mRNA_S-ischiensis_contig13.2894.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2894.1
Unique NamemRNA_S-ischiensis_contig13.2894.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:378165..380153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size404
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2894.1prot_S-ischiensis_contig13.2894.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 378167..380153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.5049736-CDS-S-ischiensis_contig13:378166..3782981622815671.5049736-CDS-S-ischiensis_contig13:378166..378298Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 378167..378298 -
1695739841.9029677-CDS-S-ischiensis_contig13:378166..3782981695739841.9029677-CDS-S-ischiensis_contig13:378166..378298Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 378167..378298 -
1622815671.519665-CDS-S-ischiensis_contig13:379222..3793361622815671.519665-CDS-S-ischiensis_contig13:379222..379336Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 379223..379336 -
1695739841.9152865-CDS-S-ischiensis_contig13:379222..3793361695739841.9152865-CDS-S-ischiensis_contig13:379222..379336Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 379223..379336 -
1622815671.5321965-CDS-S-ischiensis_contig13:379997..3801531622815671.5321965-CDS-S-ischiensis_contig13:379997..380153Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 379998..380153 -
1695739841.9265206-CDS-S-ischiensis_contig13:379997..3801531695739841.9265206-CDS-S-ischiensis_contig13:379997..380153Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 379998..380153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2894.1

>prot_S-ischiensis_contig13.2894.1 ID=prot_S-ischiensis_contig13.2894.1|Name=mRNA_S-ischiensis_contig13.2894.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=134bp
GAGSGSGKSRHASQGVGELAPRPHRMEDSHPDNWGVSSLNRLGAMYTHYY
AEVNRAKVKEAAKAKEKSAGGSSARAMRALMCPSPFLAEKMPSLCGPRAD
SQDTTDGKLAHSQSAPAALFPGTDGEGPEPQRER
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mRNA from alignment at S-ischiensis_contig13:378165..380153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2894.1 ID=mRNA_S-ischiensis_contig13.2894.1|Name=mRNA_S-ischiensis_contig13.2894.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1989bp|location=Sequence derived from alignment at S-ischiensis_contig13:378165..380153- (Schizocladia ischiensis KU_0333)
GGAGCGGGCAGTGGCAGCGGCAAGTCCAGGCATGCCTCCCAGGGTGTTGG
AGAACTGGCGCCGCGGCCCCACCGGATGGAGGATAGCCACCCGGATAACT
GGGGGGTCAGCAGCCTTAACCGGCTGGGGGCTATGTACACCCACTACTAC
GCCGAGGTTTGTGTGTGTTGTGGGGTGTGCTGTGTTTGTGTACTTCCAAG
TATATGTGTGTTGCAGGGGGGGGTGGGTTTGTGTTTGTTTGTGCACATGG
GTTTTTTGTGCGTGCGTGTGACAGACGGGGGTGGGGGGAGGACGAGGAGG
AGGAGGAGAATGAGGAAGAGGAGGAGGGTGGGGAGGTGCTCGTTTTCATG
TACGAGAAGAGGTTAATGCGACTGAACTGCTTATGCACCTGTAGCGCGAC
ACTCGATGCAATGCAGTGGGGTTGTACTAGGAAATGCTCGAGATTTGCGA
GGAGTAGACATGCCAATCTACAGTGCCTCCCATCCTGATGCCTCTGGCAC
ACACAAACACACACACAGGAACACGAAAGCACATACATGCACACTCACGA
AAACACACACACACACGCAGAGGCACACGAACACACAAAACACACGCACA
CACACACACACACACACACATACACACACACACACACACACACACGCCCA
CCCACATGCACACACACACACGCACACAAGGTACAAGAACACACACGCGC
ACACACAGACACCCACACACCCACGCCCACCCACCCGCCCATGCACACAC
ACATACACACACACACACAAGCACCCCAACCGGCCCACCCTCCCACCCAC
CCACACGCCTACCCCAGGTCAATCGCGCAAAGGTGAAGGAGGCGGCGAAG
GCCAAGGAGAAGAGTGCCGGGGGGTCCAGCGCACGGGCCATGCGCGCTCT
CATGTGCCCGAGCCCCTTCCTGGCGGAGAAGGCGAGCAACTTTTTCATGT
TACTGGTATACGTACAGTAGTATATATCTTAATTGCTTTGCAACACACCC
AACCGCGTGGGTCGATAGTCATTATACATGCATGGAGAAACCTATGGCGT
TCCGGGCGGAGAAGGCGAGCTTCTTTTTGTGTTACTGGTATACTTCGAAG
TACTTCGAAGTACATGTATTTTCAATTTTTTGCAATGCACCCAACCTTAT
GGAGCCGACAGATGCTTCTTTTGCATGTTACCCGTATACTTCGAAGCACT
TGGAAGGAGTATACATATTTTCAAGTTTTTACAACACACCCAAACTGCGT
GGGTCGGCAATCATTATACGTGTACTCGTGTGCAGAAGATCAAGGCTGCT
AAACTGCCGGAATATCATCGGAAGGCGAGTTCTTTTGTCAAACATTTTCA
TCTGCTGTACTGTAGGTACTGGTGTGTTTTGAAACCGAGTTTCTCCCAAC
TACAGCACTTGGGCACTTCTGTGAAACTCATTCCCCTAAACCACTAGCGC
TTGTGTTGTTCCTTATAATACAACAGTAGCGCTTGTTCGTTCAGTCGTGG
AAGGCCTAATAAAGCAACTTGTAGTAGCACGTATTCACGAGCAAAAATGC
ACTGGCACGTACCGTCCTTCACCCTTTCAACCGCACCTCCCAGCACAGCA
CTTCGATATCCCCACGCTGCGGAGGTCCAGTGATGGAATATCTAAGCAAA
TCAACCTATTTATCGACAGTACTGATCTATTTTGAGTGGCAGACAAGCTG
ATCTATATATTTGTCTATAGTCGATATTCGATAGTTTGACCAACACTAAA
TCCAAGTAGTTAGTAACGCCACCCACAAAATCAGTCGAGCCCGACAACTA
TCTAGTGATCAATGTTCCATCACTGCGGAGGTCAGACATGTCCCCCCCCC
CCCAGATGCCAAGCTTGTGTGGACCTCGCGCTGACTCCCAGGACACCACA
GACGGGAAGCTGGCACACAGCCAGTCCGCCCCCGCCGCCCTCTTTCCCGG
AACCGACGGGGAGGGGCCCGAGCCGCAGAGAGAGCGGTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:378165..380153-

>mRNA_S-ischiensis_contig13.2894.1 ID=mRNA_S-ischiensis_contig13.2894.1|Name=mRNA_S-ischiensis_contig13.2894.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=804bp|location=Sequence derived from alignment at S-ischiensis_contig13:378165..380153- (Schizocladia ischiensis KU_0333)
GGAGCGGGCAGTGGCAGCGGCAAGTCCAGGCATGCCTCCCAGGGTGTTGG
AGAACTGGCGCCGCGGCCCCACCGGATGGAGGATAGCCACCCGGATAACT
GGGGGGTCAGCAGCCTTAACCGGCTGGGGGCTATGTACACCCACTACTAC
GCCGAGGGAGCGGGCAGTGGCAGCGGCAAGTCCAGGCATGCCTCCCAGGG
TGTTGGAGAACTGGCGCCGCGGCCCCACCGGATGGAGGATAGCCACCCGG
ATAACTGGGGGGTCAGCAGCCTTAACCGGCTGGGGGCTATGTACACCCAC
TACTACGCCGAGGTCAATCGCGCAAAGGTGAAGGAGGCGGCGAAGGCCAA
GGAGAAGAGTGCCGGGGGGTCCAGCGCACGGGCCATGCGCGCTCTCATGT
GCCCGAGCCCCTTCCTGGCGGAGAAGGTCAATCGCGCAAAGGTGAAGGAG
GCGGCGAAGGCCAAGGAGAAGAGTGCCGGGGGGTCCAGCGCACGGGCCAT
GCGCGCTCTCATGTGCCCGAGCCCCTTCCTGGCGGAGAAGATGCCAAGCT
TGTGTGGACCTCGCGCTGACTCCCAGGACACCACAGACGGGAAGCTGGCA
CACAGCCAGTCCGCCCCCGCCGCCCTCTTTCCCGGAACCGACGGGGAGGG
GCCCGAGCCGCAGAGAGAGCGGATGCCAAGCTTGTGTGGACCTCGCGCTG
ACTCCCAGGACACCACAGACGGGAAGCTGGCACACAGCCAGTCCGCCCCC
GCCGCCCTCTTTCCCGGAACCGACGGGGAGGGGCCCGAGCCGCAGAGAGA
GCGG
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