mRNA_S-ischiensis_contig13.2888.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2888.1
Unique NamemRNA_S-ischiensis_contig13.2888.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:316683..318007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size1086
Cds size648
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2888.1prot_S-ischiensis_contig13.2888.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 317033..317919 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.2022493-UTR-S-ischiensis_contig13:316682..3170321622815671.2022493-UTR-S-ischiensis_contig13:316682..317032Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 316683..317032 -
1695739841.7145627-UTR-S-ischiensis_contig13:316682..3170321695739841.7145627-UTR-S-ischiensis_contig13:316682..317032Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 316683..317032 -
1622815671.2474737-UTR-S-ischiensis_contig13:317919..3180071622815671.2474737-UTR-S-ischiensis_contig13:317919..318007Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 317920..318007 -
1695739841.7539365-UTR-S-ischiensis_contig13:317919..3180071695739841.7539365-UTR-S-ischiensis_contig13:317919..318007Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 317920..318007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.2206056-CDS-S-ischiensis_contig13:317032..3174691622815671.2206056-CDS-S-ischiensis_contig13:317032..317469Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 317033..317469 -
1695739841.7265534-CDS-S-ischiensis_contig13:317032..3174691695739841.7265534-CDS-S-ischiensis_contig13:317032..317469Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 317033..317469 -
1622815671.2337801-CDS-S-ischiensis_contig13:317708..3179191622815671.2337801-CDS-S-ischiensis_contig13:317708..317919Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 317709..317919 -
1695739841.7446675-CDS-S-ischiensis_contig13:317708..3179191695739841.7446675-CDS-S-ischiensis_contig13:317708..317919Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 317709..317919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2888.1

>prot_S-ischiensis_contig13.2888.1 ID=prot_S-ischiensis_contig13.2888.1|Name=mRNA_S-ischiensis_contig13.2888.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=216bp
MRRALPSALTRTASKNWRVHSMSLFAQQPHTTVPLDDNETCRNDAQAAEK
QPWSWSAPSTGASVPGTPCSACSPHRPRRPSLSMGGVLLELLRQLPLGVG
VEEPDHNRAAVKHEPVDPTGGVRGQVPQHTLPLLVRGDPGRHSILEHALQ
RLEHRRQHGQGVVEGNLDRRVWVRCRHEGHDGYGPEERHPADNNRPSARP
ELLVDALAIAGVSTG*
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mRNA from alignment at S-ischiensis_contig13:316683..318007-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2888.1 ID=mRNA_S-ischiensis_contig13.2888.1|Name=mRNA_S-ischiensis_contig13.2888.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1325bp|location=Sequence derived from alignment at S-ischiensis_contig13:316683..318007- (Schizocladia ischiensis KU_0333)
GTGATGCGCATGTGCAAACGAGGGCCGCATCTTCCCGTCTTCTTAGGTCG
ATTACCAGACCTAGAGTACATGGAAGTATGAGTGCTGCATGAGGCGTGCC
CTGCCCAGTGCTCTTACTCGTACAGCTTCAAAAAATTGGAGAGTCCACAG
CATGAGTCTGTTTGCCCAGCAACCCCATACAACTGTGCCCCTGGATGACA
ACGAAACTTGCAGAAATGATGCGCAGGCTGCAGAGAAGCAGCCCTGGTCG
TGGTCGGCACCGAGCACGGGCGCATCCGTACCTGGCACGCCTTGCAGCGG
TAGGTGGCCACCTTGCCCCGCGTGCACTGCTTGAACTCCACCACCTTCCC
CTGCCCCCCCGCCGCAGCGGTAGGGCGCCGGCCACACCCCGGCCGCGAGC
AGGACTGCGCGGCACGCTCCAACATTTTTGTCTGCAAGATCACCCCCTTG
CTGCGGTTTGCTCGACCCACTTCGCCGATTGCATCCCTTCCGCGCCGCCC
CTGCCGCGCGTCCCGGACCGCCCGGGCCTCCGCCTCAGCTTGTTCGCCCC
ACAGGCCCAGGCGCCCCAGCTTGTCCATGGGTGGCGTCCTCCTTGAGCTG
CTGCGGCAGCTGCCGCTGGGAGTCGGGGTTGAGGAACCGGACCACAATCG
CGCCGCAGTCAAGCATGAGCCTGTCGACCCCACGGGTGGTGTTCGCGGTC
AAGTACCACAGCACACGCTCCCTCTGCTCGTCCGCGGGGACCCCGGCCGC
CACAGCATCCTTGAGCACGCCCTGCAGAGGCTTGAGCACCGCCGCCAGCA
CGGCCAGGGCGTGGTCGAGGGGAATCTGGACCGGCGCGTCTGGGTACGCT
GCCGCCACGAAGGGCACGACGGATATGGCCCAGAGGAGAGACACCCCGCG
GACAACAACAGGCCCAGCGCCAGGCCCGAGCTGCTCGTGGACGCGCTTGC
CATAGCAGGTGTCAGCACCGGGTAGCCGCCTGGCTGCGTCATCGCGGGCC
GACACGCACGCCTCAGCAGCTGGACCCGGACTCGCTTGATCCAGGATGAG
CCGCCGAGGATGGCCAGGCAGACCCACCACAGGCGTGTTTGGGGCTTGAT
GCGCAGAAGGCTGTGCATCAGGTCGTACAAGCGCCAGCCCTCCAGAACTT
TGATGAAGAACGGGTACACGGTGTGGAGCTCGGTGTGGTCCCAGTGGAAC
GATGCCATTGGAATAAGCGCCACCAAGTCAATCGCGGCCTCCGCGACATC
ACAATCAAGGATCATGGAAGAACCTCCAACTCGAGCGACGTGTCCGCGTC
ATGGCGGCGCACTACCTCCATTGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:316683..318007-

>mRNA_S-ischiensis_contig13.2888.1 ID=mRNA_S-ischiensis_contig13.2888.1|Name=mRNA_S-ischiensis_contig13.2888.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1296bp|location=Sequence derived from alignment at S-ischiensis_contig13:316683..318007- (Schizocladia ischiensis KU_0333)
ATGAGGCGTGCCCTGCCCAGTGCTCTTACTCGTACAGCTTCAAAAAATTG
GAGAGTCCACAGCATGAGTCTGTTTGCCCAGCAACCCCATACAACTGTGC
CCCTGGATGACAACGAAACTTGCAGAAATGATGCGCAGGCTGCAGAGAAG
CAGCCCTGGTCGTGGTCGGCACCGAGCACGGGCGCATCCGTACCTGGCAC
GCCTTGCAGCGATGAGGCGTGCCCTGCCCAGTGCTCTTACTCGTACAGCT
TCAAAAAATTGGAGAGTCCACAGCATGAGTCTGTTTGCCCAGCAACCCCA
TACAACTGTGCCCCTGGATGACAACGAAACTTGCAGAAATGATGCGCAGG
CTGCAGAGAAGCAGCCCTGGTCGTGGTCGGCACCGAGCACGGGCGCATCC
GTACCTGGCACGCCTTGCAGCGCTTGTTCGCCCCACAGGCCCAGGCGCCC
CAGCTTGTCCATGGGTGGCGTCCTCCTTGAGCTGCTGCGGCAGCTGCCGC
TGGGAGTCGGGGTTGAGGAACCGGACCACAATCGCGCCGCAGTCAAGCAT
GAGCCTGTCGACCCCACGGGTGGTGTTCGCGGTCAAGTACCACAGCACAC
GCTCCCTCTGCTCGTCCGCGGGGACCCCGGCCGCCACAGCATCCTTGAGC
ACGCCCTGCAGAGGCTTGAGCACCGCCGCCAGCACGGCCAGGGCGTGGTC
GAGGGGAATCTGGACCGGCGCGTCTGGGTACGCTGCCGCCACGAAGGGCA
CGACGGATATGGCCCAGAGGAGAGACACCCCGCGGACAACAACAGGCCCA
GCGCCAGGCCCGAGCTGCTCGTGGACGCGCTTGCCATAGCAGGTGTCAGC
ACCGGGTAGCTTGTTCGCCCCACAGGCCCAGGCGCCCCAGCTTGTCCATG
GGTGGCGTCCTCCTTGAGCTGCTGCGGCAGCTGCCGCTGGGAGTCGGGGT
TGAGGAACCGGACCACAATCGCGCCGCAGTCAAGCATGAGCCTGTCGACC
CCACGGGTGGTGTTCGCGGTCAAGTACCACAGCACACGCTCCCTCTGCTC
GTCCGCGGGGACCCCGGCCGCCACAGCATCCTTGAGCACGCCCTGCAGAG
GCTTGAGCACCGCCGCCAGCACGGCCAGGGCGTGGTCGAGGGGAATCTGG
ACCGGCGCGTCTGGGTACGCTGCCGCCACGAAGGGCACGACGGATATGGC
CCAGAGGAGAGACACCCCGCGGACAACAACAGGCCCAGCGCCAGGCCCGA
GCTGCTCGTGGACGCGCTTGCCATAGCAGGTGTCAGCACCGGGTAG
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