ischiensis_contig13.2952.1 ID=mRNA_S-ischiensis_contig13.2952.1|Name=mRNA_S-ischiensis_contig13.2952.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1410bp|location=Sequence derived from alignment at S-ischiensis_contig13:974940..975668+ (Schizocladia ischiensis KU_0333)
ATGCAGCTTTTTCCGTCACCGGGCATAGTAGGTAGGAGGCGGTACTTTCA
GTGGCCCAAGTACTTTGCACTTGAAGCGAAAATGCACAACTTCATGAGAT
CTGGGCCCCGTCCCAAAAAGCGAGACCTCACCAGAAGTGCATCCAGTAGT
TTGGGCGCATGGAGCGGTTTCAGTCACGGGGCACAGCACACTTGGCTAGG
AGGCGGCACTTTCGGCAGCCAAAGCAAGAAGTGGTTTGGAGTGAAAACAC
GCCAAGGCCAACTGAGCTCCGGCTCCCGTCTTTCCCAGGGTTGGCCGGGC
AGAAGAGCAAATAAACAAGGCGAAGCGTTCTTTGTTATACTATTTGCTGA
GGTACCTCCAGAGGTACCCACTGGATCTAGATACCCCAGATGTTTGTGCT
TCGACAGTGCTTGTGTAATTACAAGTGCTAACTGGCAGGTACTACTACTT
CTAAGTACACTGTACTGTACTCTACGTACCGCACATGCTCTATATACATA
CTCATATTTCAAGTACAGTATGTGCTCGTACCACAAGCAACTTTTTCACA
GTGAAGTACTCGTAAAGCTTGAGGAAACTCTCCCTGCGCGACCGAATGGC
CCGCCGCACACCGGTCGGCACTCACACGGCCGTGGATGCCAAAAACACCA
AACACTGTACAACACCAAAGACCAAGTCATCATGGCAATCCTCCAACACC
CCGCCATGCAGCTTTTTCCGTCACCGGGCATAGTAGGTAGGAGGCGGTAC
TTTCAGTGGCCCAAGTACTTTGCACTTGAAGCGAAAATGCACAACTTCAT
GAGATCTGGGCCCCGTCCCAAAAAGCGAGACCTCACCAGAAGTGCATCCA
GTAGTTTGGGCGCATGGAGCGGTTTCAGTCACGGGGCACAGCACACTTGG
CTAGGAGGCGGCACTTTCGGCAGCCAAAGCAAGAAGTGGTTTGGAGTGAA
AACACGCCAAGGCCAACTGAGCTCCGGCTCCCGTCTTTCCCAGGGTTGGC
CGGGCAGAAGAGCAAATAAACAAGGCGAAGCGTTCTTTGTTATACTATTT
GCTGAGGTACCTCCAGAGGTACCCACTGGATCTAGATACCCCAGATGTTT
GTGCTTCGACAGTGCTTGTGTAATTACAAGTGCTAACTGGCAGGTACTAC
TACTTCTAAGTACACTGTACTGTACTCTACGTACCGCACATGCTCTATAT
ACATACTCATATTTCAAGTACAGTATGTGCTCGTACCACAAGCAACTTTT
TCACAGTGAAGTACTCGTAAAGCTTGAGGAAACTCTCCCTGCGCGACCGA
ATGGCCCGCCGCACACCGGTCGGCACTCACACGGCCGTGGATGCCAAAAA
CACCAAACACTGTACAACACCAAAGACCAAGTCATCATGGCAATCCTCCA
ACACCCCGCC
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