mRNA_S-ischiensis_contig13.2910.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2910.1
Unique NamemRNA_S-ischiensis_contig13.2910.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:540180..541984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1030
Cds size1026
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.1989172-CDS-S-ischiensis_contig13:540181..5409821622815672.1989172-CDS-S-ischiensis_contig13:540181..540982Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 540182..540982 -
1695739842.2322853-CDS-S-ischiensis_contig13:540181..5409821695739842.2322853-CDS-S-ischiensis_contig13:540181..540982Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 540182..540982 -
1622815672.2132173-CDS-S-ischiensis_contig13:541759..5419841622815672.2132173-CDS-S-ischiensis_contig13:541759..541984Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 541760..541984 -
1695739842.241871-CDS-S-ischiensis_contig13:541759..5419841695739842.241871-CDS-S-ischiensis_contig13:541759..541984Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 541760..541984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2910.1prot_S-ischiensis_contig13.2910.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 540182..541984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2910.1

>prot_S-ischiensis_contig13.2910.1 ID=prot_S-ischiensis_contig13.2910.1|Name=mRNA_S-ischiensis_contig13.2910.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=342bp
PQGAGAAAAPAAAAASDRQNRPPAAAAETPARGGSDRGHAPPRRRRATAA
AAEAAEAGQDGSRPAEAGSVGGRNQAISALASPSRRKEPARARAPTPSMP
STTCTSGSTTATSTTAVPAPGVEGMVNVKQALCKDKECTKQPSYGMVGDG
GATFCAAHRQEGMVDVRNARCQEATCNRRASYGNEGDRRGTFCSAHRLEG
MVDVKNPRCQEATCNKRPSYGNEGESRAIFCAAHRVERMVNVRSARCQGA
TCNKQPNFGNEGDRRGTFCAVHLLEGMVNVVSPRCQEGMCGRQPSYGNES
DHRATFCAAHHAEGMANFRSARHQKVTSTKRPSSKKEGDNRA
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mRNA from alignment at S-ischiensis_contig13:540180..541984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2910.1 ID=mRNA_S-ischiensis_contig13.2910.1|Name=mRNA_S-ischiensis_contig13.2910.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1805bp|location=Sequence derived from alignment at S-ischiensis_contig13:540180..541984- (Schizocladia ischiensis KU_0333)
CCCCAGGGCGCAGGAGCAGCGGCGGCCCCGGCAGCTGCGGCGGCCAGCGA
CCGGCAAAACCGCCCGCCTGCCGCCGCCGCCGAAACTCCGGCCCGGGGGG
GCTCGGACAGGGGGCACGCCCCCCCGCGCCGCCGCCGCGCGACAGCGGCG
GCGGCGGAAGCGGCGGAAGCGGGGCAGGATGGGTCTCGGCCCGCCGAGGC
TGGCAGTGTGGGCGGGCGCAATCAGGTATGTCGAAGCACCTCGTCTCATT
GTTGAATGGTGTTCATTGCCGCCGTTCACGGGGGCAGTGAAGCAGCGAGG
CCTGGGGGCCTGTGTGCTGACTATGGAAGAAGTAGCATACATACCTAAGG
TGTAGTGAAGGGAGCTACAGATCCTCCTAGACTGAGTGTGCTACAGTACA
AGGGGTTGTAGAGAGTCTTGTACTTCCAGAAGTATGAGGGGACAAGAGGC
CATGTGTGTCGCTATAAACATCATGGATGCGGATGTTCTGACAAGGTAGA
CTCAGGCTCGACGTGGACTCAGGCTCGACTCGGAGTCCCGTTCCGGTGCT
CGCAAGCTCTCATTGGATGAGGCTGTTGCGCCGGTGGAAGGGATTGGCGG
GGATTGATGGGTCGGTCACTGTGATTGGTCCAGGCGGTTCGGGGGGGGGG
GATGTGTGGGACCCGTGCCCGCATCTTTTTGGTCCTTTTTTTTTTCGACG
GATCGCCCTACATAGTCGAGGTCTGAACTGCAGTAGCTTGACAGTAGCTT
GACATCACATCACATGACACTGTTCAGAGGGTCGCTACTGTAAGTAGTGC
CTATGCGTTAAGTTCGGATATACTCCCTTGGAAGCACAAGTGCAGGCAGG
CGTCTGGGGTGCCACGGGGCCCTGCCTGAGCATGTACTGGAGTACTCGTA
CTCGTATTTGTACAGCAGAATCCATCATATGACGCTGGTGCCCCTCCTCC
CTATCCCCCTCCCCCAACCCTCCCTCCCTCCCTCCCTCCTTGCCTCCCCC
AGGCCATCTCCGCTCTTGCGTCGCCTTCCAGGCGCAAGGAACCTGCCCGG
GCCAGGGCTCCCACCCCTTCTATGCCTTCCACTACTTGTACTAGTGGTTC
CACTACCGCAACATCCACAACGGCGGTACCAGCGCCGGGGGTGGAGGGCA
TGGTGAACGTGAAGCAAGCTCTTTGCAAGGACAAAGAATGCACAAAACAG
CCATCGTACGGGATGGTGGGTGACGGGGGTGCGACCTTCTGTGCCGCTCA
CCGCCAGGAGGGCATGGTGGACGTGAGGAACGCTCGTTGCCAGGAGGCGA
CGTGCAACAGGCGGGCATCCTACGGGAATGAGGGTGACCGCCGCGGGACC
TTCTGTTCCGCCCACCGCTTGGAGGGCATGGTGGACGTGAAGAACCCTCG
TTGCCAGGAGGCGACGTGCAACAAGCGGCCATCCTACGGGAATGAGGGCG
AGTCCCGCGCGATCTTCTGTGCCGCGCACCGCGTGGAGCGCATGGTGAAC
GTGAGGAGTGCTCGTTGCCAGGGCGCGACGTGCAACAAGCAGCCCAACTT
CGGCAATGAAGGGGATCGCCGGGGGACCTTCTGTGCCGTGCACCTCTTGG
AGGGCATGGTAAATGTGGTCAGTCCGCGTTGCCAGGAGGGGATGTGTGGC
AGGCAGCCTTCCTACGGGAACGAGAGTGACCACCGCGCCACTTTCTGTGC
TGCCCACCATGCGGAGGGCATGGCGAACTTCAGGAGCGCTCGTCACCAGA
AGGTGACGTCCACCAAGCGGCCATCCTCCAAGAAAGAGGGTGACAACCGT
GCCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:540180..541984-

>mRNA_S-ischiensis_contig13.2910.1 ID=mRNA_S-ischiensis_contig13.2910.1|Name=mRNA_S-ischiensis_contig13.2910.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2052bp|location=Sequence derived from alignment at S-ischiensis_contig13:540180..541984- (Schizocladia ischiensis KU_0333)
CCCCAGGGCGCAGGAGCAGCGGCGGCCCCGGCAGCTGCGGCGGCCAGCGA
CCGGCAAAACCGCCCGCCTGCCGCCGCCGCCGAAACTCCGGCCCGGGGGG
GCTCGGACAGGGGGCACGCCCCCCCGCGCCGCCGCCGCGCGACAGCGGCG
GCGGCGGAAGCGGCGGAAGCGGGGCAGGATGGGTCTCGGCCCGCCGAGGC
TGGCAGTGTGGGCGGGCGCAATCAGCCCCAGGGCGCAGGAGCAGCGGCGG
CCCCGGCAGCTGCGGCGGCCAGCGACCGGCAAAACCGCCCGCCTGCCGCC
GCCGCCGAAACTCCGGCCCGGGGGGGCTCGGACAGGGGGCACGCCCCCCC
GCGCCGCCGCCGCGCGACAGCGGCGGCGGCGGAAGCGGCGGAAGCGGGGC
AGGATGGGTCTCGGCCCGCCGAGGCTGGCAGTGTGGGCGGGCGCAATCAG
GCCATCTCCGCTCTTGCGTCGCCTTCCAGGCGCAAGGAACCTGCCCGGGC
CAGGGCTCCCACCCCTTCTATGCCTTCCACTACTTGTACTAGTGGTTCCA
CTACCGCAACATCCACAACGGCGGTACCAGCGCCGGGGGTGGAGGGCATG
GTGAACGTGAAGCAAGCTCTTTGCAAGGACAAAGAATGCACAAAACAGCC
ATCGTACGGGATGGTGGGTGACGGGGGTGCGACCTTCTGTGCCGCTCACC
GCCAGGAGGGCATGGTGGACGTGAGGAACGCTCGTTGCCAGGAGGCGACG
TGCAACAGGCGGGCATCCTACGGGAATGAGGGTGACCGCCGCGGGACCTT
CTGTTCCGCCCACCGCTTGGAGGGCATGGTGGACGTGAAGAACCCTCGTT
GCCAGGAGGCGACGTGCAACAAGCGGCCATCCTACGGGAATGAGGGCGAG
TCCCGCGCGATCTTCTGTGCCGCGCACCGCGTGGAGCGCATGGTGAACGT
GAGGAGTGCTCGTTGCCAGGGCGCGACGTGCAACAAGCAGCCCAACTTCG
GCAATGAAGGGGATCGCCGGGGGACCTTCTGTGCCGTGCACCTCTTGGAG
GGCATGGTAAATGTGGTCAGTCCGCGTTGCCAGGAGGGGATGTGTGGCAG
GCAGCCTTCCTACGGGAACGAGAGTGACCACCGCGCCACTTTCTGTGCTG
CCCACCATGCGGAGGGCATGGCGAACTTCAGGAGCGCTCGTCACCAGAAG
GTGACGTCCACCAAGCGGCCATCCTCCAAGAAAGAGGGTGACAACCGTGC
CGCCATCTCCGCTCTTGCGTCGCCTTCCAGGCGCAAGGAACCTGCCCGGG
CCAGGGCTCCCACCCCTTCTATGCCTTCCACTACTTGTACTAGTGGTTCC
ACTACCGCAACATCCACAACGGCGGTACCAGCGCCGGGGGTGGAGGGCAT
GGTGAACGTGAAGCAAGCTCTTTGCAAGGACAAAGAATGCACAAAACAGC
CATCGTACGGGATGGTGGGTGACGGGGGTGCGACCTTCTGTGCCGCTCAC
CGCCAGGAGGGCATGGTGGACGTGAGGAACGCTCGTTGCCAGGAGGCGAC
GTGCAACAGGCGGGCATCCTACGGGAATGAGGGTGACCGCCGCGGGACCT
TCTGTTCCGCCCACCGCTTGGAGGGCATGGTGGACGTGAAGAACCCTCGT
TGCCAGGAGGCGACGTGCAACAAGCGGCCATCCTACGGGAATGAGGGCGA
GTCCCGCGCGATCTTCTGTGCCGCGCACCGCGTGGAGCGCATGGTGAACG
TGAGGAGTGCTCGTTGCCAGGGCGCGACGTGCAACAAGCAGCCCAACTTC
GGCAATGAAGGGGATCGCCGGGGGACCTTCTGTGCCGTGCACCTCTTGGA
GGGCATGGTAAATGTGGTCAGTCCGCGTTGCCAGGAGGGGATGTGTGGCA
GGCAGCCTTCCTACGGGAACGAGAGTGACCACCGCGCCACTTTCTGTGCT
GCCCACCATGCGGAGGGCATGGCGAACTTCAGGAGCGCTCGTCACCAGAA
GGTGACGTCCACCAAGCGGCCATCCTCCAAGAAAGAGGGTGACAACCGTG
CC
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