mRNA_S-ischiensis_contig13.2928.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2928.1
Unique NamemRNA_S-ischiensis_contig13.2928.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:687716..688509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size726
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2928.1prot_S-ischiensis_contig13.2928.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 687716..688319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.6489205-CDS-S-ischiensis_contig13:687715..6882191622815672.6489205-CDS-S-ischiensis_contig13:687715..688219Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 687716..688219 -
1695739842.4805317-CDS-S-ischiensis_contig13:687715..6882191695739842.4805317-CDS-S-ischiensis_contig13:687715..688219Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 687716..688219 -
1622815672.659956-CDS-S-ischiensis_contig13:688289..6883191622815672.659956-CDS-S-ischiensis_contig13:688289..688319Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 688290..688319 -
1695739842.4929466-CDS-S-ischiensis_contig13:688289..6883191695739842.4929466-CDS-S-ischiensis_contig13:688289..688319Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 688290..688319 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.6746538-UTR-S-ischiensis_contig13:688319..6885091622815672.6746538-UTR-S-ischiensis_contig13:688319..688509Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 688320..688509 -
1695739842.505902-UTR-S-ischiensis_contig13:688319..6885091695739842.505902-UTR-S-ischiensis_contig13:688319..688509Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 688320..688509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2928.1

>prot_S-ischiensis_contig13.2928.1 ID=prot_S-ischiensis_contig13.2928.1|Name=mRNA_S-ischiensis_contig13.2928.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=178bp
MTAISIRALQAAVKYCTSKYSNSSYRKLQRSTAHRPPIPCTPEAAQPAQE
LYLCSSVLILYRNRRRDLAPPCQFSGEHFSPNTGRIYAGKLGKSPSGPGG
LFGEFSGQFRTFPARYIPPKMSRGGKISPTITVLLPEVPMLRSICTTVAT
VQYDSDRRPGRLGAVHAHMMRRSTRPPH
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mRNA from alignment at S-ischiensis_contig13:687716..688509-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2928.1 ID=mRNA_S-ischiensis_contig13.2928.1|Name=mRNA_S-ischiensis_contig13.2928.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=794bp|location=Sequence derived from alignment at S-ischiensis_contig13:687716..688509- (Schizocladia ischiensis KU_0333)
ACGAGTACATGGATCGATGTTATCTGCCTGTACTGTGCTGTAGTAAAGCT
TTCTTCAAGCACGGGAACCGTAGCACTCGATCTCTACTCTCTGACGAACA
CAAAGCCAAACCACGAGCATCCCGGCAAGCACTGAGTCTACTACACTACT
ACTATGTACCGTACAGCAGCTACTCTACACAGTACAGGTCATGACTGCGA
TTTCAATACGCGCCCTACAGGCAGCGGTGAAGTACTGTACTTCGAAGTAC
AGCAACAGTCATGATTGCGATTTCAATACGCGCCCTACAGGCAGCGGTGA
AGTACTGTACTTCGAAGTACAGCAACAGCAGCTACCGTAAGCTCCAGAGA
TCTACTGCACACCGCCCCCCGATTCCCTGCACTCCGGAGGCGGCCCAACC
GGCACAAGAGCTGTACTTGTGTTCGAGTGTACTCATACTCTACCGTAACC
GTCGGAGAGATCTTGCCCCCCCATGCCAATTCTCGGGAGAACATTTCTCG
CCGAATACTGGTCGGATTTACGCGGGAAAACTCGGAAAGTCTCCCTCAGG
ACCTGGGGGACTTTTCGGAGAGTTTTCGGGACAATTCAGGACCTTCCCGG
CTAGATATATCCCCCCGAAAATGTCCCGTGGGGGCAAAATCTCTCCGACG
ATTACGGTACTACTTCCGGAAGTACCAATGCTTCGAAGCATCTGTACTAC
AGTAGCTACAGTACAGTACGACTCGGACAGAAGGCCCGGTCGCCTGGGAG
CAGTGCATGCACACATGATGCGCCGATCGACGCGGCCACCACAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:687716..688509-

>mRNA_S-ischiensis_contig13.2928.1 ID=mRNA_S-ischiensis_contig13.2928.1|Name=mRNA_S-ischiensis_contig13.2928.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1068bp|location=Sequence derived from alignment at S-ischiensis_contig13:687716..688509- (Schizocladia ischiensis KU_0333)
ATGACTGCGATTTCAATACGCGCCCTACAGATGACTGCGATTTCAATACG
CGCCCTACAGGCAGCGGTGAAGTACTGTACTTCGAAGTACAGCAACAGCA
GCTACCGTAAGCTCCAGAGATCTACTGCACACCGCCCCCCGATTCCCTGC
ACTCCGGAGGCGGCCCAACCGGCACAAGAGCTGTACTTGTGTTCGAGTGT
ACTCATACTCTACCGTAACCGTCGGAGAGATCTTGCCCCCCCATGCCAAT
TCTCGGGAGAACATTTCTCGCCGAATACTGGTCGGATTTACGCGGGAAAA
CTCGGAAAGTCTCCCTCAGGACCTGGGGGACTTTTCGGAGAGTTTTCGGG
ACAATTCAGGACCTTCCCGGCTAGATATATCCCCCCGAAAATGTCCCGTG
GGGGCAAAATCTCTCCGACGATTACGGTACTACTTCCGGAAGTACCAATG
CTTCGAAGCATCTGTACTACAGTAGCTACAGTACAGTACGACTCGGACAG
AAGGCCCGGTCGCCTGGGAGCAGTGCATGCACACATGATGCGCCGATCGA
CGCGGCCACCACATGCAGCGGTGAAGTACTGTACTTCGAAGTACAGCAAC
AGCAGCTACCGTAAGCTCCAGAGATCTACTGCACACCGCCCCCCGATTCC
CTGCACTCCGGAGGCGGCCCAACCGGCACAAGAGCTGTACTTGTGTTCGA
GTGTACTCATACTCTACCGTAACCGTCGGAGAGATCTTGCCCCCCCATGC
CAATTCTCGGGAGAACATTTCTCGCCGAATACTGGTCGGATTTACGCGGG
AAAACTCGGAAAGTCTCCCTCAGGACCTGGGGGACTTTTCGGAGAGTTTT
CGGGACAATTCAGGACCTTCCCGGCTAGATATATCCCCCCGAAAATGTCC
CGTGGGGGCAAAATCTCTCCGACGATTACGGTACTACTTCCGGAAGTACC
AATGCTTCGAAGCATCTGTACTACAGTAGCTACAGTACAGTACGACTCGG
ACAGAAGGCCCGGTCGCCTGGGAGCAGTGCATGCACACATGATGCGCCGA
TCGACGCGGCCACCACAT
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