mRNA_S-ischiensis_contig13.2878.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig13.2878.1 vs. uniprot
Match: A0A0D2MXJ1_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MXJ1_9CHLO) HSP 1 Score: 220 bits (561), Expect = 1.230e-64 Identity = 119/245 (48.57%), Postives = 148/245 (60.41%), Query Frame = 2
Query: 170 VCEMAQETGWDQVQHNTASRVLGFRRGKERVNVYYTQRTVGTCLNHPRQGKTQLLRRNQDLDDLARIFVNPRVHTGAGYHHVHSATRPVPSVTSSSGGFRVWLNSRKDKKQFLRSISWETSSVVALAEGYLALEGHPNSRAWWGVGLTKTLADKLRGRQCSLPPAEYVALGDDDRYSVQFCDGSMQWRGGSELLTEKLQGKGKM-VDVLAFAPDGGWFVTWEDESWSCQGLPRGLFNQINGRQKS 901
V +A GW++VQHN SRVLGF +GK RVNVYYT TVGTC+N+PRQ K Q R NQ L L F +PRV TG GY+ HS TRP PS + G L S++ + + V+AL GY L H S AW V + L +K+ GRQ S PP +YV LG+ D Y VQF DGS QW SE L+++LQ + V++LAFAP GG+++ WED GLPRGL NQ+ GRQKS
Sbjct: 6 VRRLAVRWGWEEVQHNAESRVLGFVKGKHRVNVYYTTGTVGTCVNYPRQAKMQFFRHNQTLATLGNRFQDPRVDTGPGYYRRHSRTRPEPSQNRACSGVWACLASQEAEDHLFEQWDSTYTVVLALGAGYF-LVNHDGSTAWDDVPIE--LHNKVNGRQKSRPPVDYVVLGEGDYYFVQFADGSSQW-SASEALSKELQSRSDCDVELLAFAPGGGYYIMWEDGESCWLGLPRGLHNQLIGRQKS 246
BLAST of mRNA_S-ischiensis_contig13.2878.1 vs. uniprot
Match: A0A0D2KAA4_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KAA4_9CHLO) HSP 1 Score: 211 bits (537), Expect = 4.670e-61 Identity = 123/260 (47.31%), Postives = 152/260 (58.46%), Query Frame = 2
Query: 158 DVPTVCEMAQETGWDQVQHNTASRVLGFRRGKERVNVYYTQRTVGTCLNHPRQGKTQLLRRNQDLDDLARIFVNPRVHTGAGYHHVHSATRPVPSVTSSSGGFRVW--LNSRKDKKQFLRSISW-ETSSVVALAEGYLALEGHPNSRAWWGVGLTKTLADKLRGRQCSLPPAEYVALGDDDRYSVQFCDGSMQWRGGSELLTEKLQGK-GKMVDVLAFAPDGGWFVTWEDESWSCQGLPRGLFNQINGRQKSLPWIEDLS 925
D +V +A GW +VQHN SRV+GF RG ERVNVYYT TVGTC+NHPR GKTQL RRNQ L L IF +PRVHTGAGY+ HS RP S S GG ++W L S++ + L W E +V+AL GY + H + AWW V + L +K+ GRQ SLPP +YV LG+ D Y VQF DGS QW + E LQ + G V++LA GLPRGL N++ GRQKS +E L+
Sbjct: 2 DEYSVRRLAARWGWTEVQHNVESRVMGFVRGGERVNVYYTTGTVGTCVNHPRAGKTQLFRRNQTLATLGNIFQDPRVHTGAGYYRRHSDARPELSQ-DSGGGNQIWACLGSKRLEDALLDG--WDEACTVLALGAGYFTADCH-GATAWWDVPIE--LHNKVNGRQKSLPPVDYVVLGEGDDYFVQFADGSCQWSAYDHSVWEILQSREGTPVELLAXXXXXXXXXXXXXXXSCWLGLPRGLHNKLIGRQKSRAGVEFLA 255
BLAST of mRNA_S-ischiensis_contig13.2878.1 vs. uniprot
Match: A0A0D2N4I8_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N4I8_9CHLO) HSP 1 Score: 169 bits (427), Expect = 3.140e-46 Identity = 96/200 (48.00%), Postives = 115/200 (57.50%), Query Frame = 2
Query: 158 DVPTVCEMAQETGWDQVQHNTASRVLGFRRGKERVNVYYTQR---------------TVGTCLNHPRQGKTQLLRRNQDLDDLARIFVNPRVHTGAGYHHVHSATRPVPSVTSSSGGFRVWLNSRKDKKQFLRSISWETS--SVVALAEGYLALEGHPNSRAWWGVGLTKTLADKLRGRQCSLPPAEYVALGDDDRYSVQ 706
D +V +A GW +VQHN ASRV+GF RG ERVNVYYT TVGTC++HPR GKTQL RRNQ L L IF +PRVHTGAGY+ HS+TRP PS SGG +W K Q W+++ V+AL GY L H S AW GV + L +K+ GRQ SL +YV LG+ D Y VQ
Sbjct: 2 DEYSVRRLAARWGWTEVQHNVASRVMGFVRGGERVNVYYTTAPPARILPAAPAAAPGTVGTCVDHPRAGKTQLFRRNQTLATLGNIFQDPRVHTGAGYYRRHSSTRPEPSQGCGSGGHHMWARLATQKAQDHLFDQWDSTCTGVLALGAGYF-LVNHDGSTAWSGVPIE--LHNKVNGRQKSLARVDYVVLGEGDDYFVQ 198
BLAST of mRNA_S-ischiensis_contig13.2878.1 vs. uniprot
Match: A0A485L589_9STRA (Aste57867_15909 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L589_9STRA) HSP 1 Score: 102 bits (253), Expect = 9.950e-20 Identity = 89/292 (30.48%), Postives = 127/292 (43.49%), Query Frame = 2
Query: 143 SWDTWDVPTVCEMAQETGWDQVQHNTASRVLGFRRGK----ERVNVYYTQRTVGTCLNHPRQGKTQLLRRNQDLDDLARIFVNPRVHTGAGYHHVH--------SATRPVPSVTS-----------SSGGFRVW----LNSRKDKKQFLRSIS------------WETSSV----------VALAEGYLALEGHPNSRAWWGVGLTKTLADKLRGRQCSLPPAEYVALGDDDRYSVQFCDGSMQWRGGSELLTEKLQGKGKMVDVLAFAPDGGWFVTWED--ESWSCQGLPR 865
S + D V EMA G+ ++Q N SRVLGF R + ER+ VYYT TVGT ++ PRQGKTQL RR DL L R+F NPR HTG H + + TR + S+ + S G W + R+ K+Q + W+ VA+ G S AW G+ LA +L + L E+VA+G +R + + + +G + L ++L G V ++A PDG +FV ++D W PR
Sbjct: 86 STEALDFRHVREMAAMNGFREIQCNRTSRVLGFVRTRGESTERIQVYYTTGTVGTAVDPPRQGKTQLFRRGVDLRTLERLFENPRTHTGVDDHSTNDHLEDEETALTRALASIETQALVIQAQHADSRGKTADWQREAVRQREAKRQQIAVTEAQEARRAGPYCDWQLRCAEPDDMSDVGCVAVGNGGYVAVYKSGSCAWHGI--PSALAKELEKQHNKL--IEFVAVGPVER---TYDEDDIHPQGLPDGLVQELHECGGTVRLMALGPDGKYFVEFQDGRSGWPGSLTPR 370
BLAST of mRNA_S-ischiensis_contig13.2878.1 vs. uniprot
Match: A0A1E7FJA8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJA8_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 7.600e-19 Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 2
Query: 179 MAQETGWDQVQHNTASRVLGFRRGKERVNVYYTQRTVGTCLNHPRQGKTQLLRRNQDLDDLARIFVNPRVHTGAGY 406
MA+ +++ HN SR + FR +R+N+YY+ RT+GT L+HP QGKTQL RR ++DL +IF NPR H+G GY
Sbjct: 1 MAEAYDLNEISHNITSRCISFRNNNDRINIYYSTRTIGTALDHPSQGKTQLFRRKCTVEDLKKIFQNPRSHSGKGY 76
BLAST of mRNA_S-ischiensis_contig13.2878.1 vs. uniprot
Match: A0A2V0PBF5_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PBF5_9CHLO) HSP 1 Score: 92.8 bits (229), Expect = 1.400e-17 Identity = 63/179 (35.20%), Postives = 88/179 (49.16%), Query Frame = 2
Query: 395 GAGYHHVHSATRPVPSVTSSSGGFRVWLNSRKDKKQFLRSISWETSSVVALAEGYLALEGHPNSRAWWGVGLTKTLADKLRGRQCSLPPAEYVALGDDDRYSVQFCDGSMQWRG--GSELLTEKLQGKGKMVDVLAFAPDGGWFVTWEDESWSCQGLPRGLFNQINGRQKSLPWIEDLS 925
G+ YH TR V V + G L ++ + L S + ++ +AL G+ A+E + AWW + +L++K GRQ SLPP EYVALG + Y VQF DG QW G + LTE L + V +LA LP+GL+NQ+NGR+ P +E LS
Sbjct: 36 GSAYH-----TRSVDGVQERTLGITALLADQEVQDSLLEGWS-DRTATLALGSGFFAVEN--DGTAWW-QDIPHSLSNKCIGRQKSLPPVEYVALGPGESYFVQFVDGHQQWWADEGLDDLTEALHSYSESVKLLAXXXXXXXXXXXXXXXXXXYRLPQGLYNQLNGRKH--PCVEFLS 203
BLAST of mRNA_S-ischiensis_contig13.2878.1 vs. uniprot
Match: A0A7S1YZT1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZT1_TRICV) HSP 1 Score: 88.2 bits (217), Expect = 3.450e-17 Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 2
Query: 140 SSWDTWDVPTVCEMAQETGWDQVQHNTASRVLGFR-RGKERVNVYYTQRTVGTCLNHPRQGKTQLLRRNQDLDDLARIFVNPRVHTGAGYH 409
S + W V V A G +++ HN SRV+ FR + ER+NVYYT T+GT ++HP GKTQL RRN +L IF NP+ HTG GY+
Sbjct: 31 SGENQWTVDFVRRAAATYGLEEIMHNLQSRVISFRTKDNERINVYYTTHTIGTAVDHPCLGKTQLFRRNCSRKELMDIFQNPQTHTGKGYY 121
BLAST of mRNA_S-ischiensis_contig13.2878.1 vs. uniprot
Match: A0A1Z5K976_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K976_FISSO) HSP 1 Score: 90.5 bits (223), Expect = 1.620e-16 Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query: 155 WDVPTVCEMAQETGWDQVQHNTASRVLGFRRGKERVNVYYTQRTVGTCLNHPRQGKTQLLRRNQDLDDLARIFVNPRVHTGAGYHHVHSATRPVPSVTSS 454
+ + V E+A++ + ++ N SR + F + R+NVYYT TVGTC+NHP +GKTQL RRN +L ++F NPR HTG GY+ H+ + S T +
Sbjct: 22 YSIAQVREIAKQHHYKEISLNETSRGISFSKDNVRINVYYTTGTVGTCVNHPVRGKTQLFRRNLSPPELKQLFQNPRQHTGKGYYRKHAGHKWKNSQTGT 121
BLAST of mRNA_S-ischiensis_contig13.2878.1 vs. uniprot
Match: A0A7R9W7P2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7P2_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.610e-15 Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 2
Query: 266 VYYTQRTVGTCLNHPRQGKTQLLRRNQDLDDLARIFVNPRVHTGAGYHHVHSATRPVPSVTSSSGGF 466
VYYT TVGTCLNHPR+GKTQL RR+ D+D L IF NPRVHTGAGY+H S ++ + G+
Sbjct: 1 VYYTTGTVGTCLNHPRRGKTQLFRRDVDVDVLDSIFSNPRVHTGAGYYHRSSTSQRWKKGGGADNGY 67
BLAST of mRNA_S-ischiensis_contig13.2878.1 vs. uniprot
Match: A0A7S4EV82_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EV82_CHRCT) HSP 1 Score: 88.6 bits (218), Expect = 3.610e-15 Identity = 44/90 (48.89%), Postives = 54/90 (60.00%), Query Frame = 2
Query: 161 VPTVCEMAQETGWDQVQHNTASRVLGFRRGK-------ERVNVYYTQRTVGTCLNHPRQGKTQLLRRNQDLDDLARIFVNPRVHTGAGYH 409
V V +A+ +++ +N SRV+ F RVNVYYT TVG C+NHPRQG+TQL RRN L L IF +PRVHTG GYH
Sbjct: 20 VEEVRRLARHARLEEIYYNEQSRVISFAPANCDVEHDLSRVNVYYTTGTVGACINHPRQGRTQLFRRNVSLSTLPEIFRDPRVHTGTGYH 109 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig13.2878.1 >prot_S-ischiensis_contig13.2878.1 ID=prot_S-ischiensis_contig13.2878.1|Name=mRNA_S-ischiensis_contig13.2878.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=335bp MSSMYRQRTNKSIKMSSWDTWDVPTVCEMAQETGWDQVQHNTASRVLGFRback to top mRNA from alignment at S-ischiensis_contig13:148629..150072+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig13.2878.1 ID=mRNA_S-ischiensis_contig13.2878.1|Name=mRNA_S-ischiensis_contig13.2878.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1444bp|location=Sequence derived from alignment at S-ischiensis_contig13:148629..150072+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig13:148629..150072+ >mRNA_S-ischiensis_contig13.2878.1 ID=mRNA_S-ischiensis_contig13.2878.1|Name=mRNA_S-ischiensis_contig13.2878.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2010bp|location=Sequence derived from alignment at S-ischiensis_contig13:148629..150072+ (Schizocladia ischiensis KU_0333)back to top |