mRNA_S-ischiensis_contig127.2855.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig127.2855.1
Unique NamemRNA_S-ischiensis_contig127.2855.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig127.2855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig127contigS-ischiensis_contig127:11564..12159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size596
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig127.2855.1prot_S-ischiensis_contig127.2855.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig127 11657..12055 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.2514641-UTR-S-ischiensis_contig127:11563..116561622815670.2514641-UTR-S-ischiensis_contig127:11563..11656Schizocladia ischiensis KU_0333UTRS-ischiensis_contig127 11564..11656 +
1695739841.170823-UTR-S-ischiensis_contig127:11563..116561695739841.170823-UTR-S-ischiensis_contig127:11563..11656Schizocladia ischiensis KU_0333UTRS-ischiensis_contig127 11564..11656 +
1622815670.2761476-UTR-S-ischiensis_contig127:12055..121591622815670.2761476-UTR-S-ischiensis_contig127:12055..12159Schizocladia ischiensis KU_0333UTRS-ischiensis_contig127 12056..12159 +
1695739841.1932716-UTR-S-ischiensis_contig127:12055..121591695739841.1932716-UTR-S-ischiensis_contig127:12055..12159Schizocladia ischiensis KU_0333UTRS-ischiensis_contig127 12056..12159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.2637563-CDS-S-ischiensis_contig127:11656..120551622815670.2637563-CDS-S-ischiensis_contig127:11656..12055Schizocladia ischiensis KU_0333CDSS-ischiensis_contig127 11657..12055 +
1695739841.1842022-CDS-S-ischiensis_contig127:11656..120551695739841.1842022-CDS-S-ischiensis_contig127:11656..12055Schizocladia ischiensis KU_0333CDSS-ischiensis_contig127 11657..12055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig127.2855.1

>prot_S-ischiensis_contig127.2855.1 ID=prot_S-ischiensis_contig127.2855.1|Name=mRNA_S-ischiensis_contig127.2855.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=133bp
MHIVVGPNGRSQLGFADYASNSETELQICHVRFDIRPRFRKSGIGKNMFK
RGVPKPLACSSMPPSPTLAPLTCAALPAGREGMPRRPRRSGNTIVIWVLS
TRLATHSFPSPPRPTVPSSVSRSFSSGLWQRT*
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mRNA from alignment at S-ischiensis_contig127:11564..12159+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig127.2855.1 ID=mRNA_S-ischiensis_contig127.2855.1|Name=mRNA_S-ischiensis_contig127.2855.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=596bp|location=Sequence derived from alignment at S-ischiensis_contig127:11564..12159+ (Schizocladia ischiensis KU_0333)
GAGTAGGCCCGCGTGCAATGTCCTAAGTTTGCTCCAGAAAAAACGCAATC
CCAGTAAGTTAACAGCCTACTGCAGGCACGTAGGGTCCCCCTCATGCATA
TTGTAGTTGGGCCAAACGGCAGGTCGCAGCTAGGATTCGCGGATTATGCA
TCCAATTCCGAAACCGAACTTCAAATTTGCCATGTTCGGTTCGATATTCG
TCCCCGCTTTCGGAAAAGCGGGATTGGGAAAAACATGTTTAAAAGGGGGG
TGCCAAAACCTCTAGCCTGCTCATCGATGCCACCATCACCCACCCTGGCA
CCGCTCACCTGCGCGGCCCTGCCAGCCGGGAGGGAGGGCATGCCGCGGAG
GCCGCGGCGAAGCGGAAATACGATCGTTATCTGGGTTCTTTCGACCCGGC
TGGCAACACACTCATTCCCTTCGCCGCCGAGGCCCACGGTGCCCTCAAGT
GTGAGTCGGAGCTTCTCATCCGGGTTATGGCAACGCACTTAGCTGGTGAC
CCTGCGGCCCCCGGCTTCGACGCTCTGTGCCGGGCATCTTTCGTGCATGG
AGCACGCGAGCGCCTCTTGTGCGTGCTGCAGCGCCTCCAGTCCTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig127:11564..12159+

>mRNA_S-ischiensis_contig127.2855.1 ID=mRNA_S-ischiensis_contig127.2855.1|Name=mRNA_S-ischiensis_contig127.2855.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=798bp|location=Sequence derived from alignment at S-ischiensis_contig127:11564..12159+ (Schizocladia ischiensis KU_0333)
ATGCATATTGTAGTTGGGCCAAACGGCAGGTCGCAGCTAGGATTCGCGGA
TTATGCATCCAATTCCGAAACCGAACTTCAAATTTGCCATGTTCGGTTCG
ATATTCGTCCCCGCTTTCGGAAAAGCGGGATTGGGAAAAACATGTTTAAA
AGGGGGGTGCCAAAACCTCTAGCCTGCTCATCGATGCCACCATCACCCAC
CCTGGCACCGCTCACCTGCGCGGCCCTGCCAGCCGGGAGGGAGGGCATGC
CGCGGAGGCCGCGGCGAAGCGGAAATACGATCGTTATCTGGGTTCTTTCG
ACCCGGCTGGCAACACACTCATTCCCTTCGCCGCCGAGGCCCACGGTGCC
CTCAAGTGTGAGTCGGAGCTTCTCATCCGGGTTATGGCAACGCACTTAGA
TGCATATTGTAGTTGGGCCAAACGGCAGGTCGCAGCTAGGATTCGCGGAT
TATGCATCCAATTCCGAAACCGAACTTCAAATTTGCCATGTTCGGTTCGA
TATTCGTCCCCGCTTTCGGAAAAGCGGGATTGGGAAAAACATGTTTAAAA
GGGGGGTGCCAAAACCTCTAGCCTGCTCATCGATGCCACCATCACCCACC
CTGGCACCGCTCACCTGCGCGGCCCTGCCAGCCGGGAGGGAGGGCATGCC
GCGGAGGCCGCGGCGAAGCGGAAATACGATCGTTATCTGGGTTCTTTCGA
CCCGGCTGGCAACACACTCATTCCCTTCGCCGCCGAGGCCCACGGTGCCC
TCAAGTGTGAGTCGGAGCTTCTCATCCGGGTTATGGCAACGCACTTAG
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