mRNA_S-ischiensis_contig121.2800.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig121.2800.1
Unique NamemRNA_S-ischiensis_contig121.2800.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig121.2800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig121contigS-ischiensis_contig121:27294..29817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size577
Cds size576
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.3063781-CDS-S-ischiensis_contig121:27293..276931622815666.3063781-CDS-S-ischiensis_contig121:27293..27693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig121 27294..27693 +
1695739838.8159673-CDS-S-ischiensis_contig121:27293..276931695739838.8159673-CDS-S-ischiensis_contig121:27293..27693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig121 27294..27693 +
1622815666.3175673-CDS-S-ischiensis_contig121:29640..298161622815666.3175673-CDS-S-ischiensis_contig121:29640..29816Schizocladia ischiensis KU_0333CDSS-ischiensis_contig121 29641..29816 +
1695739838.8261213-CDS-S-ischiensis_contig121:29640..298161695739838.8261213-CDS-S-ischiensis_contig121:29640..29816Schizocladia ischiensis KU_0333CDSS-ischiensis_contig121 29641..29816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig121.2800.1prot_S-ischiensis_contig121.2800.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig121 27294..29816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig121.2800.1

>prot_S-ischiensis_contig121.2800.1 ID=prot_S-ischiensis_contig121.2800.1|Name=mRNA_S-ischiensis_contig121.2800.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=192bp
HHAGHCQDFNFLGWLIHLVWGGTVKKQLLELRALSHVCVVFPLPALVAVV
LVLDDGECCVVALPLDTGGDVDNVIPEGLPPASREVLPDQGVHRLDVVDP
CVAQVVLRGAAEEFLHPGVPLTACVVSSAARESSSWRSNSCSHSCHPSTP
RGPLHTRISSSSGLWAIAAVSRSQNTPRTAVARWTPRPGRAT
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mRNA from alignment at S-ischiensis_contig121:27294..29817+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig121.2800.1 ID=mRNA_S-ischiensis_contig121.2800.1|Name=mRNA_S-ischiensis_contig121.2800.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2524bp|location=Sequence derived from alignment at S-ischiensis_contig121:27294..29817+ (Schizocladia ischiensis KU_0333)
CACCACGCCGGCCACTGTCAGGACTTCAATTTCCTGGGGTGGCTCATCCA
TCTCGTCTGGGGCGGCACTGTCAAGAAGCAGCTCCTTGAGCTTCGTGCGC
TCAGCCACGTTTGTGTTGTGTTCCCGCTCCCGGCTCTTGTAGCTGTCGTT
CTTGTGCTTGATGATGGCGAGTGTTGTGTTGTGGCCCTTCCCCTCGACAC
TGGTGGTGATGTAGACAATGTCATTCCCGAGGGTCTCCCCCCTGCTTCTC
GGGAAGTGCTTCCTGACCAAGGTGTTCACCGTCTTGATGTTGTTGATCCC
TGTGTAGCGCAGGTGGTGCTGCGTGGCGCTGCGGAGGAATTTCTCCACCC
TGGGGTGCCCTTGACAGCGTGTGTCGTGTCCAGTGCCGCGAGAGAGTCGT
GTGTTTGTTGTACACGGCAGGTGTACACACCACGGTGGGTGGCGGGAGAG
GGGCGGTTGGGGGGGGGGCAGGGAGTGGCGGTGGGAAAGGCGAGGGACGG
GAAAGAGGTGGGGAGGGGAAGAGGGAGATAGAGGAGAGAGGGGGGGCGAC
AGCGAGTGGGAAGGGTGGGCCGGGTGAGATGGAGAGGAAGAGGGGGGCTA
TGGAGGGGGAGGGGGAGGGAGAGGGAGAGAGAGAGAAAGCGAGAAGAGGA
AAGGGAGGGAGCGAGGGAGGGAGCGAACAACCTCCTCGTCTTCAGAAGGA
CACGACACAGTACCGTGCGGCACGCAAGTGTCCATACAAACATTCTCCCC
AAGTGGCTTGTGATTGGCCTTTGCTGAGTGTCGATCGGGTCACAGAACCC
CTTCGTCGAGGCCAAAGCATTCCTAACACCCTGATGAGCATGACGAGAAA
AAATAGACGGGTCGCGGGATCAAGGTCTCGCAAGTCTTTAGAGTTTTCCC
GGCTGCGGTCCCTAGGTGGGACAAGGTCTGCACCTCTCTGCTTCCCTCAA
ATAATCTTTGAGGTACAAATCGCTCCGAACTTTGGATAAGTTGGCGCATG
ACCAATGCGCCCTGGACAACCTACCTACGTAGGTACAATGGTAGGGTGTA
CGCGACACACGCACATTACTGCTTGGCACAGTCATCGAAACGAGACTGTA
CTGTAACAACATATGGTGCCAGTAAAATCACAACGCACATGCCAGTCATG
GAATCGACTTAGTAGAGCACAGCCCAAACTACTCTAGGTACTTCGAGCGG
CCCTCTTTACCCACGCCTTTTCACTCTTTTCTGACCCCTCCGACGCATCC
GTGCTGTGCCACCCTTTGTCGGCAATGCCTACATGTTTGACGAGGCGTTC
ACTTGCTCCCAAGAGCACAACACTTGACAAAGAGTGTCAGAAACACCAAG
CATCACACGTCAACAGCGTGGGACACCTCAAACCCCGCGCGACAAATTTC
TCCCTCGTGGTAGGCACTCGTGTGCCTCCTCCCCCTCCCCCCTCCCCCAC
GCACTCCTTCCATGGCGAGCTAAGCAAGGAAGGGCCACTGTTGACGTGTT
GTAGTGACGTGGCCTGCACCTCACCCCGTGTTATTCCTGATAATACTCGA
GTGCCATGTACGTGATTCTCCCCTGTACCGCACACCTTCCACTTCTTCCA
CTTTTATCTCTTTCTCAAGGCCCAGGAGAAGTGTGGGGGAGAGGAAACAA
CGCCGTCAAGCTGCGCAAGACGCTCCCGTGCCACGCGCTGCCAGAGCAGG
CTCGCAGCCTTGATGGCAACCTGCACATGCAGGCGAACGCCATCTCAAGG
CTAACAAACGCAGAACAACAAGCGACAGCAGTTGCTGTTTTGACTCGCGG
ACTTGGACGCTCACCGGCACTCTGTGACATGTGTGCCTTGCCTGGTGGCA
ACTCCGACGTAAGAGGGAACAAGTCTTCAGATTCCAGAGGCTCAATTCAG
GAAAATGGGGTGTGTCCCGCAACGGGCGGCAAAGAGTTACTTGGAGGTAG
GTATACAGCGCCTGTTGTGAGAAAGTTTGGCACGTTGAGCAAGGTCCCAG
TTGGCAGATAGCCATACGGCATGCACAATGAGTAAATGCCTCTAGGTAGG
AAGTACATCGTACATAGAGTAGGTAAGCGTACTCACAACCCCGAAGTACT
ATACTCGTATGTATGTATGACTTCCAAGTACAATTATCCGAGTACTACTC
CGAAGCACGGTAGTTCAGATGCTACCGTAGTACTCATGTTTGTGCCCAGA
AAGAACAAGTACTTCCAGAAAGAAGTACTTCGAAGTACTTCGGAAGTGTG
TCTGCTTCACTGTGAACCAAACTCGGGGTCCTCAAGTTGGCAACACACAT
AGAGCGACGGCAACACTAACACACCCTTGGCCGGCACACCTGTACAGCTT
CCTGGCGAAGCAACTCCTGCAGCCACTCCTGTCACCCCAGCACCCCACGG
GGGCCACTTCACACCAGAATCAGCTCCAGCTCCGGCCTCTGGGCAATCGC
CGCGGTATCGCGAAGCCAAAACACTCCCCGCACTGCCGTCGCAAGATGGA
CTCCCAGGCCAGGCCGCGCCACCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig121:27294..29817+

>mRNA_S-ischiensis_contig121.2800.1 ID=mRNA_S-ischiensis_contig121.2800.1|Name=mRNA_S-ischiensis_contig121.2800.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1152bp|location=Sequence derived from alignment at S-ischiensis_contig121:27294..29817+ (Schizocladia ischiensis KU_0333)
CACCACGCCGGCCACTGTCAGGACTTCAATTTCCTGGGGTGGCTCATCCA
TCTCGTCTGGGGCGGCACTGTCAAGAAGCAGCTCCTTGAGCTTCGTGCGC
TCAGCCACGTTTGTGTTGTGTTCCCGCTCCCGGCTCTTGTAGCTGTCGTT
CTTGTGCTTGATGATGGCGAGTGTTGTGTTGTGGCCCTTCCCCTCGACAC
TGGTGGTGATGTAGACAATGTCATTCCCGAGGGTCTCCCCCCTGCTTCTC
GGGAAGTGCTTCCTGACCAAGGTGTTCACCGTCTTGATGTTGTTGATCCC
TGTGTAGCGCAGGTGGTGCTGCGTGGCGCTGCGGAGGAATTTCTCCACCC
TGGGGTGCCCTTGACAGCGTGTGTCGTGTCCAGTGCCGCGAGAGAGTCGT
CACCACGCCGGCCACTGTCAGGACTTCAATTTCCTGGGGTGGCTCATCCA
TCTCGTCTGGGGCGGCACTGTCAAGAAGCAGCTCCTTGAGCTTCGTGCGC
TCAGCCACGTTTGTGTTGTGTTCCCGCTCCCGGCTCTTGTAGCTGTCGTT
CTTGTGCTTGATGATGGCGAGTGTTGTGTTGTGGCCCTTCCCCTCGACAC
TGGTGGTGATGTAGACAATGTCATTCCCGAGGGTCTCCCCCCTGCTTCTC
GGGAAGTGCTTCCTGACCAAGGTGTTCACCGTCTTGATGTTGTTGATCCC
TGTGTAGCGCAGGTGGTGCTGCGTGGCGCTGCGGAGGAATTTCTCCACCC
TGGGGTGCCCTTGACAGCGTGTGTCGTGTCCAGTGCCGCGAGAGAGTCGT
CTTCCTGGCGAAGCAACTCCTGCAGCCACTCCTGTCACCCCAGCACCCCA
CGGGGGCCACTTCACACCAGAATCAGCTCCAGCTCCGGCCTCTGGGCAAT
CGCCGCGGTATCGCGAAGCCAAAACACTCCCCGCACTGCCGTCGCAAGAT
GGACTCCCAGGCCAGGCCGCGCCACCCTTCCTGGCGAAGCAACTCCTGCA
GCCACTCCTGTCACCCCAGCACCCCACGGGGGCCACTTCACACCAGAATC
AGCTCCAGCTCCGGCCTCTGGGCAATCGCCGCGGTATCGCGAAGCCAAAA
CACTCCCCGCACTGCCGTCGCAAGATGGACTCCCAGGCCAGGCCGCGCCA
CC
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