mRNA_S-ischiensis_contig13.2891.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2891.1
Unique NamemRNA_S-ischiensis_contig13.2891.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:332717..333668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size404
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.3905551-CDS-S-ischiensis_contig13:332718..3328641622815671.3905551-CDS-S-ischiensis_contig13:332718..332864Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 332719..332864 -
1695739841.8372436-CDS-S-ischiensis_contig13:332718..3328641695739841.8372436-CDS-S-ischiensis_contig13:332718..332864Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 332719..332864 -
1622815671.4010558-CDS-S-ischiensis_contig13:333412..3336681622815671.4010558-CDS-S-ischiensis_contig13:333412..333668Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 333413..333668 -
1695739841.8461246-CDS-S-ischiensis_contig13:333412..3336681695739841.8461246-CDS-S-ischiensis_contig13:333412..333668Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 333413..333668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2891.1prot_S-ischiensis_contig13.2891.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 332719..333668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2891.1

>prot_S-ischiensis_contig13.2891.1 ID=prot_S-ischiensis_contig13.2891.1|Name=mRNA_S-ischiensis_contig13.2891.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=134bp
WGWVRSWGPQEAGRGRRRGFAGQACQALQGQWRGRGQVLAGCAALCTCAA
QVGGDDRADAGGVRGAVVPGHGAGVQPQAGRPQRAGDARQARHDRDVATD
RGDRDARGAPRGVYRGHHPQRRRRARAGGGGGSA
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mRNA from alignment at S-ischiensis_contig13:332717..333668-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2891.1 ID=mRNA_S-ischiensis_contig13.2891.1|Name=mRNA_S-ischiensis_contig13.2891.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=952bp|location=Sequence derived from alignment at S-ischiensis_contig13:332717..333668- (Schizocladia ischiensis KU_0333)
TGGGGCTGGGTCCGAAGCTGGGGCCCGCAAGAGGCCGGAAGAGGGCGGCG
GCGGGGGTTTGCGGGCCAAGCATGTCAAGCGCTCCAAGGCCAATGGCGCG
GGCGCGGACAAGTTCTCGCAGGTTGCGCCGCCCTTTGTACGTGCGCTGCT
CAAGTGGGTGGTGATGACCGGGCAGACGCTGGCGGCGTGCGTGGAGCCGT
CGTTCCGGGCCATGGTGCTGGCGTCCAACCCCAAGCAGGGCGTCCCCAGC
GTGCAGGTGTGTGTGTGTGTGTGTGCTTGCTTGCATGCATTCATCCATGT
CTGCTGGTCTGCATGCACTAGCGCCGGTTTTCGTGGGGTCTCTCTCTCCC
CCTCTCTCCCCCGGTGGTGTGCTCTCCGACATTCGGCTGCTGACCAGTCC
ATACCACTGTGTGTACTCACGTTGAGACGAGCTTTCTCGTCTGTGTGCAT
GCCGTGGACCCGAACGCTCCTCGTCTTTGCTCCTTCTCGTGGATTGCTGT
AGCTTTCGCCACTGGCCACGCGTCCTATGGGACGGAGCACGACGGGTATT
TCTCCGACAGAAACTGTACGAGTACTACAGTGCACATCAACATTTTCGGT
GGTCTTCGCGCAGTGCACCACGGGCCCCGGGGCGCACGAAACTCGCTAAT
TACCTCTCGCGCCCCCTCCCTCCCCCGCTCTCTCTCCCCCCTCCCTTCCC
CCCGGGGGCCCCCCCGCCCTCCCCCCGCCTCCCCCCCCCCCCCCCCCCCC
CCCCCATTTCACCCTCCCTCCCTCCCCCGCACGCCCTCCCTCCCCCTCCC
GCAGGTGATGCACGTCAAGCTCGACATGATCGGGACGTTGCTACAGACAG
GGGTGACAGAGATGCTCGCGGGGCGCCGCGTGGCGTATACCGCGGCCATC
ATCCCCAGCGGCGGCGACGTGCCAGGGCCGGCGGCGGCGGAGGCAGCGCA
AG
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:332717..333668-

>mRNA_S-ischiensis_contig13.2891.1 ID=mRNA_S-ischiensis_contig13.2891.1|Name=mRNA_S-ischiensis_contig13.2891.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=804bp|location=Sequence derived from alignment at S-ischiensis_contig13:332717..333668- (Schizocladia ischiensis KU_0333)
TGGGGCTGGGTCCGAAGCTGGGGCCCGCAAGAGGCCGGAAGAGGGCGGCG
GCGGGGGTTTGCGGGCCAAGCATGTCAAGCGCTCCAAGGCCAATGGCGCG
GGCGCGGACAAGTTCTCGCAGGTTGCGCCGCCCTTTGTACGTGCGCTGCT
CAAGTGGGTGGTGATGACCGGGCAGACGCTGGCGGCGTGCGTGGAGCCGT
CGTTCCGGGCCATGGTGCTGGCGTCCAACCCCAAGCAGGGCGTCCCCAGC
GTGCAGTGGGGCTGGGTCCGAAGCTGGGGCCCGCAAGAGGCCGGAAGAGG
GCGGCGGCGGGGGTTTGCGGGCCAAGCATGTCAAGCGCTCCAAGGCCAAT
GGCGCGGGCGCGGACAAGTTCTCGCAGGTTGCGCCGCCCTTTGTACGTGC
GCTGCTCAAGTGGGTGGTGATGACCGGGCAGACGCTGGCGGCGTGCGTGG
AGCCGTCGTTCCGGGCCATGGTGCTGGCGTCCAACCCCAAGCAGGGCGTC
CCCAGCGTGCAGGTGATGCACGTCAAGCTCGACATGATCGGGACGTTGCT
ACAGACAGGGGTGACAGAGATGCTCGCGGGGCGCCGCGTGGCGTATACCG
CGGCCATCATCCCCAGCGGCGGCGACGTGCCAGGGCCGGCGGCGGCGGAG
GCAGCGCAGTGATGCACGTCAAGCTCGACATGATCGGGACGTTGCTACAG
ACAGGGGTGACAGAGATGCTCGCGGGGCGCCGCGTGGCGTATACCGCGGC
CATCATCCCCAGCGGCGGCGACGTGCCAGGGCCGGCGGCGGCGGAGGCAG
CGCA
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