mRNA_S-ischiensis_contig13.2904.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2904.1
Unique NamemRNA_S-ischiensis_contig13.2904.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:466334..467833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size178
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.9175594-CDS-S-ischiensis_contig13:466333..4663751622815671.9175594-CDS-S-ischiensis_contig13:466333..466375Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 466334..466375 +
1695739842.124921-CDS-S-ischiensis_contig13:466333..4663751695739842.124921-CDS-S-ischiensis_contig13:466333..466375Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 466334..466375 +
1622815671.9316525-CDS-S-ischiensis_contig13:467697..4678321622815671.9316525-CDS-S-ischiensis_contig13:467697..467832Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 467698..467832 +
1695739842.1337066-CDS-S-ischiensis_contig13:467697..4678321695739842.1337066-CDS-S-ischiensis_contig13:467697..467832Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 467698..467832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2904.1prot_S-ischiensis_contig13.2904.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 466334..467832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2904.1

>prot_S-ischiensis_contig13.2904.1 ID=prot_S-ischiensis_contig13.2904.1|Name=mRNA_S-ischiensis_contig13.2904.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=59bp
CLLRALRSSVPEAQELAALALGTTLSITLTAAHTRGKGAGAPQATEVNGR
AATAGGEGR
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mRNA from alignment at S-ischiensis_contig13:466334..467833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2904.1 ID=mRNA_S-ischiensis_contig13.2904.1|Name=mRNA_S-ischiensis_contig13.2904.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1500bp|location=Sequence derived from alignment at S-ischiensis_contig13:466334..467833+ (Schizocladia ischiensis KU_0333)
TGCCTGCTGCGGGCGCTGCGGAGCAGCGTGCCGGAGGCGCAGGTGGGTTT
GGGAGTACAGTAGTAGCCGGATGAAAGATGAACGTGCGCCTCAAGTGGCT
CAGGGTTGGCACTTAGAGGTTGATTAGGGCCTAATTATCCTTCATTTTAG
GTCTAATTAGCCGGATGAAAGATGAACGTGCGCCTCAAGTGGCTCAGGGT
TGGCACTCAGAGGTTAATTAGGGCCTGCTTATCCTTCATTTCAGGTCTAA
CTACCCCTAATTAAGTGCCTCTAATTGGGGGCCTAAAAGGGCACCACTTT
CAGTACAGTAGGGGATACAGTGCCTTGGCTTGTCTTTTGGCCGAAGCGAA
GGCGCGAGCGTTTCGTTGGCCAGAGAACGAACCTTGGGGGGTCTGGGGGC
GGCGGTTGCAGGGGTTTTGCCTGTTGTAGAGTTGTGAGCTGGAGCCGGTT
TTTGCCGGTCGGTTCCCGCTAACTGGTTTAACCGGCTAACCGACAGGTGG
CCTACCAGTTTTCTACAGTTATTTTCTACTTTAAAATCGTGCACATTTAC
CCTTTCGGTATAGCCGCTGAGCCCTGGATTTGGCGGTAAACCGTTGTCGG
CTTCGTACAGCTGGTAAAAACCGGCGATAAGTGGTTCAGTCACAAGTTAA
GTGGTTCCAAAAACATAACTGCTAAGAACCGGCCGAACCAAATTGGATAC
AAAACCAGTTACCAGTTAAACTGGTACGGGCCGCCAGTTCACAATCCTAG
CCTTGTGCCTTTTGTGGGCGCTGCGGAGTGGTGTAGCGGAGGCGTTCGCG
GGTGGGTCCGGCTGAGCCGTTTGCCGATTGGCCGAGGGAAAGGGTGGGCG
GGCTTGTGTGATTGGTGGGCCCAGAAACTTTTGTGCGGGGGGGGGGCGTC
ACGGGTAGACGAGAGGGTGCATGGGCTTTTGATTGGCCGAGAAGTATGGG
GGCGAGCCCGTGGGCGTGTCGTTTGCCCACAAAAGGGTGCCTGGGTTCGC
CTTAGAGTACACATCACATCACATCACATCACATTGATGCACCTCCCCCG
GGCAGTACACATCACATCACATCGCACCACCGCCGCAGGATGTGATGTGA
TGTGTACTGCACTCTAACGCACTGTAGTTTGACATCACCTCACATCAGAT
CACATTGGTGCACCTCCCCCGGGCAGTGCACATCACATCACATCACACCG
CCGCCGCATGATGTGATGTGATGTGCACTCGTACTGCACTCTAACGCGCT
GTAGTTTGACATTACATCACATGTGATGTGTACTGTACTCTAACGCACTG
TAGTTTGGCGTCACATCACATCACATGACACCACATCACATCGGTGCACT
TCCCCCGGGGGCAGGAACTCGCGGCCCTTGCCCTGGGCACCACCCTCTCC
ATCACCCTCACCGCCGCCCACACCCGAGGCAAGGGTGCAGGGGCTCCACA
AGCAACGGAGGTGAATGGAAGAGCCGCCACAGCTGGTGGTGAGGGCCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:466334..467833+

>mRNA_S-ischiensis_contig13.2904.1 ID=mRNA_S-ischiensis_contig13.2904.1|Name=mRNA_S-ischiensis_contig13.2904.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=354bp|location=Sequence derived from alignment at S-ischiensis_contig13:466334..467833+ (Schizocladia ischiensis KU_0333)
TGCCTGCTGCGGGCGCTGCGGAGCAGCGTGCCGGAGGCGCAGTGCCTGCT
GCGGGCGCTGCGGAGCAGCGTGCCGGAGGCGCAGGAACTCGCGGCCCTTG
CCCTGGGCACCACCCTCTCCATCACCCTCACCGCCGCCCACACCCGAGGC
AAGGGTGCAGGGGCTCCACAAGCAACGGAGGTGAATGGAAGAGCCGCCAC
AGCTGGTGGTGAGGGCCGGGAACTCGCGGCCCTTGCCCTGGGCACCACCC
TCTCCATCACCCTCACCGCCGCCCACACCCGAGGCAAGGGTGCAGGGGCT
CCACAAGCAACGGAGGTGAATGGAAGAGCCGCCACAGCTGGTGGTGAGGG
CCGG
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