mRNA_S-ischiensis_contig122.2806.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig122.2806.1
Unique NamemRNA_S-ischiensis_contig122.2806.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig122.2806.1 vs. uniprot
Match: A0A7S6UA41_9STRA (Nad2 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA41_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.520e-60
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:    1 MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPTWEILLLLCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEGNQ 294
            MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPTWEILLLLCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEGNQ
Sbjct:  237 MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPTWEILLLLCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEGNQ 334
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BLAST of mRNA_S-ischiensis_contig122.2806.1 vs. uniprot
Match: Q2TUE9_9PHAE (NADH dehydrogenase subunit 2 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUE9_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.360e-30
Identity = 55/99 (55.56%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPT-WEILLLLCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEGNQ 294
            MW+ DVYEG+PT  S +FAVVPK S+ VV+SR  +T+FWSF P+ WE    +CG +SL IGC+ GL +TK+KRLLA+S + HVGF+C  +++G +EG Q
Sbjct:  237 MWIADVYEGSPTLVSFIFAVVPKFSIFVVISRLIFTSFWSFFPSLWEDFFCICGLLSLSIGCLCGLGETKIKRLLAFSSVGHVGFLCLGLASGSIEGLQ 335
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BLAST of mRNA_S-ischiensis_contig122.2806.1 vs. uniprot
Match: A0A1I9LW35_9PHAE (NADH dehydrogenase subunit 2 n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW35_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.320e-29
Identity = 55/97 (56.70%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPT-WEILLLLCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEG 288
            MW+ DVYEGAPT  S +FAVVPK++  VV+ R  +T+FWSF P  WE    +CG +SL+IGC+ GL +TKLKRLLA+S I HVGF+C  +++G +EG
Sbjct:  237 MWIADVYEGAPTLVSLIFAVVPKVAFFVVILRLAFTSFWSFFPLFWENFFCVCGLLSLFIGCICGLGETKLKRLLAFSSIGHVGFLCLGLASGSMEG 333
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BLAST of mRNA_S-ischiensis_contig122.2806.1 vs. uniprot
Match: A0A3G5FPS0_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPS0_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.830e-29
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPT-WEILLLLCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEGNQ 294
            MW+ DVYEGAPT  S +FAVVPK++  VV+ R  +T+FWS  P  WE    LCG +SL+IGC+ GL +TK+KRLLA+S I HVGF+C  +++G LEG Q
Sbjct:  237 MWIADVYEGAPTFVSLIFAVVPKVAFFVVVLRLAFTSFWSLFPMFWEDFFCLCGLLSLFIGCICGLGETKIKRLLAFSSIGHVGFLCLGLASGSLEGLQ 335
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BLAST of mRNA_S-ischiensis_contig122.2806.1 vs. uniprot
Match: A0A8F0K0T6_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K0T6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.870e-29
Identity = 56/99 (56.57%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPT-WEILLLLCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEGNQ 294
            MW+ DVYEGAPT  S +FAVVPK ++ VV+ R  +T+FWSF P  WE    +CG +SL+IGC  GL +TK+KRLLA+S + HVGF+C  +S G LEG Q
Sbjct:  237 MWIADVYEGAPTIVSFIFAVVPKFAVFVVILRLSFTSFWSFFPIFWEDFFCVCGLLSLFIGCFCGLGETKIKRLLAFSSVGHVGFLCLGLSCGNLEGVQ 335
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BLAST of mRNA_S-ischiensis_contig122.2806.1 vs. uniprot
Match: Q2TUJ1_FUCVE (NADH dehydrogenase subunit 2 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUJ1_FUCVE)

HSP 1 Score: 118 bits (295), Expect = 3.560e-29
Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPT-WEILLLLCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEGNQ 294
            MW+ DVYEG+PT  S +FAVVPK+++ +V+ R  + +FWSF P  WE    LCG +SL+IGC+ GL +TK+KRLLA+S + HVGF+C  +++G +EG Q
Sbjct:  237 MWIADVYEGSPTIVSLIFAVVPKIAVFIVILRLSFLSFWSFFPVFWEDFFCLCGLLSLFIGCLCGLGETKIKRLLAFSSVGHVGFLCIGLASGSIEGVQ 335
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BLAST of mRNA_S-ischiensis_contig122.2806.1 vs. uniprot
Match: A0A8F0FCX9_9PHAE (NADH dehydrogenase subunit 2 n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCX9_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 3.560e-29
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPT-WEILLLLCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEGNQ 294
            MW+ DVYEGAP   S +FAVVPK +  VV+ R  +T+FWSF PT WE    +CG +SL IGC+ GL +TK+KRLLA+S I HVGF+C  +++G +EG Q
Sbjct:  237 MWIADVYEGAPALVSFLFAVVPKFAFFVVILRIVFTSFWSFFPTLWEDFFCICGLLSLLIGCLCGLGETKIKRLLAFSSIGHVGFLCLGLASGSIEGVQ 335
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BLAST of mRNA_S-ischiensis_contig122.2806.1 vs. uniprot
Match: E6ZES5_ECTSI (NADH dehydrogenase subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZES5_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 4.860e-29
Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPT-WEILLLLCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEGNQ 294
            MW+ DVYEGAPT  S +FA+VPK++  VV+ R  +T+FWS  PT WE    +CG +SL+IGC+ GL +TK+KR+LA+S + HVGF+C  +++G +EG Q
Sbjct:  237 MWIADVYEGAPTLVSLIFALVPKVAFFVVVLRIAFTSFWSLFPTLWEDFFCICGLLSLFIGCLCGLGETKIKRILAFSSVGHVGFLCLGLASGSIEGIQ 335
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BLAST of mRNA_S-ischiensis_contig122.2806.1 vs. uniprot
Match: Q94Z01_PYLLI (NADH dehydrogenase subunit 2 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z01_PYLLI)

HSP 1 Score: 117 bits (292), Expect = 9.310e-29
Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    1 MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPT-WEILLLLCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEGNQ 294
            MW+ DVYEGAPT  S +FAVVPK +L VV+ R  Y +FWSF P+ WE     CG  SL+IGC+  L +TK+KRLLA+S + HVGF+C  + +G LEG Q
Sbjct:  237 MWIADVYEGAPTQVSLIFAVVPKAALFVVVLRLSYMSFWSFFPSFWESFFCFCGLFSLFIGCLCSLGETKIKRLLAFSSVGHVGFLCLGVVSGSLEGVQ 335
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BLAST of mRNA_S-ischiensis_contig122.2806.1 vs. uniprot
Match: F8UWM7_9PHAE (NADH dehydrogenase subunit 2 n=61 Tax=Laminariales TaxID=2886 RepID=F8UWM7_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 9.460e-29
Identity = 52/99 (52.53%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPT-WEILLLLCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEGNQ 294
            MW+ DVYEGAPT    +FAV+PK +  VV+ R  +T+FWSF P+ WE    +CG +SL+IGC+ GL +TK+KRLLA+S + HVGF+C  +++G +EG Q
Sbjct:  237 MWIADVYEGAPTLVGFIFAVIPKFAFFVVILRLSFTSFWSFFPSLWENFFCICGLLSLFIGCICGLGETKIKRLLAFSSVGHVGFLCLGLASGNIEGIQ 335
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig122.2806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6UA41_9STRA1.520e-60100.00Nad2 n=1 Tax=Schizocladia ischiensis TaxID=196139 ... [more]
Q2TUE9_9PHAE1.360e-3055.56NADH dehydrogenase subunit 2 n=2 Tax=Desmarestia T... [more]
A0A1I9LW35_9PHAE1.320e-2956.70NADH dehydrogenase subunit 2 n=2 Tax=Pleurocladia ... [more]
A0A3G5FPS0_9PHAE1.830e-2956.57NADH dehydrogenase subunit 2 n=1 Tax=Cladosiphon o... [more]
A0A8F0K0T6_9PHAE1.870e-2956.57NADH dehydrogenase subunit 2 n=1 Tax=Analipus japo... [more]
Q2TUJ1_FUCVE3.560e-2952.53NADH dehydrogenase subunit 2 n=3 Tax=Fucus TaxID=3... [more]
A0A8F0FCX9_9PHAE3.560e-2955.56NADH dehydrogenase subunit 2 n=3 Tax=Laminariales ... [more]
E6ZES5_ECTSI4.860e-2952.53NADH dehydrogenase subunit 2 n=1 Tax=Ectocarpus si... [more]
Q94Z01_PYLLI9.310e-2955.56NADH dehydrogenase subunit 2 n=1 Tax=Pylaiella lit... [more]
F8UWM7_9PHAE9.460e-2952.53NADH dehydrogenase subunit 2 n=61 Tax=Laminariales... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig122contigS-ischiensis_contig122:1847..2140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score95.5
Seed ortholog evalue1.5e-17
Seed eggNOG ortholog70448.Q0P3F7
KEGG rclassRC00061
KEGG koko:K03879
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142
EggNOG free text desc.Proton-conducting membrane transporter
EggNOG OGs34N0D@3041,38434@33090,COG1007@1,KOG4668@2759
EC1.6.5.3
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size295
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.171233-CDS-S-ischiensis_contig122:1846..21401622815667.171233-CDS-S-ischiensis_contig122:1846..2140Schizocladia ischiensis KU_0333CDSS-ischiensis_contig122 1847..2140 +
1695739839.3388155-CDS-S-ischiensis_contig122:1846..21401695739839.3388155-CDS-S-ischiensis_contig122:1846..2140Schizocladia ischiensis KU_0333CDSS-ischiensis_contig122 1847..2140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig122.2806.1prot_S-ischiensis_contig122.2806.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig122 1847..2140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig122.2806.1

>prot_S-ischiensis_contig122.2806.1 ID=prot_S-ischiensis_contig122.2806.1|Name=mRNA_S-ischiensis_contig122.2806.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=98bp
MWVPDVYEGAPTSFSQVFAVVPKLSLLVVLSRFFYTAFWSFSPTWEILLL
LCGAMSLYIGCMGGLAQTKLKRLLAYSGISHVGFMCAAMSTGCLEGNQ
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mRNA from alignment at S-ischiensis_contig122:1847..2140+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig122.2806.1 ID=mRNA_S-ischiensis_contig122.2806.1|Name=mRNA_S-ischiensis_contig122.2806.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=294bp|location=Sequence derived from alignment at S-ischiensis_contig122:1847..2140+ (Schizocladia ischiensis KU_0333)
ATGTGGGTGCCTGATGTTTATGAAGGTGCTCCTACAAGTTTCAGTCAAGT
CTTTGCAGTTGTGCCTAAATTAAGTCTTCTAGTTGTTCTTAGTAGATTTT
TCTACACAGCTTTCTGGTCTTTTTCCCCTACCTGGGAGATATTACTTCTC
CTTTGCGGGGCCATGAGTTTGTATATAGGCTGTATGGGAGGTTTAGCCCA
AACCAAATTGAAGCGTCTTTTAGCTTATAGCGGTATTTCCCATGTGGGCT
TTATGTGTGCAGCCATGTCTACAGGATGTTTAGAAGGAAATCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig122:1847..2140+

>mRNA_S-ischiensis_contig122.2806.1 ID=mRNA_S-ischiensis_contig122.2806.1|Name=mRNA_S-ischiensis_contig122.2806.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=588bp|location=Sequence derived from alignment at S-ischiensis_contig122:1847..2140+ (Schizocladia ischiensis KU_0333)
ATGTGGGTGCCTGATGTTTATGAAGGTGCTCCTACAAGTTTCAGTCAAGT
CTTTGCAGTTGTGCCTAAATTAAGTCTTCTAGTTGTTCTTAGTAGATTTT
TCTACACAGCTTTCTGGTCTTTTTCCCCTACCTGGGAGATATTACTTCTC
CTTTGCGGGGCCATGAGTTTGTATATAGGCTGTATGGGAGGTTTAGCCCA
AACCAAATTGAAGCGTCTTTTAGCTTATAGCGGTATTTCCCATGTGGGCT
TTATGTGTGCAGCCATGTCTACAGGATGTTTAGAAGGAAATCAGATGTGG
GTGCCTGATGTTTATGAAGGTGCTCCTACAAGTTTCAGTCAAGTCTTTGC
AGTTGTGCCTAAATTAAGTCTTCTAGTTGTTCTTAGTAGATTTTTCTACA
CAGCTTTCTGGTCTTTTTCCCCTACCTGGGAGATATTACTTCTCCTTTGC
GGGGCCATGAGTTTGTATATAGGCTGTATGGGAGGTTTAGCCCAAACCAA
ATTGAAGCGTCTTTTAGCTTATAGCGGTATTTCCCATGTGGGCTTTATGT
GTGCAGCCATGTCTACAGGATGTTTAGAAGGAAATCAG
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