mRNA_S-ischiensis_contig13.2934.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2934.1
Unique NamemRNA_S-ischiensis_contig13.2934.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:774280..775400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size325
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2934.1prot_S-ischiensis_contig13.2934.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 774280..775400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.779705-CDS-S-ischiensis_contig13:774279..7743471622815672.779705-CDS-S-ischiensis_contig13:774279..774347Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 774280..774347 +
1695739842.564411-CDS-S-ischiensis_contig13:774279..7743471695739842.564411-CDS-S-ischiensis_contig13:774279..774347Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 774280..774347 +
1622815672.7936468-CDS-S-ischiensis_contig13:774885..7749941622815672.7936468-CDS-S-ischiensis_contig13:774885..774994Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 774886..774994 +
1695739842.5754118-CDS-S-ischiensis_contig13:774885..7749941695739842.5754118-CDS-S-ischiensis_contig13:774885..774994Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 774886..774994 +
1622815672.8139045-CDS-S-ischiensis_contig13:775253..7754001622815672.8139045-CDS-S-ischiensis_contig13:775253..775400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 775254..775400 +
1695739842.586333-CDS-S-ischiensis_contig13:775253..7754001695739842.586333-CDS-S-ischiensis_contig13:775253..775400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 775254..775400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2934.1

>prot_S-ischiensis_contig13.2934.1 ID=prot_S-ischiensis_contig13.2934.1|Name=mRNA_S-ischiensis_contig13.2934.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp
MGGWEEAGEAGPWPPNGTGPGKLFLVWQARSDAELYLQDWFRAWRDRSGG
RFNYLFLVQDPAAVSRAQENRRGRSAERKARHNSDIEARPSGDEGGGSAD
ERASRPAR
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mRNA from alignment at S-ischiensis_contig13:774280..775400+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2934.1 ID=mRNA_S-ischiensis_contig13.2934.1|Name=mRNA_S-ischiensis_contig13.2934.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1121bp|location=Sequence derived from alignment at S-ischiensis_contig13:774280..775400+ (Schizocladia ischiensis KU_0333)
ATGGGGGGGTGGGAGGAAGCGGGGGAGGCTGGGCCGTGGCCGCCGAATGG
GACGGGTCCCGGGAAGCTGTGAGTGAAGGGGGGGTTGTTCAGTGTGGTTG
GCAGGGTTGGCACTTAATCCCGAAGCGGTGCTCTTTTAGGACCTTAATTG
GAGGTGATCAGGGGTAACTAGACCTAGAATGAAGGCTAGTTAAGCTAGGC
CCCACAGTAGTTGACCTCTAAGTGCCACCCTGAGGGGGGTGGGTGCGGGA
TGTTTGTAGACTGTCGTGGTGGTGGGTGGGTGGATGTGTTGCAGGAGAAC
GAGTACTTCCAAGCACAGCAGCTGTGCCTGCAGCAGTGGCAGTGCCAGGG
TTGGCACTTGACCCCTAGGTGGTGCCCTTTTAGGCCCTCAATTAGAGGTA
ACTAGGGGTAATTAGACCTATGCTGAGGGCTCATTAGGCCCTAGCTAACC
TCTAAGTGCCAACCCTGCGAGCGCACAGGTGCCTGGTTTTTGGCAGGCCT
GGTCGGACTCCGAGCTGATCCATAGGTAGTTAGGGGTAATTAGACCTACA
ATGAAGGCCAATTAGGCCCCAATTAACCTCTGAGTGCCAACCTTGCCAAC
GGACAGGTTCCTGGTTTGGCAGGCCCGGTCGGACGCCGAGCTGTACCTGC
AGGACTGGTTCCGGGCCTGGCGGGACCGCAGCGGCGGCCGCTTCAACTAC
CTCTTCCTCGTTCAGGTGCGTGCAAGCACCGGTACGATACGCGAGTGCGC
GTGGGCGCGTGCACGCGTGCGCCCGAGCACGCGTTCGAGAACACTCAATT
CTTAAATGTGATCACCATTACTGTAATACGAGAGCACTCAATCTCACACA
CGTGCGACTGTACTCGTTTTGCAATTTGTGCTTGGAGGTATGAATCACCG
CTAACTGTCGTGGAATCGAGATCCCAACGGACAAAATTCCGCCCCCCACC
CCACCCCCCCTTCACCCCCCCCAGGACCCAGCAGCTGTATCGCGTGCCCA
GGAGAACCGCCGGGGGCGCAGCGCGGAGCGCAAGGCGCGCCACAACTCGG
ACATAGAAGCCCGCCCCAGTGGCGACGAGGGGGGGGGGTCTGCGGACGAA
CGGGCCAGCAGGCCAGCACGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:774280..775400+

>mRNA_S-ischiensis_contig13.2934.1 ID=mRNA_S-ischiensis_contig13.2934.1|Name=mRNA_S-ischiensis_contig13.2934.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig13:774280..775400+ (Schizocladia ischiensis KU_0333)
ATGGGGGGGTGGGAGGAAGCGGGGGAGGCTGGGCCGTGGCCGCCGAATGG
GACGGGTCCCGGGAAGCTATGGGGGGGTGGGAGGAAGCGGGGGAGGCTGG
GCCGTGGCCGCCGAATGGGACGGGTCCCGGGAAGCTGTTCCTGGTTTGGC
AGGCCCGGTCGGACGCCGAGCTGTACCTGCAGGACTGGTTCCGGGCCTGG
CGGGACCGCAGCGGCGGCCGCTTCAACTACCTCTTCCTCGTTCAGGTTCC
TGGTTTGGCAGGCCCGGTCGGACGCCGAGCTGTACCTGCAGGACTGGTTC
CGGGCCTGGCGGGACCGCAGCGGCGGCCGCTTCAACTACCTCTTCCTCGT
TCAGGACCCAGCAGCTGTATCGCGTGCCCAGGAGAACCGCCGGGGGCGCA
GCGCGGAGCGCAAGGCGCGCCACAACTCGGACATAGAAGCCCGCCCCAGT
GGCGACGAGGGGGGGGGGTCTGCGGACGAACGGGCCAGCAGGCCAGCACG
GGACCCAGCAGCTGTATCGCGTGCCCAGGAGAACCGCCGGGGGCGCAGCG
CGGAGCGCAAGGCGCGCCACAACTCGGACATAGAAGCCCGCCCCAGTGGC
GACGAGGGGGGGGGGTCTGCGGACGAACGGGCCAGCAGGCCAGCACGG
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