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Homology
BLAST of mRNA_S-ischiensis_contig121.2798.1 vs. uniprot
Match: D8LL30_ECTSI (VPS9 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL30_ECTSI) HSP 1 Score: 179 bits (455), Expect = 2.540e-49 Identity = 90/138 (65.22%), Postives = 118/138 (85.51%), Query Frame = 1
Query: 61 DRQRRSELLMEARRRRVAWVDEARGVEEGMHGARRRREEESAENLRRAEGELERLFPSAVQFHAFLSHLVGDAEEASAGDLGAILEPFLVEDEHLGGEDKPIPHYRLHARPYDVFLDKLRHPLAAEAVKALQQFVATF 474
D++RR+ELL EARR+RVAWV+EARG+++G+ GAR+RRE+E+A + R+AEGELERLFPSAV+FH FL+ L GD +E+ AGD+ AIL+PF++ED +G +D+PIP YR + P+DVFLDKLRHP AAE VK+LQQFVA F
Sbjct: 24 DQKRRTELLAEARRKRVAWVEEARGIDDGVDGARKRREDEAAASGRKAEGELERLFPSAVKFHDFLTGLAGDRDESPAGDMSAILQPFMIEDVDIG-DDRPIPAYREGSVPFDVFLDKLRHPRAAEVVKSLQQFVAAF 160
BLAST of mRNA_S-ischiensis_contig121.2798.1 vs. uniprot
Match: A0A7S2W9D2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9D2_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 8.270e-5 Identity = 45/137 (32.85%), Postives = 68/137 (49.64%), Query Frame = 1
Query: 70 RRSELLMEARRRRVAWVDEAR---GVEEGMHGARRRREEESAENLRRAEGELERLFPSAVQFHAFLSHLVGDAEEASAGDLGAILEPFLVEDEHLGGEDKPIPHYRL--HARPYDVFLDKLRHPLAAEAVKALQQFV 465
R+ LL+EARR+R++WV+ AR G+ H + R + +A+ L + PS+ FL+ + D EA +V D H D PIP + A Y V L+KL+HP AAE VK +++F+
Sbjct: 57 RKESLLIEARRKRISWVEAARDGSGLGADGHASHWHRVDPAAKMLESTKAGS--ALPSSPALVQFLADQL-DPTEAE-----------IVADAHAVQSDIPIPTHDSMPDATSYQVLLEKLKHPSAAEVVKMMERFI 179
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 180.6 |
| Seed ortholog evalue | 7.6e-43 |
| Seed eggNOG ortholog | 2880.D8LL30 |
| Preferred name | VPS9 |
| KEGG ko | ko:K20131 |
| GOs | GO:0000011,GO:0003674,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006996,GO:0007033,GO:0007034,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019899,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0036010,GO:0042886,GO:0043130,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048308,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0098772 |
| EggNOG free text desc. | guanyl-nucleotide exchange factor activity |
| EggNOG OGs | COG0666@1,KOG2319@2759 |
| COG Functional cat. | GM |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04131 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Vacuolar sorting protein 9 |
| Ec32 ortholog | Ec-26_003520.1 |
| Exons | 3 |
| Model size | 646 |
| Cds size | 645 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815666.3521745-CDS-S-ischiensis_contig121:10872..11184 | 1622815666.3521745-CDS-S-ischiensis_contig121:10872..11184 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig121 10873..11184 - |
| 1695739838.8385062-CDS-S-ischiensis_contig121:10872..11184 | 1695739838.8385062-CDS-S-ischiensis_contig121:10872..11184 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig121 10873..11184 - |
| 1622815666.3632815-CDS-S-ischiensis_contig121:11632..11743 | 1622815666.3632815-CDS-S-ischiensis_contig121:11632..11743 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig121 11633..11743 - |
| 1695739838.8520844-CDS-S-ischiensis_contig121:11632..11743 | 1695739838.8520844-CDS-S-ischiensis_contig121:11632..11743 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig121 11633..11743 - |
| 1622815666.3738856-CDS-S-ischiensis_contig121:12786..13008 | 1622815666.3738856-CDS-S-ischiensis_contig121:12786..13008 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig121 12787..13008 - |
| 1695739838.8616593-CDS-S-ischiensis_contig121:12786..13008 | 1695739838.8616593-CDS-S-ischiensis_contig121:12786..13008 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig121 12787..13008 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig121.2798.1 >prot_S-ischiensis_contig121.2798.1 ID=prot_S-ischiensis_contig121.2798.1|Name=mRNA_S-ischiensis_contig121.2798.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=215bp
RTRGGTPPHQGVRARAMSKCDRQRRSELLMEARRRRVAWVDEARGVEEGM
HGARRRREEESAENLRRAEGELERLFPSAVQFHAFLSHLVGDAEEASAGD
LGAILEPFLVEDEHLGGEDKPIPHYRLHARPYDVFLDKLRHPLAAEAVKA
LQQFVATFVDKAADSAANGPRSRGGGKKRDPRAPPRGARPESPWQASGAN
GAAAATTPPSPESPP back to topmRNA from alignment at S-ischiensis_contig121:10872..13008- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig121.2798.1 ID=mRNA_S-ischiensis_contig121.2798.1|Name=mRNA_S-ischiensis_contig121.2798.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2137bp|location=Sequence derived from alignment at S-ischiensis_contig121:10872..13008- (Schizocladia ischiensis KU_0333)
CGGACTCGAGGCGGAACCCCGCCGCACCAAGGAGTCCGTGCCCGTGCCAT
GAGCAAATGTGACAGGCAGAGGAGGTCCGAGCTCCTCATGGAGGCTCGGA
GGCGGCGCGTGGCATGGGTGGACGAGGCGAGAGGAGTTGAAGAGGGGATG
CACGGGGCGAGGAGGCGGAGGGAAGAAGAGTCCGCCGAGAACCTTCGACG
AGCGGAGGGGGAGCTGGAGCGGGTGAGTTTGCGCTACGGGAGTCCAACCC
TGGAGTGGCTCCTGTGTTACATGGCCCTCCATCTCATTCCCTGGTCGCCA
TGTGCGCTTGTTCCCGTCATGCAGTCTGCTGTAGCCGTATAACCGGTCCA
AGGCAAATTGAAACAGTTATGGTCATGGGCTCTGGCGCGTGCAGAGCACT
TACCAGCACCCCTTTGGCACTTTTTGCTAGGACAGGCACTGGACCCCGAC
CGAGCAGCAGTACTGGCACTCTGCGACATGTATTGCAAGCGCTGGCGTTA
CCATACAGACCCATCATGTTTGATCAAAACAAAGAGCCACAGACTTCAAA
ATCTGTTCTCGTCCTCGAAACGAGTACTTGTACAAGTACCAACACCTTTT
CATTATCCGGTAGACCTTGGTGATGCCAGTGGAAAGAGCACCAGCGCGTG
TTTGCCAAATCTGGTTGGACAGGCACCGGGGCCCAGAACAAGCACGAGTA
CAAGTTTGTGAGTACAAGCACCTACAGTAGGCGCAGACGAACTACCTGTG
CTACTGGAGGGTGGGCCCCCTGGCCTCCCCGACAACGCCCGCCTAGCTAC
TGCACTTCGAAGTAGTTTGCAGCAGTGACAACTGTATTGCATGTACATTA
GTTGGTACCGCCCGGTAGGTCGAGCGAGGCCTTGTCACTGCAGTGCCAGC
ACTGATGGACGCGCCCCCAGGAGAGCAGTGGTGCAGTAGAGTACTTGTGG
TGATGTTCAAGGTTTTGCATGGGTCTCGCTCACAGTATCTCCTCCACTCC
CTCCACCCCCCCCTCTCCTTCCCTCTCTCCCTCTCGCCGGCTGTTCCGCT
CAGCCATTATCATCTGTCACTCCCAGCTCTCCCCCGCTCCCTCCCCCCCA
ACCCCCCCGCTTTCCCTCGTCTCCTTCTCTCCTGGTATATTCCCCTCAGC
CATTCTCTTGCACTCACCATCTCTCCCCCCCTCCCTCCTCTCCCCCCCTT
CATCCCCTCGTCTCTCTCTCTCTCTATATATATATATATCTTCCTCTACC
TTTATATATATATAGCTATTCCCCTCGGCCGTGCAGTTCCACGCCTTCCT
GTCGCACCTTGTGGGGGACGCGGAGGAGGCCTCGGCTGGCGACCTCGGCG
CCATTCTAGAGCCCTTCTTGGTGGAGGTGGGTGGTGATTCGTATAAATTG
TAGCGAGGTACAATCGTGTGAGATTGAATGTTCTCGGGTCGGTGTGGCCC
AGGCAACTGTACAGTTTACCTGCTGGAGGAGGGGGCGGCATTCTCTGCAG
TTTTGGGGTTAGCTGGCAAGGCTTAAGTTGCGAGTTGAACTGGAGGCTGG
TTTTGGCCCGGTTCAGTCTGGTTGGTTTGCTCGATAGCGGCTAAATACTG
TTTTTGCAGCTGTCGGCAACAACGGTCGCTGTCACCATACGCCCGATGCG
GCCAAGCCTCTTGGTCGGGTGACTGGTCAAACCAGTCAGCTGGCATGTAC
TTACAGTACCGGTTCGCCACAAGTGGCACTACTCCAACCCACCCACCCAC
CCACCCACCCACCCTCCCACCCATCCCTCCACCCTTCCACCACTGTCCCC
GTCCCCGCCCGTCTCGGCCACCAGGACGAGCACCTGGGGGGCGAGGACAA
GCCCATCCCCCACTACCGCCTGCACGCCCGCCCTTACGACGTCTTCCTCG
ACAAGCTGCGCCACCCGCTCGCCGCCGAGGCCGTCAAGGCGCTGCAGCAG
TTCGTCGCCACCTTCGTGGACAAGGCCGCCGACTCCGCCGCCAACGGCCC
CCGCAGCCGCGGCGGCGGCAAAAAACGCGACCCCCGCGCCCCGCCACGCG
GCGCCCGCCCAGAGAGCCCCTGGCAGGCGTCCGGCGCCAACGGCGCTGCC
GCCGCCACCACCCCGCCCTCGCCCGAGTCGCCGCCGG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig121:10872..13008- >mRNA_S-ischiensis_contig121.2798.1 ID=mRNA_S-ischiensis_contig121.2798.1|Name=mRNA_S-ischiensis_contig121.2798.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1290bp|location=Sequence derived from alignment at S-ischiensis_contig121:10872..13008- (Schizocladia ischiensis KU_0333)
CGGACTCGAGGCGGAACCCCGCCGCACCAAGGAGTCCGTGCCCGTGCCAT
GAGCAAATGTGACAGGCAGAGGAGGTCCGAGCTCCTCATGGAGGCTCGGA
GGCGGCGCGTGGCATGGGTGGACGAGGCGAGAGGAGTTGAAGAGGGGATG
CACGGGGCGAGGAGGCGGAGGGAAGAAGAGTCCGCCGAGAACCTTCGACG
AGCGGAGGGGGAGCTGGAGCGGCGGACTCGAGGCGGAACCCCGCCGCACC
AAGGAGTCCGTGCCCGTGCCATGAGCAAATGTGACAGGCAGAGGAGGTCC
GAGCTCCTCATGGAGGCTCGGAGGCGGCGCGTGGCATGGGTGGACGAGGC
GAGAGGAGTTGAAGAGGGGATGCACGGGGCGAGGAGGCGGAGGGAAGAAG
AGTCCGCCGAGAACCTTCGACGAGCGGAGGGGGAGCTGGAGCGGCTATTC
CCCTCGGCCGTGCAGTTCCACGCCTTCCTGTCGCACCTTGTGGGGGACGC
GGAGGAGGCCTCGGCTGGCGACCTCGGCGCCATTCTAGAGCCCTTCTTGG
TGGAGCTATTCCCCTCGGCCGTGCAGTTCCACGCCTTCCTGTCGCACCTT
GTGGGGGACGCGGAGGAGGCCTCGGCTGGCGACCTCGGCGCCATTCTAGA
GCCCTTCTTGGTGGAGGACGAGCACCTGGGGGGCGAGGACAAGCCCATCC
CCCACTACCGCCTGCACGCCCGCCCTTACGACGTCTTCCTCGACAAGCTG
CGCCACCCGCTCGCCGCCGAGGCCGTCAAGGCGCTGCAGCAGTTCGTCGC
CACCTTCGTGGACAAGGCCGCCGACTCCGCCGCCAACGGCCCCCGCAGCC
GCGGCGGCGGCAAAAAACGCGACCCCCGCGCCCCGCCACGCGGCGCCCGC
CCAGAGAGCCCCTGGCAGGCGTCCGGCGCCAACGGCGCTGCCGCCGCCAC
CACCCCGCCCTCGCCCGAGTCGCCGCCGGACGAGCACCTGGGGGGCGAGG
ACAAGCCCATCCCCCACTACCGCCTGCACGCCCGCCCTTACGACGTCTTC
CTCGACAAGCTGCGCCACCCGCTCGCCGCCGAGGCCGTCAAGGCGCTGCA
GCAGTTCGTCGCCACCTTCGTGGACAAGGCCGCCGACTCCGCCGCCAACG
GCCCCCGCAGCCGCGGCGGCGGCAAAAAACGCGACCCCCGCGCCCCGCCA
CGCGGCGCCCGCCCAGAGAGCCCCTGGCAGGCGTCCGGCGCCAACGGCGC
TGCCGCCGCCACCACCCCGCCCTCGCCCGAGTCGCCGCCG back to top
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