mRNA_S-ischiensis_contig13.2908.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2908.1
Unique NamemRNA_S-ischiensis_contig13.2908.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig13.2908.1 vs. uniprot
Match: A0A6H5KIR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIR6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.420e-10
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:   11 GDGRLRAACLQVVFALVYR-----------GGGTPAGAGVTADEIVHVACSALDEGNPVEVRVSGLKVLLAVLA 199
            G G LRAACLQ +FALVYR           G G+  GA  T D+++ VAC AL +    EVRVSGLK+LL V+A
Sbjct: 1563 GSGLLRAACLQALFALVYRTKNVFEGGAISGSGSRGGASCTCDDVMQVACDALGKDQHPEVRVSGLKLLLGVVA 1636
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BLAST of mRNA_S-ischiensis_contig13.2908.1 vs. uniprot
Match: D7G4H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H8_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.530e-8
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:   11 GDGRLRAACLQVVFALVYRG-----GGTPAGAG------VTADEIVHVACSALDEGNPVEVRVSGLKVLLAVLA 199
            G G LRAACLQ +FALVYR      GG  +G+G       T D ++ VAC AL +    EVRVSGLK+LL V+A
Sbjct: 1472 GSGLLRAACLQALFALVYRTKNVFEGGAISGSGSRVDVSCTCDGVMQVACDALGKDQHPEVRVSGLKLLLGVVA 1545
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIR6_9PHAE1.420e-1051.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4H8_ECTSI1.530e-851.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:475752..479203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size271
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2908.1prot_S-ischiensis_contig13.2908.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 475752..479202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.1353977-CDS-S-ischiensis_contig13:475751..4757941622815672.1353977-CDS-S-ischiensis_contig13:475751..475794Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 475752..475794 +
1695739842.203222-CDS-S-ischiensis_contig13:475751..4757941695739842.203222-CDS-S-ischiensis_contig13:475751..475794Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 475752..475794 +
1622815672.1492062-CDS-S-ischiensis_contig13:478332..4784461622815672.1492062-CDS-S-ischiensis_contig13:478332..478446Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 478333..478446 +
1695739842.212221-CDS-S-ischiensis_contig13:478332..4784461695739842.212221-CDS-S-ischiensis_contig13:478332..478446Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 478333..478446 +
1622815672.161945-CDS-S-ischiensis_contig13:479089..4792021622815672.161945-CDS-S-ischiensis_contig13:479089..479202Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 479090..479202 +
1695739842.2228703-CDS-S-ischiensis_contig13:479089..4792021695739842.2228703-CDS-S-ischiensis_contig13:479089..479202Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 479090..479202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2908.1

>prot_S-ischiensis_contig13.2908.1 ID=prot_S-ischiensis_contig13.2908.1|Name=mRNA_S-ischiensis_contig13.2908.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=90bp
GRRGGWAAASGLPSGGVCARVPWRRHPGGGRRNRRRDCPRGLQCPGRGEP
RRGARERPQGPPGRPRGQTHHRRTTTTSTGTTTTTTTGSR
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mRNA from alignment at S-ischiensis_contig13:475752..479203+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2908.1 ID=mRNA_S-ischiensis_contig13.2908.1|Name=mRNA_S-ischiensis_contig13.2908.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3452bp|location=Sequence derived from alignment at S-ischiensis_contig13:475752..479203+ (Schizocladia ischiensis KU_0333)
GGGCGGAGGGGGGGATGGGCGGCTGCGAGCGGCTTGCCTTCAGGTGGGTT
TTGTCCGTCCGGACAATCAGTGTGGGTGCCAACTTACTGTACGCGTTTTC
CACCAATTGAACGGCCGGGTTTCCCGTGAGCGACCGAATTTGGTTGAGTG
GGCGACCCAGCACACTGTCGAACCGATGGGCTTTATTGACCGACCCGTGC
TCTTTCGGCCAGTCAGCGCGACCGATGTGTGCTATTCGGCCGATCACCGT
GCTCTCTTGGCCAATGACTGTGACCGACGCACACGCGTCGGCCAGTCGGT
TTGACCGGCCTTGTCAAGCTTTGTGGCAGTGTGACTCGACATTACAGCAG
GTCGATTGTAGGCTCAGAGGAGGGGAGCACCTTGTGTTGCAGTGCATTGC
ATGGTACTGTTCGTTTGGGATAGACTCGAGTACTTCGGAGCAGCTACTGC
GAGGTTTTGTAGATATGAGGAGGCGTTTTGTAGCCGCGGTCCAAGCTTCT
AGAAAAGGCTCACGCCGTCCCAGGTGCATGCAGCCGTAAAGATAATTCAC
TCTCCTTGAAACCACACCCTGCGGGGAAGGCGCATGAAGCGCTGATGGGC
AGTGCCATGGTGCACGACGCCCTTGTGCTTGACAGGTTATGAGCCCTGTG
GTGCAGTGGTAGGAGTAGTCCGGTGTGAGAACGGCCGTGAGCAAGTTTCG
GCGTGGGCGTAGTCCGAAACCGAGGGAGGGCGCAGCGACGCATCCTTGGC
CTGGGCCTAAATTGCGGGGAGGGCACTGCGAGGTGTCCTGGGTGCGGCCC
GAAACGGAGAAGCCGATCTATGGAATGTGGCTCACGGTGTCGGTACAGGC
TGTATCGGGTGAAGTCCAGCTCGCCGACTGGCACGAGGGAGCCTGCTTGG
CTCGCGGCGACGGTACTGTTGTATCGGTTGAAGTCCGGCTCGTCAACCGG
CAGAGGGAGGGCGCGGCGATGTGTCCTGTTGTAAGGCGCGCAGTGCAGCC
TAAAGAAGGCCGGGCTTGGGCTCAAGACGGGGATCTGTGGGCTGAGGAGC
CTGTGTGGGGATGGCTGACAAGTCGGTCAAGTCTGTCCCGTTTGACGGCA
AGGAGGGGAGCTTTGGCGTGTGGCGGGCAAGGTTCGAGGCCTGGATGCAG
CTCAAGGGCCTCTACGAGGTCATGATTGGAGCGGAGCCGGAGGCAGCGAC
CCGGGAGATGGCCGCGGAGCACAAGAGGAAGCTCCAACAAGTCTACAACT
ACCTGGTCATGTCGTTGGATCCGAGCAGTGTAGGGGTTGTGGTAGTTGGG
GGCGAGCGGGACGGTGCGAAGGCGTGGAAAATATCCTAGATAAGTTTGAG
TCCACGAGTGCCACCCGTGTGCTGGGTCTGTACAAGCGTCTAGTGCAGAT
CAAGATGGGGGAAGACTCGTGGGATCCAGAGGAAATCATGTAGAGATAGA
CACCCTCTGCAGGCAGGTAGGTGAGCTAGAGGTCGAGATCTCGGAGACAT
TGAAGTGCTGCATTCTTCTTGTGGCCTTGTCTTCGCAGTACGACAGTCTC
AGGGTAGTCTTGGAGAACAAGGCAGACCTCAAGTATCCGGAGTTTGTGGA
TTCCATCAGGGCGCACTACCGCCGTCGGGCTGATGCAGGGGAGGACAGAG
GTAAGAGCAAGGTGGGGATGTTCCCGGGCAAGACGGTCTTGCAGGCTCAG
GTACACGCCGCGCGTATTCGTGGCAAGTGCTGGAACTGTGGTAAGGTGGG
CCATAGGAGCAACCAGTGTCCTAACCCCACGAAGCAGACCCCTCGTAAGC
AGGAGGCAAAGCAACAGGCTAAGCAGCAGGACACTAAGTCGGAGCAGTCT
GGCAGTGTGTGGCGCGTTGCTGCGGCCGCCGGTAAGAAGTGCGGACGGTG
TGGGGGTGTGGGTCACTTCGCGAGTGCCCGTCGCCGGCGCGCGTTGCGGT
ATCCAACTTCAGCCAGGAGCGGGGAAGGCCTTTTGCGTACGCGCACGAGG
AGGAGAAAGGAGCAGGATGAGACTTGGGGTGGCTGCCAGATCAGGCAGGC
GCCGCGAGTGCGGGGGTCACCGCGGACTAGTCATACCCTCTGAATGTGCC
GCGGCCGAGGGTGCGGTTACGCGTGACATAGGTGTGTGTTGCGCCAGGGA
TGTGTAGCAAAATCGACTACAGTAGATATCTCATCGAGGGGGCGTGTCAA
GCTTTGTGGCAGTGCGACTCGACATTACAGTAGGTCGATGGTAGGCTCAG
AGGAGGGGAGCACCTTGTGTTGCAGTGCATTGCATGGTCCTATTCGTTTG
GGATAGACTGGAGTACTTCGGAGCAGTTGCTGCAAGGTTTGGTAGATATG
AGGAGGCGTTTTGTAGCCGCGGTCCAAGCTTCTAGAAAAGGCGCACGCCG
TCCAAGGTGCATGCAGCCGTAAAGATTATTCACTCTCCTTGACACCACAC
CCTGCGGGGAAGGCGTATGAAGCGCTGATGGGCGGTGTCATGGTGCACGA
CGCCCTTGTGCTTGACAGGCCTGTACGCTTTGCCCGATGGACTCATGAGT
GCCTGCTACCCCCCCCTTCGGCGAGGAGCAGGTGGTGTTTGCGCTCGTGT
ACCGTGGCGGAGGCACCCCGGCGGGGGCAGGCGTAACCGCCGACGAGATT
GTCCACGTGGCCTGCAGTGCCCTGGACGAGGGGAACCCCGTCGAGGTGAT
GTGATGTGATGTGGTGTGTGATGTGGTGTGGTGTGATGCGGTGCGATGTG
ATGTGATGCGATGTGGTGTGGTGCAATGTGATGTGACGCGATTCGATGTG
ATGCAACGTGGTATACAATGCGATGGGATGCGACGCGTGATGCGATGCGA
TGTGATGTGATGCGGTGTGGTGTGATGTGATGCGATGCAATGTGATGAGA
TGTGATGCGATGCGATACGATGTGATGTGATGTGAGATGTGTTGTGATGT
GATGTGTGCCCCCTTGCAGCGAGTAACTCGTTTGCCGTCGCATGCTGTCG
CGTCGTATCATCATTCATGCGGCGTGGCGTGATGTGATGCGATGTAATGT
GATGTGATGTGATGCAACGCGATGTGGTGTGGTGTGGTGTGAGGCGATGC
GATGTGATGTGATATGACGCGGCGCAATGCGACTCGACGCGATGCCATGC
CATGTGATGGGCGCTCCAAAGTGCCGTAGCGTGCTGTACTGCACGTTGCA
ACTAGTCTTTCGCAAGAAGACAAACAAGCAAGTGGGAAAGAAGAGGTGTC
CCTATTGTCCCTACTTGCTTCGAAGTACTTGTTGCAGTAGTTGTACGTCA
CATGAAATCACACCACAACGCTACCGCACTTGTTGCAGGTGCGCGTGAGC
GGCCTCAAGGTCCTCCTGGCCGTCCTCGCGGGCAAACACACCACCGTCGC
ACCACAACCACCAGCACCGGCACCACCACCACCACCACCACCGGCAGCCG
CC
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:475752..479203+

>mRNA_S-ischiensis_contig13.2908.1 ID=mRNA_S-ischiensis_contig13.2908.1|Name=mRNA_S-ischiensis_contig13.2908.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig13:475752..479203+ (Schizocladia ischiensis KU_0333)
GGGCGGAGGGGGGGATGGGCGGCTGCGAGCGGCTTGCCTTCAGGGGCGGA
GGGGGGGATGGGCGGCTGCGAGCGGCTTGCCTTCAGGTGGTGTTTGCGCT
CGTGTACCGTGGCGGAGGCACCCCGGCGGGGGCAGGCGTAACCGCCGACG
AGATTGTCCACGTGGCCTGCAGTGCCCTGGACGAGGGGAACCCCGTCGAG
GTGGTGTTTGCGCTCGTGTACCGTGGCGGAGGCACCCCGGCGGGGGCAGG
CGTAACCGCCGACGAGATTGTCCACGTGGCCTGCAGTGCCCTGGACGAGG
GGAACCCCGTCGAGGTGCGCGTGAGCGGCCTCAAGGTCCTCCTGGCCGTC
CTCGCGGGCAAACACACCACCGTCGCACCACAACCACCAGCACCGGCACC
ACCACCACCACCACCACCGGCAGCCGCGTGCGCGTGAGCGGCCTCAAGGT
CCTCCTGGCCGTCCTCGCGGGCAAACACACCACCGTCGCACCACAACCAC
CAGCACCGGCACCACCACCACCACCACCACCGGCAGCCGC
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