mRNA_S-ischiensis_contig126.2851.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig126.2851.1
Unique NamemRNA_S-ischiensis_contig126.2851.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig126.2851.1 vs. uniprot
Match: A0A642URS6_DIURU (AAA domain-containing protein n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642URS6_DIURU)

HSP 1 Score: 145 bits (367), Expect = 1.320e-40
Identity = 73/110 (66.36%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:    4 IPWSEIYRPILLNDVVGSEHFIERFKVIAERGNMPHMIISGPSGTGKTSTVHALARTLLGHNCNKKTVLELNASDVRGIDVVRTTIKRFAQSRVTLPGGRNKIVILDDAD 333
            +PW E YRP++LNDVVG+E  +ER KVIA  GNMPHMIISG  G GKT++VH LAR LLG   N+ T LELNASD RGIDVVR  IK+FAQ++++LP GR+KI+ILD+AD
Sbjct:   13 LPWVEKYRPMVLNDVVGNEETVERLKVIAHDGNMPHMIISGLPGIGKTTSVHCLARELLGDQYNQAT-LELNASDDRGIDVVRNKIKQFAQTKISLPPGRHKIIILDEAD 121
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BLAST of mRNA_S-ischiensis_contig126.2851.1 vs. uniprot
Match: A0A0G2GHT7_9EURO (Putative replication factor c subunit 4 n=1 Tax=Phaeomoniella chlamydospora TaxID=158046 RepID=A0A0G2GHT7_9EURO)

HSP 1 Score: 144 bits (364), Expect = 5.770e-40
Identity = 74/110 (67.27%), Postives = 86/110 (78.18%), Query Frame = 1 
Query:    4 IPWSEIYRPILLNDVVGSEHFIERFKVIAERGNMPHMIISGPSGTGKTSTVHALARTLLGHNCNKKTVLELNASDVRGIDVVRTTIKRFAQSRVTLPGGRNKIVILDDAD 333
            +PW E YRPI LNDVVG+E  +ER K+IA  GNMPHMIISG  G GKT+++  LAR LLG N  K+ VLELNASD RGIDVVR  IK FAQ +VTLP GR+K+VILD+AD
Sbjct:   24 LPWVEKYRPIFLNDVVGNEETVERLKIIARDGNMPHMIISGMPGIGKTTSILCLARQLLG-NAYKEGVLELNASDERGIDVVRNRIKGFAQKKVTLPSGRHKLVILDEAD 132
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BLAST of mRNA_S-ischiensis_contig126.2851.1 vs. uniprot
Match: A0A4X3NV69_PRIPA (Rfc-2 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A4X3NV69_PRIPA)

HSP 1 Score: 144 bits (362), Expect = 7.200e-40
Identity = 72/110 (65.45%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:    4 IPWSEIYRPILLNDVVGSEHFIERFKVIAERGNMPHMIISGPSGTGKTSTVHALARTLLGHNCNKKTVLELNASDVRGIDVVRTTIKRFAQSRVTLPGGRNKIVILDDAD 333
            IPW E YRP+LLND+VG+EH IER K  A+ GN+P++IISGP G GKT+++ ALAR LLG +  K+  LELNASD RGIDVVR  IK FAQ+RVTLP GR+K++ILD+AD
Sbjct:   10 IPWVEKYRPMLLNDIVGNEHTIERLKHFAKHGNVPNLIISGPPGCGKTTSIWALARELLGKHV-KEACLELNASDDRGIDVVRNKIKTFAQTRVTLPAGRHKMIILDEAD 118
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BLAST of mRNA_S-ischiensis_contig126.2851.1 vs. uniprot
Match: A0A0J9X728_GEOCN (Similar to Saccharomyces cerevisiae YOL094C RFC4 Subunit of heteropentameric Replication factor C (RF-C) n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X728_GEOCN)

HSP 1 Score: 143 bits (360), Expect = 1.670e-39
Identity = 74/110 (67.27%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:    4 IPWSEIYRPILLNDVVGSEHFIERFKVIAERGNMPHMIISGPSGTGKTSTVHALARTLLGHNCNKKTVLELNASDVRGIDVVRTTIKRFAQSRVTLPGGRNKIVILDDAD 333
            +PW E YRP+ L+DVVG+E  +ER KVIA  GNMPH+IISG  G GKT++V  LAR LLG N  K  VLELNASD RGIDVVR TIK+FAQ +V LP GR KIVILD+AD
Sbjct:   19 LPWVEKYRPVRLDDVVGNEETVERLKVIARDGNMPHLIISGAPGIGKTTSVLCLARELLGENY-KSAVLELNASDERGIDVVRGTIKQFAQQKVNLPAGRQKIVILDEAD 127
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BLAST of mRNA_S-ischiensis_contig126.2851.1 vs. uniprot
Match: A0A8J6BBZ3_9EUKA (Replication factor C subunit 2 n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6BBZ3_9EUKA)

HSP 1 Score: 142 bits (359), Expect = 1.930e-39
Identity = 70/110 (63.64%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:    4 IPWSEIYRPILLNDVVGSEHFIERFKVIAERGNMPHMIISGPSGTGKTSTVHALARTLLGHNCNKKTVLELNASDVRGIDVVRTTIKRFAQSRVTLPGGRNKIVILDDAD 333
            +PW E YRP LL DVVG+E  + R  VIA+ G +PHMI+SGP G GKT++VH LA  LLG   +KK VLELNASD RGI+VVRT+IK FAQ +VTLP  R KI+ILD+AD
Sbjct:    8 LPWVEKYRPRLLKDVVGNEEAVSRLSVIAKSGVLPHMILSGPPGVGKTTSVHCLANELLGKELSKKAVLELNASDDRGIEVVRTSIKTFAQKKVTLPPNRQKIIILDEAD 117
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BLAST of mRNA_S-ischiensis_contig126.2851.1 vs. uniprot
Match: A0A1E4RGI7_9ASCO (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Hyphopichia burtonii NRRL Y-1933 TaxID=984485 RepID=A0A1E4RGI7_9ASCO)

HSP 1 Score: 141 bits (356), Expect = 5.780e-39
Identity = 69/110 (62.73%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:    4 IPWSEIYRPILLNDVVGSEHFIERFKVIAERGNMPHMIISGPSGTGKTSTVHALARTLLGHNCNKKTVLELNASDVRGIDVVRTTIKRFAQSRVTLPGGRNKIVILDDAD 333
            +PW E YRP +LND+VG+E  IER K+IAE GNMPHMIISG  G GKT+++H LA  LLG     +  LELNASD RGIDVVR  IK+FAQ+++ LP GR+KI+ILD+AD
Sbjct:   11 LPWVEKYRPHVLNDIVGNEETIERLKLIAEDGNMPHMIISGFPGIGKTTSIHCLAHELLGDKFYSQATLELNASDDRGIDVVRNKIKQFAQTKIQLPPGRHKIIILDEAD 120
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BLAST of mRNA_S-ischiensis_contig126.2851.1 vs. uniprot
Match: R7YIP6_CONA1 (Replication factor C subunit 4 n=1 Tax=Coniosporium apollinis (strain CBS 100218) TaxID=1168221 RepID=R7YIP6_CONA1)

HSP 1 Score: 142 bits (357), Expect = 7.340e-39
Identity = 71/110 (64.55%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:    4 IPWSEIYRPILLNDVVGSEHFIERFKVIAERGNMPHMIISGPSGTGKTSTVHALARTLLGHNCNKKTVLELNASDVRGIDVVRTTIKRFAQSRVTLPGGRNKIVILDDAD 333
            +PW E YRPI+L+D+VG+   IER K+IA+ GNMPH+IISG  G GKT+++  LAR LLG +  K+ VLELNASD RGIDVVR  IK FAQ +VTLP GR+KIVILD+AD
Sbjct:   29 LPWVEKYRPIVLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGPSVYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEAD 138
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BLAST of mRNA_S-ischiensis_contig126.2851.1 vs. uniprot
Match: A0A4D9CMN1_9STRA (AAA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMN1_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.660e-39
Identity = 67/111 (60.36%), Postives = 86/111 (77.48%), Query Frame = 1 
Query:    1 MIPWSEIYRPILLNDVVGSEHFIERFKVIAERGNMPHMIISGPSGTGKTSTVHALARTLLGHNCNKKTVLELNASDVRGIDVVRTTIKRFAQSRVTLPGGRNKIVILDDAD 333
            ++PW E YRP+ LNDVVG+   I+R KV+A+ GNMPHM+++GP GTGKTS++  L+R LLG       VLELNASD RGIDV+R+ IK FAQ +V LP GR+K+VILD+AD
Sbjct:   25 LLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIMCLSRELLGEEHLGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEAD 135
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BLAST of mRNA_S-ischiensis_contig126.2851.1 vs. uniprot
Match: A0A0J0XK17_9TREE (Putative subunit of heteropentameric replication factor C (RF-C) n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XK17_9TREE)

HSP 1 Score: 142 bits (357), Expect = 7.980e-39
Identity = 71/110 (64.55%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:    4 IPWSEIYRPILLNDVVGSEHFIERFKVIAERGNMPHMIISGPSGTGKTSTVHALARTLLGHNCNKKTVLELNASDVRGIDVVRTTIKRFAQSRVTLPGGRNKIVILDDAD 333
            +PW E YRP+LL+D+VG+   +ER KVIAE GNMPH+IISG  G GKT+++H LA  LLG +  ++ VLELNASD RGIDVVR  IK FAQ +VTLP GR+KIVILD+AD
Sbjct:   26 MPWVEKYRPLLLSDIVGNSETVERLKVIAEDGNMPHIIISGMPGIGKTTSIHCLAHALLG-DAYREGVLELNASDERGIDVVRNKIKSFAQRKVTLPAGRHKIVILDEAD 134
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BLAST of mRNA_S-ischiensis_contig126.2851.1 vs. uniprot
Match: A0A0D2BE11_9EURO (Replication factor C subunit 4 n=26 Tax=Chaetothyriales TaxID=34395 RepID=A0A0D2BE11_9EURO)

HSP 1 Score: 141 bits (356), Expect = 9.920e-39
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:    4 IPWSEIYRPILLNDVVGSEHFIERFKVIAERGNMPHMIISGPSGTGKTSTVHALARTLLGHNCNKKTVLELNASDVRGIDVVRTTIKRFAQSRVTLPGGRNKIVILDDAD 333
            +PW E YRP+ L+DVVG+   IER K+IA+ GNMPH+IISG  G GKT++V  LARTLLG N  K+ VLELNASD RGIDVVR  IK FAQ +VTLP GR+K+VILD+AD
Sbjct:   29 LPWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARTLLG-NAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEAD 137
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig126.2851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A642URS6_DIURU1.320e-4066.36AAA domain-containing protein n=1 Tax=Diutina rugo... [more]
A0A0G2GHT7_9EURO5.770e-4067.27Putative replication factor c subunit 4 n=1 Tax=Ph... [more]
A0A4X3NV69_PRIPA7.200e-4065.45Rfc-2 n=2 Tax=Pristionchus pacificus TaxID=54126 R... [more]
A0A0J9X728_GEOCN1.670e-3967.27Similar to Saccharomyces cerevisiae YOL094C RFC4 S... [more]
A0A8J6BBZ3_9EUKA1.930e-3963.64Replication factor C subunit 2 n=1 Tax=Carpediemon... [more]
A0A1E4RGI7_9ASCO5.780e-3962.73p-loop containing nucleoside triphosphate hydrolas... [more]
R7YIP6_CONA17.340e-3964.55Replication factor C subunit 4 n=1 Tax=Coniosporiu... [more]
A0A4D9CMN1_9STRA7.660e-3960.36AAA domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A0J0XK17_9TREE7.980e-3964.55Putative subunit of heteropentameric replication f... [more]
A0A0D2BE11_9EURO9.920e-3966.36Replication factor C subunit 4 n=26 Tax=Chaetothyr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig126contigS-ischiensis_contig126:39725..40057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score142.1
Seed ortholog evalue1.5e-31
Seed eggNOG ortholog61459.XP_007776971.1
Preferred nameRFC4
KEGG koko:K10755
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
GOsGO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022616,GO:0030894,GO:0031389,GO:0031390,GO:0031391,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034644,GO:0034645,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0061860,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0090304,GO:0090618,GO:0097159,GO:0098813,GO:0104004,GO:1901360,GO:1901363,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949
EggNOG free text desc.Replication factor C subunit 4
EggNOG OGs20ANI@147545,38G2T@33154,3MRRU@451870,3NUUJ@4751,3QJGZ@4890,COG0470@1,KOG0991@2759
COG Functional cat.L
Best tax levelChaetothyriomycetidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.1050534-CDS-S-ischiensis_contig126:39724..400571622815670.1050534-CDS-S-ischiensis_contig126:39724..40057Schizocladia ischiensis KU_0333CDSS-ischiensis_contig126 39725..40057 +
1695739841.1150467-CDS-S-ischiensis_contig126:39724..400571695739841.1150467-CDS-S-ischiensis_contig126:39724..40057Schizocladia ischiensis KU_0333CDSS-ischiensis_contig126 39725..40057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig126.2851.1prot_S-ischiensis_contig126.2851.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig126 39725..40057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig126.2851.1

>prot_S-ischiensis_contig126.2851.1 ID=prot_S-ischiensis_contig126.2851.1|Name=mRNA_S-ischiensis_contig126.2851.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=111bp
MIPWSEIYRPILLNDVVGSEHFIERFKVIAERGNMPHMIISGPSGTGKTS
TVHALARTLLGHNCNKKTVLELNASDVRGIDVVRTTIKRFAQSRVTLPGG
RNKIVILDDAD
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mRNA from alignment at S-ischiensis_contig126:39725..40057+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig126.2851.1 ID=mRNA_S-ischiensis_contig126.2851.1|Name=mRNA_S-ischiensis_contig126.2851.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=333bp|location=Sequence derived from alignment at S-ischiensis_contig126:39725..40057+ (Schizocladia ischiensis KU_0333)
ATGATTCCGTGGTCTGAGATATACCGGCCTATTTTACTGAATGATGTCGT
CGGTAGTGAGCATTTCATCGAACGCTTCAAGGTTATTGCCGAACGAGGGA
ACATGCCTCACATGATCATCTCCGGTCCTTCTGGCACAGGAAAGACCTCA
ACGGTTCATGCTCTCGCGAGAACCCTCTTAGGACATAATTGTAATAAGAA
AACTGTTCTCGAATTGAATGCTTCGGATGTAAGGGGCATCGATGTTGTGA
GAACCACGATAAAGCGATTTGCTCAATCTCGTGTTACTCTCCCCGGAGGC
AGAAATAAGATCGTCATCCTCGATGACGCCGAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig126:39725..40057+

>mRNA_S-ischiensis_contig126.2851.1 ID=mRNA_S-ischiensis_contig126.2851.1|Name=mRNA_S-ischiensis_contig126.2851.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=666bp|location=Sequence derived from alignment at S-ischiensis_contig126:39725..40057+ (Schizocladia ischiensis KU_0333)
ATGATTCCGTGGTCTGAGATATACCGGCCTATTTTACTGAATGATGTCGT
CGGTAGTGAGCATTTCATCGAACGCTTCAAGGTTATTGCCGAACGAGGGA
ACATGCCTCACATGATCATCTCCGGTCCTTCTGGCACAGGAAAGACCTCA
ACGGTTCATGCTCTCGCGAGAACCCTCTTAGGACATAATTGTAATAAGAA
AACTGTTCTCGAATTGAATGCTTCGGATGTAAGGGGCATCGATGTTGTGA
GAACCACGATAAAGCGATTTGCTCAATCTCGTGTTACTCTCCCCGGAGGC
AGAAATAAGATCGTCATCCTCGATGACGCCGATATGATTCCGTGGTCTGA
GATATACCGGCCTATTTTACTGAATGATGTCGTCGGTAGTGAGCATTTCA
TCGAACGCTTCAAGGTTATTGCCGAACGAGGGAACATGCCTCACATGATC
ATCTCCGGTCCTTCTGGCACAGGAAAGACCTCAACGGTTCATGCTCTCGC
GAGAACCCTCTTAGGACATAATTGTAATAAGAAAACTGTTCTCGAATTGA
ATGCTTCGGATGTAAGGGGCATCGATGTTGTGAGAACCACGATAAAGCGA
TTTGCTCAATCTCGTGTTACTCTCCCCGGAGGCAGAAATAAGATCGTCAT
CCTCGATGACGCCGAT
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