mRNA_S-ischiensis_contig13.2881.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.2881.1
Unique NamemRNA_S-ischiensis_contig13.2881.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig13.2881.1 vs. uniprot
Match: A0A7S3YUU9_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YUU9_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 3.170e-14
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:  145 QPVGMAVNGVPIYYYHCQGSGADALALMSMDFDTCLGHASLGGDDGSTTTSATPSYLYHYHLTSLCLLAAMGLETPTSWYFWASFDPEDMVDAWPSTGNPSPVVGWARDGFP 480
            +PVG+A+NGV I          D+   ++  FD+C+GH      DG         + YHYHL   CL  ++G+ TP++  +W    P    D W +T +PSP+VG+A DGFP
Sbjct:  346 EPVGIAINGVLI----------DSAKTLTRVFDSCMGHV-----DGD--------HKYHYHLPPTCLFTSLGIVTPSNASYWLDEQPNRYGDYWNATSDPSPIVGYALDGFP 434
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BLAST of mRNA_S-ischiensis_contig13.2881.1 vs. uniprot
Match: A0A7S1XZC0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZC0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.830e-12
Identity = 52/156 (33.33%), Postives = 72/156 (46.15%), Query Frame = 1 
Query:   19 FHQCPPAQVPSQPSLNGTEALRNGTVAWGFNCSSEAEAEDVSQPVGMAVNGVPIYYYHCQG-SGADALALMSMDFDTCLGHASLGGDDGSTTTSATPSYLYHYHLTSLCLLAAMGLETPTSWYFWASFDPED-MVDAWPSTGNPSPVVGWARDGFP 480
            FH+    ++  +P LN +     G V++      +A   D   PVG+AVNGV I   H +   GA     +  D D C GH+                  YHYH   +CL+ AM L TP +   +      D  +  WPSTG PSP++G+A DGFP
Sbjct:   99 FHEYK-IRISREPKLNPS-----GVVSYAPQNPYDA---DYGDPVGIAVNGVLIIADHTKTRDGATMSTGVKWDMDNCGGHSD-------------KHQRYHYHSMPICLMRAMQLYTPDTGNDYIKAGSVDAQLALWPSTGEPSPILGFAMDGFP 232
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BLAST of mRNA_S-ischiensis_contig13.2881.1 vs. uniprot
Match: A0A7S2GMP2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GMP2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.470e-11
Identity = 52/154 (33.77%), Postives = 75/154 (48.70%), Query Frame = 1 
Query:   40 QVPSQPSLNGTEALRNGTVAWGFNCSSEAEAEDV-SQPVGMAVNGVPIYYYHC-QGSGADALAL-MSMDFDTCLGHASLGGDDGSTTTSATPSYLYHYHLTSLCLLAAMGLETPT---SWYFWASFDPEDMVDAWP-STGNPSPVVGWARDGFP 480
            +VP  PS+N +              S+ ++ + V   P+G+AVNGV I+  H  QGS  + +   M+M+ DTC GH+  G             + YHYH   +C+L AMG  TP+   ++ F  S  P      WP     PSP++G A DGFP
Sbjct:  124 KVPFSPSVNPSGPTY---------LSASSQYDQVHGDPMGIAVNGVLIFGNHSKQGSSGEVIDTGMNMNIDTCSGHSDRG-------------FRYHYHTIPICVLEAMGENTPSIGAAYLFLGS--PSAQASVWPPKQAAPSPLLGLALDGFP 253
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BLAST of mRNA_S-ischiensis_contig13.2881.1 vs. uniprot
Match: A0A7S2REI8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REI8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.030e-10
Identity = 52/154 (33.77%), Postives = 74/154 (48.05%), Query Frame = 1 
Query:   46 PSQPSLNGTEALRN--------GTVAWGFNCSSEAEAEDVSQP-VGMAVNGVPIYYYHCQGSGADALALMSMDFDTCLGHASLGGDDGSTTTSATPSYLYHYHLTSLCLLAAMGLETPTSWYFWASFDPEDMVDAWPSTGNPSPVVGWARDGFP 480
            P+ P+L G  +++N         T++ G      A   D  +  VG+AVNGVP+ +     S  +AL L +MD   C G+           T  T S+ Y Y      LL  +G+  P +  +W   DP  +   WPS G+PSP+VGWA DGFP
Sbjct:   19 PACPALGGNASVQNMHLTIPRWPTISAGEVLQGGALTTDSGRALVGVAVNGVPLVH-----SPQEALDLDAMD--NCAGY-----------TDTTSSW-YEYPTAPSSLLEELGVTVPANTSWWLLGDPGAV---WPSAGSPSPLVGWALDGFP 150
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BLAST of mRNA_S-ischiensis_contig13.2881.1 vs. uniprot
Match: A0A1Z5KFS2_FISSO (YHYH domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFS2_FISSO)

HSP 1 Score: 61.6 bits (148), Expect = 4.270e-8
Identity = 32/85 (37.65%), Postives = 44/85 (51.76%), Query Frame = 1 
Query:  238 FDTCLGHASLGGDDGSTTTSATPSYLYHYHLTSLCLLAAMGLETPTSWYFWASFDP----EDMVDAWPSTGNPSPVVGWARDGFP 480
            +D+C GH+                + YHYHL   C L ++G+E   S  +W   D      DM + +P+TG  SPV+GWARDGFP
Sbjct:  469 YDSCNGHSD-------------KKHQYHYHLPPKCFLESLGMEFAESADWWKDGDQVREYADMPNQFPATGPASPVIGWARDGFP 540
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BLAST of mRNA_S-ischiensis_contig13.2881.1 vs. uniprot
Match: A0A1Z5KFX4_FISSO (YHYH domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFX4_FISSO)

HSP 1 Score: 60.8 bits (146), Expect = 7.850e-8
Identity = 32/85 (37.65%), Postives = 43/85 (50.59%), Query Frame = 1 
Query:  238 FDTCLGHASLGGDDGSTTTSATPSYLYHYHLTSLCLLAAMGLETPTSWYFWASFDP----EDMVDAWPSTGNPSPVVGWARDGFP 480
            +D+C GH+                + YHYHL   C L ++G+E   S  +W   D      DM + +P TG  SPV+GWARDGFP
Sbjct:  447 YDSCNGHSD-------------KKHQYHYHLPPKCFLESLGIEFAESPDWWKDGDQVREYADMANQFPVTGPASPVIGWARDGFP 518
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S3YUU9_9EUKA3.170e-1436.61Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A7S1XZC0_9STRA7.830e-1233.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2GMP2_9STRA1.470e-1133.77Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2REI8_9STRA3.030e-1033.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5KFS2_FISSO4.270e-837.65YHYH domain-containing protein n=1 Tax=Fistulifera... [more]
A0A1Z5KFX4_FISSO7.850e-837.65YHYH domain-containing protein n=1 Tax=Fistulifera... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:164166..167532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog227086.JGI_V11_89682
EggNOG OGs2D4E4@1,2SUUM@2759
Ec32 ortholog descriptionYHYH domain
Ec32 orthologEc-03_002660.3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size480
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.2881.1prot_S-ischiensis_contig13.2881.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 164322..167532 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.1215403-UTR-S-ischiensis_contig13:164165..1643211622815681.1215403-UTR-S-ischiensis_contig13:164165..164321Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 164166..164321 +
1695739846.9081662-UTR-S-ischiensis_contig13:164165..1643211695739846.9081662-UTR-S-ischiensis_contig13:164165..164321Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 164166..164321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.1375926-CDS-S-ischiensis_contig13:164321..1643631622815681.1375926-CDS-S-ischiensis_contig13:164321..164363Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 164322..164363 +
1695739846.929814-CDS-S-ischiensis_contig13:164321..1643631695739846.929814-CDS-S-ischiensis_contig13:164321..164363Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 164322..164363 +
1622815681.1500075-CDS-S-ischiensis_contig13:166199..1663811622815681.1500075-CDS-S-ischiensis_contig13:166199..166381Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 166200..166381 +
1695739846.9396465-CDS-S-ischiensis_contig13:166199..1663811695739846.9396465-CDS-S-ischiensis_contig13:166199..166381Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 166200..166381 +
1622815681.160102-CDS-S-ischiensis_contig13:167432..1675321622815681.160102-CDS-S-ischiensis_contig13:167432..167532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 167433..167532 +
1695739846.9481356-CDS-S-ischiensis_contig13:167432..1675321695739846.9481356-CDS-S-ischiensis_contig13:167432..167532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 167433..167532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.2881.1

>prot_S-ischiensis_contig13.2881.1 ID=prot_S-ischiensis_contig13.2881.1|Name=mRNA_S-ischiensis_contig13.2881.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp
MAVNGVPIYYYHCQGSGADALALMSMDFDTCLGHASLGGDDGSTTTSATP
SYLYHYHLTSLCLLAAMGLETPTSWYFWASFDPEDMVDAWPSTGNPSPVV
GWARDGFP
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mRNA from alignment at S-ischiensis_contig13:164166..167532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.2881.1 ID=mRNA_S-ischiensis_contig13.2881.1|Name=mRNA_S-ischiensis_contig13.2881.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3367bp|location=Sequence derived from alignment at S-ischiensis_contig13:164166..167532+ (Schizocladia ischiensis KU_0333)
GGTTGATTTGCCTAGATATTCCATCAATGCCCGCCTGCGCAGGTGCCGTC
CCAGCCCTCGCTGAACGGGACAGAGGCGCTGCGCAACGGCACCGTGGCTT
GGGGTTTCAACTGCTCCTCGGAGGCGGAGGCGGAGGACGTTTCCCAGCCG
GTGGGCATGGCTGTGAACGGCGTGCCGATCTACTACTACCATTGCCAGGT
GCTGGATGAAGGCGGTAGAGTACGTACTTCGAAGCATATACTTTTACAAC
TCTATAGCGATATACTTCCAAGTATATGCTTCGAAGCATATGTATACTCG
AGTGTACTTCCAAGTATATATATACGGTGTACTCGAGTATGCGTGAAACA
TGGCTGCCAATGGTGTGCCGATTTAGTACTACGATTGACGGGCACTGTAT
GATGAGTGCGGCACACACTTTGATGTACTTCCAAGTATATAATTATACTT
GACAACCATGTATATAAACGAAGCATACTCGAGTATGTGCGAATACTTCG
AGATAGATGCTTCCTGGAAGTAGATCGATAGATAGACAGATAGATAGACA
GATAGATAGATAGATAGATAGATAGATAGGTCTGCAAGGGGAAGGAGGGC
TTCATTGAGTCCTGTTTTGGGACGAGCCTTTCGGCACGGTGCCTGGAACT
CGCCGCTGTCTACCACTCAAAATCGATCCATCAATCGATAGATAGGGCCT
TTTGGCACAGGGCCCGGAACTTGCTGCTTATCTACCACTCAAAACAGATA
CTTCGAAGTAGATAGATAGATAGATAGATAGAGCCTTTTGGCACGGGGCC
TGGAACTCGCCGCTTATCTACCACTCGAAACAGATAGATAGATAGATAGA
TACTTCCAACACATCTTGGGTCCAGGACCGGCGCTTCTTGGTCGTTCCGT
CGATATGAATCGATGTGATACGGACTCCAATGCCCTTTTGTGAATTTGTG
TGGAAAAGAAAAGAAGCGAGTGAAAAACAGAGGTGAGCCTACTCTTGTGA
GTTCCGGGCTCCAACGCAGCAGCCCGTGTGGTTGGGCGTCACTTCACCTC
ACAACCGATGCGTAGTTGTTCGCGCCACGTAAATTGACGTGGTGTGCACT
CTACTTTGATACACTGTAGTTTGACATCACATCGCATCGCATCGCATCAC
AGCGCATTGCAGCACACAGCATCACATCGCATCGCATCACATCGCATCGC
ATCACATCACATCGTACCACATCGATCACTTCGCCTCACCGATCCCCTTC
CCTCTCAGGGATCGGGGTACATTGACGTGGTGTGCACTCTAATACACTGC
AGTTTGACATTACATCACATTGCATCACATCCCATCGCATTGCATCGCAT
CGCATCACATGACATTGTACCTCACAACCGATGCGTAGTTTTTCCCGCCA
CGTAAATTGACGTGGTGTACGCTCTGCATACTTACTTCGGAGTATTACTC
TGTAGTTTGGCATCACATCACATCACATCGCATCGCATCGCATTGCATCA
CATCGCATCGCATCACATCACATCACATCATCCCACGTCGACCGCTTCGC
CTCACCGCTCCCCTTCCCTCTCAGGGCTCCCGGTAAACTGATCTGGTGTG
CACTCTAATACACTATAGTTTGACATCGCATCACGTCGCATCGCATCGCA
TCGCATCGCATCGCATCGCATCACATCACATCGCATCACATCGCGTCACA
TCACACCGTACCTCGCAACCGGTTCGTAGATGTTCGTGCCACGTTATACT
GACGTGGTGTGCGCTCTGATACACTGTAGTTTGACATCACATCACGTCGC
ATCGCATCGCATCGCATCGCATCACATCACATCGTACCACATCGATCGAT
GGGACAACTACGAATACGAGAACACTCAATCTCACACACACATGCGATTG
TACCTCGTTACATTTTTTCGAGTCACGTCGCATCGCATTACACCGCATCG
CATCGCATCACATGGCATCGCATCACATCACATCACATCGCATCACATCA
CATCGCCTCACCGCTCCCCTTCCTTCCCTCTCAGGGCTCCGGGGCAGACG
CGCTGGCCCTCATGTCCATGGACTTCGACACCTGCCTCGGACACGCCTCC
CTGGGTGGGGACGACGGGTCTACTACTACTAGTGCTACCCCAAGCTACTT
GTACCACTACCACCTGACCTCGCTGTGCCTGCTGGCCGCGATGGGCTTGG
AGACACCGACCTCTTGGTGAGTACTACTACTTCGAAGTAGTAGTAGTAGT
AGCAGCAGTACCGGTACCACCGCAAGCTATCGCTAGCACCTGACCCCGCT
GTGGCTGCCGGCCGGAATGGGCTTGGAGACACCGGCCTCTTGGTGAGTAC
ACCACTACTTCGAAGTACTAGTACTAGTAGTAGCAGTACCAGTACCACCG
CAAGCACTTCTACCACGCCAGGCTACTTGCACCACTACACCCCCGCTGTG
CCTGCTGGCCGCGATGGGCTTGGAGACACCGGCCTCTTGGTGAGCACCTC
GAAGTACACCATGGCCGAGTCTAGTAGGCCCGCCGCCGCCCGCCGTCCTC
ACTTCTTCAAATTGACATCGAGCGGTTTTGATCGATAAATGATGGCCTCG
TACAAGTAATGTATTGTACGTCACTACAATTTATGTGAATCATCGCCACG
TACAAGTGTACTCAAGTTGTGCTTGCTGTAGTCCGACGGTCCCGGGACCT
CGAATAGAGAAAAACGCCATAACTGTGGCGCTAATTAAACCCGAGGGGCC
TTGGCCATTTGCCGGGGGGGGGGGCATGTGGATGTGGTGGGAAACATCCG
GTATTTATCCCTTTTCCCCCCGGGGTCCGTATACTCATAGGGTTTAGTGT
GTAGGTCCAATTTGCCAGGGCGAAAAGGGTTAAGTAGCAATGTGATTGCC
ACCGTGGTTGCCAGAGTATCAACAGGAAAACAACATCGGGAGAGGTGCGG
GCGTGAAAATTCGCCTCAACTATGGCCCTTCCGTGGCTTGCCAGGTGATA
TCAGTCATTGCCCCCGTGCTAGGGTATTGAAGTGGCAAGGCCTACCAGTT
TAACCGCTAACCGGTCGTGTGACCGGTCGGCTTTAACCGGTTGTCGGTAA
CGGCTAACGTAGCGCCAAAATCAATGAATAACGGTCATGTCACCCGCTCC
GGCTACACGATTGGCCACCGGTCGGTTAACCGGGTAAACCAGTTAACTGG
TACCGACCGGTAAAACCCAGCACCAGTTCACGACACTAGCACGCACCGTA
CTCCTACAAAATGGCAGGTACTTCTGGGCGTCCTTTGACCCGGAGGACAT
GGTGGACGCCTGGCCCAGCACGGGGAACCCCTCGCCCGTGGTGGGGTGGG
CGCGCGACGGTTTCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:164166..167532+

>mRNA_S-ischiensis_contig13.2881.1 ID=mRNA_S-ischiensis_contig13.2881.1|Name=mRNA_S-ischiensis_contig13.2881.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig13:164166..167532+ (Schizocladia ischiensis KU_0333)
ATGGCTGTGAACGGCGTGCCGATCTACTACTACCATTGCCAGATGGCTGT
GAACGGCGTGCCGATCTACTACTACCATTGCCAGGGCTCCGGGGCAGACG
CGCTGGCCCTCATGTCCATGGACTTCGACACCTGCCTCGGACACGCCTCC
CTGGGTGGGGACGACGGGTCTACTACTACTAGTGCTACCCCAAGCTACTT
GTACCACTACCACCTGACCTCGCTGTGCCTGCTGGCCGCGATGGGCTTGG
AGACACCGACCTCTTGGGCTCCGGGGCAGACGCGCTGGCCCTCATGTCCA
TGGACTTCGACACCTGCCTCGGACACGCCTCCCTGGGTGGGGACGACGGG
TCTACTACTACTAGTGCTACCCCAAGCTACTTGTACCACTACCACCTGAC
CTCGCTGTGCCTGCTGGCCGCGATGGGCTTGGAGACACCGACCTCTTGGT
ACTTCTGGGCGTCCTTTGACCCGGAGGACATGGTGGACGCCTGGCCCAGC
ACGGGGAACCCCTCGCCCGTGGTGGGGTGGGCGCGCGACGGTTTCCCCGT
ACTTCTGGGCGTCCTTTGACCCGGAGGACATGGTGGACGCCTGGCCCAGC
ACGGGGAACCCCTCGCCCGTGGTGGGGTGGGCGCGCGACGGTTTCCCC
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