mRNA_S-ischiensis_contig122.2821.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig122.2821.1
Unique NamemRNA_S-ischiensis_contig122.2821.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig122.2821.1 vs. uniprot
Match: A0A7S6UA27_9STRA (TatC n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA27_9STRA)

HSP 1 Score: 208 bits (530), Expect = 9.500e-65
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = -1 
Query:  269 DSTNFSAVSLNFEPRLEDFIEGIGQFLKVLSLSFPCLLILLYIQQKTKIYFWIRHRSLIYLLAFSLAALLTPPDVYSQLLLGLVFIILFEIHLSLWSVYLAYGKKSRW 592
            DSTNFSAVSLNFEPRLEDFIEGIGQFLKVLSLSFPCLLILLYIQQKTKIYFWIRHRSLIYLLAFSLAALLTPPDVYSQLLLGLVFIILFEIHLSLWSVYLAYGKKSRW
Sbjct:  135 DSTNFSAVSLNFEPRLEDFIEGIGQFLKVLSLSFPCLLILLYIQQKTKIYFWIRHRSLIYLLAFSLAALLTPPDVYSQLLLGLVFIILFEIHLSLWSVYLAYGKKSRW 242
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BLAST of mRNA_S-ischiensis_contig122.2821.1 vs. uniprot
Match: A0A7S6ZPD7_9STRA (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPD7_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.180e-53
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2 
Query:    2 ANMLLMSALTSILFLGGWLPVLDILSWIPSSLWLGGKICIFVILFIWMRAALPRYRYDQLMTLGWKSFLPLSIAWLLLTLGVLVSFNWLPS 274
            ANMLLMSALTSILFLGGWLPVLDILSWIPSSLWLGGKICIFVILFIWMRAALPRYRYDQLMTLGWKSFLPLSIAWLLLTLGVLVSFNWLPS
Sbjct:  233 ANMLLMSALTSILFLGGWLPVLDILSWIPSSLWLGGKICIFVILFIWMRAALPRYRYDQLMTLGWKSFLPLSIAWLLLTLGVLVSFNWLPS 323
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BLAST of mRNA_S-ischiensis_contig122.2821.1 vs. uniprot
Match: A0A1C9TCZ5_HETAK (NADH-ubiquinone oxidoreductase chain 1 n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A1C9TCZ5_HETAK)

HSP 1 Score: 139 bits (350), Expect = 1.100e-36
Identity = 68/93 (73.12%), Postives = 79/93 (84.95%), Query Frame = 2 
Query:    2 ANMLLMSALTSILFLGGWLPVLDI--LSWIPSSLWLGGKICIFVILFIWMRAALPRYRYDQLMTLGWKSFLPLSIAWLLLTLGVLVSFNWLPS 274
            ANMLLMS+LT+ILFLGGWLP+ DI   +WIPS +W G K+CIFV+LFIW RA LPRYRYDQLMTLGWK FLPLS+ +LL T  +LVSFNWLP+
Sbjct:  237 ANMLLMSSLTTILFLGGWLPLFDIAPFNWIPSPVWFGLKLCIFVVLFIWFRATLPRYRYDQLMTLGWKVFLPLSLGYLLFTASMLVSFNWLPN 329
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BLAST of mRNA_S-ischiensis_contig122.2821.1 vs. uniprot
Match: D2Z214_9STRA (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Chattonella marina TaxID=90936 RepID=D2Z214_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.810e-34
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 2 
Query:    2 ANMLLMSALTSILFLGGWLPVLDI--LSWIPSSLWLGGKICIFVILFIWMRAALPRYRYDQLMTLGWKSFLPLSIAWLLLTLGVLVSFNWLPS 274
            ANMLLMS+L +ILFLGGWL ++D+   +W PSS+W G K+C FVILFIW RA LPRYRYDQLMTLGWK FLPLS+ +L++T  VL+SFNWLP+
Sbjct:  237 ANMLLMSSLITILFLGGWLSLIDLPPFNWAPSSIWFGLKVCFFVILFIWFRAILPRYRYDQLMTLGWKVFLPLSLGYLIVTASVLISFNWLPN 329
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BLAST of mRNA_S-ischiensis_contig122.2821.1 vs. uniprot
Match: A0A649UDF9_AURAN (NADH-ubiquinone oxidoreductase chain 1 n=2 Tax=Pelagomonadales TaxID=54409 RepID=A0A649UDF9_AURAN)

HSP 1 Score: 128 bits (321), Expect = 2.100e-32
Identity = 63/92 (68.48%), Postives = 75/92 (81.52%), Query Frame = 2 
Query:    2 ANMLLMSALTSILFLGGWLPVLDI--LSWIPSSLWLGGKICIFVILFIWMRAALPRYRYDQLMTLGWKSFLPLSIAWLLLTLGVLVSFNWLP 271
            ANML+MS +T+ILFLGGWLP+ DI  L+ IP  +W   K+ IFVI FIW RAALPRYRYDQLM+LGWK+FLPLS+ WLL T+  L+SFNWLP
Sbjct:  237 ANMLIMSGMTTILFLGGWLPLFDIMPLNLIPGPVWFSIKLSIFVIAFIWARAALPRYRYDQLMSLGWKAFLPLSLGWLLFTVACLISFNWLP 328
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BLAST of mRNA_S-ischiensis_contig122.2821.1 vs. uniprot
Match: NUOH_RHOCS (NADH-quinone oxidoreductase subunit H n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) TaxID=414684 RepID=NUOH_RHOCS)

HSP 1 Score: 127 bits (320), Expect = 3.390e-32
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = 2 
Query:    2 ANMLLMSALTSILFLGGWLPVLDI--LSWIPSSLWLGGKICIFVILFIWMRAALPRYRYDQLMTLGWKSFLPLSIAWLLLTLGVLVSFNWLP 271
            ANM+LMSA+TS+LFLGGWLP LD+  L+W+P  +W   KIC  + LF+W+RA +PRYRYDQLM LGWK FLP S+ W++LT GVLV+F+WLP
Sbjct:  244 ANMILMSAMTSVLFLGGWLPPLDVAPLNWVPGPIWFILKICFCLFLFVWVRATVPRYRYDQLMRLGWKVFLPFSLVWVILTAGVLVTFDWLP 335
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BLAST of mRNA_S-ischiensis_contig122.2821.1 vs. uniprot
Match: K9ZXU4_9STRA (NADH-ubiquinone oxidoreductase chain 1 n=11 Tax=Monodopsidaceae TaxID=425072 RepID=K9ZXU4_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.890e-32
Identity = 66/93 (70.97%), Postives = 78/93 (83.87%), Query Frame = 2 
Query:    2 ANMLLMSALTSILFLGGWLPVLDILSW--IPSSLWLGGKICIFVILFIWMRAALPRYRYDQLMTLGWKSFLPLSIAWLLLTLGVLVSFNWLPS 274
            ANMLLMSALT+ILFLGGWLP+LDI  +  IP+S+W G KI  FV+LFI MRA LPR+RYDQLM+LGWK FLP S+ WL+LT  VL+SFNWLP+
Sbjct:  234 ANMLLMSALTAILFLGGWLPLLDIFPFTIIPNSVWFGLKIGGFVVLFIVMRACLPRFRYDQLMSLGWKVFLPFSLGWLILTASVLMSFNWLPN 326
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BLAST of mRNA_S-ischiensis_contig122.2821.1 vs. uniprot
Match: Q2TUC9_DICDH (NADH-ubiquinone oxidoreductase chain 1 n=2 Tax=Dictyota TaxID=2875 RepID=Q2TUC9_DICDH)

HSP 1 Score: 127 bits (318), Expect = 5.040e-32
Identity = 65/91 (71.43%), Postives = 75/91 (82.42%), Query Frame = 2 
Query:    2 ANMLLMSALTSILFLGGWLPVLDILSWIPSSLWLGGKICIFVILFIWMRAALPRYRYDQLMTLGWKSFLPLSIAWLLLTLGVLVSFNWLPS 274
            ANML MSALTS +FLGGWL +   L +IP S+WLG KIC FVILFIW RA LPRYRYDQLM LGWK FLPLS+++L L +GVLVSF+WLP+
Sbjct:  233 ANMLFMSALTSTVFLGGWLSI-PYLGFIPGSVWLGIKICFFVILFIWARAILPRYRYDQLMDLGWKCFLPLSLSFLFLIVGVLVSFDWLPN 322
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BLAST of mRNA_S-ischiensis_contig122.2821.1 vs. uniprot
Match: A0A839SSL2_9HYPH (NADH-quinone oxidoreductase subunit H n=1 Tax=Limibacillus halophilus TaxID=1579333 RepID=A0A839SSL2_9HYPH)

HSP 1 Score: 127 bits (318), Expect = 6.660e-32
Identity = 58/93 (62.37%), Postives = 75/93 (80.65%), Query Frame = 2 
Query:    2 ANMLLMSALTSILFLGGWLPVLDI--LSWIPSSLWLGGKICIFVILFIWMRAALPRYRYDQLMTLGWKSFLPLSIAWLLLTLGVLVSFNWLPS 274
            ANM+LMSA+ SILFLGGWLP++DI   +WIP  +W  GKI + +  F+W+RA  PRYRYDQLM LGWK FLPLS+ W++LT GVLV+F+W+P+
Sbjct:  244 ANMILMSAMVSILFLGGWLPIMDIAPFNWIPGPIWFAGKIALVLFCFLWVRATFPRYRYDQLMRLGWKVFLPLSLIWVVLTAGVLVAFDWVPA 336
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BLAST of mRNA_S-ischiensis_contig122.2821.1 vs. uniprot
Match: A0A140F2T1_9STRA (NADH-ubiquinone oxidoreductase chain 1 n=3 Tax=Eustigmataceae TaxID=425071 RepID=A0A140F2T1_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.080e-31
Identity = 63/93 (67.74%), Postives = 73/93 (78.49%), Query Frame = 2 
Query:    2 ANMLLMSALTSILFLGGWLPVLDILSW--IPSSLWLGGKICIFVILFIWMRAALPRYRYDQLMTLGWKSFLPLSIAWLLLTLGVLVSFNWLPS 274
            ANMLLMSALT+ILFLGGWLP+L+   +  IP  LW G KIC FVILF+ MRA LPR RYDQLM LGWK FLP S+ WL+ T  +L+SFNWLP+
Sbjct:  234 ANMLLMSALTTILFLGGWLPILNCFPFNCIPGPLWFGLKICFFVILFVVMRACLPRLRYDQLMNLGWKIFLPFSLGWLIFTASILISFNWLPN 326
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig122.2821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6UA27_9STRA9.500e-65100.00TatC n=1 Tax=Schizocladia ischiensis TaxID=196139 ... [more]
A0A7S6ZPD7_9STRA5.180e-53100.00NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Sch... [more]
A0A1C9TCZ5_HETAK1.100e-3673.12NADH-ubiquinone oxidoreductase chain 1 n=4 Tax=Het... [more]
D2Z214_9STRA1.810e-3468.82NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Cha... [more]
A0A649UDF9_AURAN2.100e-3268.48NADH-ubiquinone oxidoreductase chain 1 n=2 Tax=Pel... [more]
NUOH_RHOCS3.390e-3264.13NADH-quinone oxidoreductase subunit H n=1 Tax=Rhod... [more]
K9ZXU4_9STRA3.890e-3270.97NADH-ubiquinone oxidoreductase chain 1 n=11 Tax=Mo... [more]
Q2TUC9_DICDH5.040e-3271.43NADH-ubiquinone oxidoreductase chain 1 n=2 Tax=Dic... [more]
A0A839SSL2_9HYPH6.660e-3262.37NADH-quinone oxidoreductase subunit H n=1 Tax=Limi... [more]
A0A140F2T1_9STRA1.080e-3167.74NADH-ubiquinone oxidoreductase chain 1 n=3 Tax=Eus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig122contigS-ischiensis_contig122:31082..31673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score125.6
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog414684.RC1_1233
Preferred namenuoH
KEGG rclassRC00061
KEGG koko:K00337
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
GOsGO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
EggNOG OGs1MU2R@1224,2JPWU@204441,2TS09@28211,COG1005@1,COG1005@2
EC1.6.5.3
COG Functional cat.C
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal anchor
Exons1
Model size592
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig122.2821.1prot_S-ischiensis_contig122.2821.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig122 31089..31358 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.789294-UTR-S-ischiensis_contig122:31081..310881622815667.789294-UTR-S-ischiensis_contig122:31081..31088Schizocladia ischiensis KU_0333UTRS-ischiensis_contig122 31082..31088 +
1695739839.637957-UTR-S-ischiensis_contig122:31081..310881695739839.637957-UTR-S-ischiensis_contig122:31081..31088Schizocladia ischiensis KU_0333UTRS-ischiensis_contig122 31082..31088 +
1622815667.821665-UTR-S-ischiensis_contig122:31358..316731622815667.821665-UTR-S-ischiensis_contig122:31358..31673Schizocladia ischiensis KU_0333UTRS-ischiensis_contig122 31359..31673 +
1695739839.6606455-UTR-S-ischiensis_contig122:31358..316731695739839.6606455-UTR-S-ischiensis_contig122:31358..31673Schizocladia ischiensis KU_0333UTRS-ischiensis_contig122 31359..31673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.8047643-CDS-S-ischiensis_contig122:31088..313581622815667.8047643-CDS-S-ischiensis_contig122:31088..31358Schizocladia ischiensis KU_0333CDSS-ischiensis_contig122 31089..31358 +
1695739839.6503985-CDS-S-ischiensis_contig122:31088..313581695739839.6503985-CDS-S-ischiensis_contig122:31088..31358Schizocladia ischiensis KU_0333CDSS-ischiensis_contig122 31089..31358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig122.2821.1

>prot_S-ischiensis_contig122.2821.1 ID=prot_S-ischiensis_contig122.2821.1|Name=mRNA_S-ischiensis_contig122.2821.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=90bp
MLLMSALTSILFLGGWLPVLDILSWIPSSLWLGGKICIFVILFIWMRAAL
PRYRYDQLMTLGWKSFLPLSIAWLLLTLGVLVSFNWLPS*
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mRNA from alignment at S-ischiensis_contig122:31082..31673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig122.2821.1 ID=mRNA_S-ischiensis_contig122.2821.1|Name=mRNA_S-ischiensis_contig122.2821.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=592bp|location=Sequence derived from alignment at S-ischiensis_contig122:31082..31673+ (Schizocladia ischiensis KU_0333)
TGCTAATATGCTTCTTATGAGTGCATTGACATCTATTCTTTTTTTAGGGG
GGTGGCTTCCTGTGTTGGATATTTTAAGTTGGATACCTTCTTCTCTTTGG
TTGGGGGGTAAGATTTGTATTTTTGTTATTCTCTTTATTTGGATGCGAGC
GGCTCTCCCCCGATATCGTTATGATCAGCTTATGACTTTAGGTTGGAAGT
CTTTTTTACCCTTGTCTATAGCTTGGCTACTTCTGACCCTGGGGGTTCTT
GTGAGCTTTAACTGGCTACCATCTTGATTTCTTACCGTAAGCCAAGTATA
CAGACCAAAGGCTTAAATGAATCTCAAAAAGAATAATGAATACTAAGCCC
AAGAGAAGTTGACTGTATACATCGGGAGGTGTCAAAAGAGCTGCTAGACT
AAAGGCTAAAAGGTAAATGAGACTTCTATGTCTTATCCAAAAATAGATTT
TAGTCTTTTGTTGAATATATAGAAGAATTAAAAGACAAGGAAAGCTTAAA
CTTAAGACTTTTAGGAATTGGCCAATTCCTTCTATAAAATCTTCTAAACG
GGGCTCGAAATTTAAAGATACCGCAGAAAAGTTTGTGGAATC
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Coding sequence (CDS) from alignment at S-ischiensis_contig122:31082..31673+

>mRNA_S-ischiensis_contig122.2821.1 ID=mRNA_S-ischiensis_contig122.2821.1|Name=mRNA_S-ischiensis_contig122.2821.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig122:31082..31673+ (Schizocladia ischiensis KU_0333)
ATGCTTCTTATGAGTGCATTGACATCTATTCTTTTTTTAGGGGGGTGGCT
TCCTGTGTTGGATATTTTAAGTTGGATACCTTCTTCTCTTTGGTTGGGGG
GTAAGATTTGTATTTTTGTTATTCTCTTTATTTGGATGCGAGCGGCTCTC
CCCCGATATCGTTATGATCAGCTTATGACTTTAGGTTGGAAGTCTTTTTT
ACCCTTGTCTATAGCTTGGCTACTTCTGACCCTGGGGGTTCTTGTGAGCT
TTAACTGGCTACCATCTTGAATGCTTCTTATGAGTGCATTGACATCTATT
CTTTTTTTAGGGGGGTGGCTTCCTGTGTTGGATATTTTAAGTTGGATACC
TTCTTCTCTTTGGTTGGGGGGTAAGATTTGTATTTTTGTTATTCTCTTTA
TTTGGATGCGAGCGGCTCTCCCCCGATATCGTTATGATCAGCTTATGACT
TTAGGTTGGAAGTCTTTTTTACCCTTGTCTATAGCTTGGCTACTTCTGAC
CCTGGGGGTTCTTGTGAGCTTTAACTGGCTACCATCTTGA
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