mRNA_S-ischiensis_contig120.2795.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A2Z6MNB3_TRISU (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MNB3_TRISU) HSP 1 Score: 149 bits (377), Expect = 1.240e-35 Identity = 81/242 (33.47%), Postives = 140/242 (57.85%), Query Frame = 1
Query: 1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDG-------SVARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHE 705
+D+ +TF+PV L+ VR +L+ AA+ WP+ LD +LN L+E++++++P G +V + NK+LYGL QS W+++ ++ + TD L+ + S+DG+I +L+ YVDD++ TG+ +E+ R++EKL + +DLG+ F+G + S +GI + QQ Y + +K G + R TP+DP L +K + Y ++GKL++L+ T PD+A S +E
Sbjct: 561 IDYSETFAPVAKLNTVRILLSLAANLDWPLHQLDVKNVFLNGDLEEEVYMDIPPGFEDRFGSNVCKLNKSLYGLKQSPRAWFEKFTQSMKKQGYIQGQTDHTLFTKFSQDGKIAVLIVYVDDIVLTGNDTDEMGRVKEKLAVDFEIKDLGSMRYFLGMEVARSKDGIVVSQQKYILDL-LKETGMSGCRPADTPMDPNAKLW----EKGSVPVDTGRYQRLVGKLIYLSH-TRPDIAFSTNE 796
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A2Z6NG27_TRISU (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NG27_TRISU) HSP 1 Score: 149 bits (376), Expect = 1.330e-35 Identity = 84/254 (33.07%), Postives = 146/254 (57.48%), Query Frame = 1
Query: 1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDG-------SVARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRH 741
+D+ +TF+PV L+ VR +L+ AA+ WP+ LD A+LN L+E++++++P G +V + NK+LYGL QS W+++ ++ + TD L+ + S+DG+I++L+ YVDD++ TG+ E+ R++EKL + ++LG+ F+G + S +GI + QQ Y + +K G + R TP+DP L + +D+ +Y +GKL++L+ T PD+A SV + + SP H
Sbjct: 270 IDYSETFAPVAKLNTVRILLSLAANLDWPLHQLDVKNAFLNGDLEEEVYMDIPPGFEDRFGSNVCKLNKSLYGLKQSPRAWFEKFTQSMKKQGYIQGQTDHTLFTKFSQDGKISILIVYVDDIVLTGNDTVEMGRVKEKLAVDFEIKNLGSMRYFLGMEVARSNDGIVVSQQKYILDL-LKETGMSGCRPADTPMDPNAKLW--EEGSVPVDTGRYQ--RFVGKLIYLSH-TRPDIAFSVSVVSQFMHSPFEEH 517
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A438CYZ7_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CYZ7_VITVI) HSP 1 Score: 147 bits (371), Expect = 2.580e-35 Identity = 82/255 (32.16%), Postives = 146/255 (57.25%), Query Frame = 1
Query: 1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDGS--------VARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRH 741
+DF +TF+PV L+ +R +L+ AA+ W + LD A+LN L+E++++E+P G V + K+LYGL QS W++ I GE+ +D L+ + S G+IT+L+ YVDD++ TG+ EEI R++ L ++ +DLGT F+G + SG+GI + Q+ Y + +K G + ++TP+DP + ++ +D +D +Y ++G+L++L+ T PD++ +V + + +P H
Sbjct: 185 IDFQETFAPVAKLNTIRVLLSLAANLDWNLHQLDVKNAFLNGDLEEEVYMEIPPGLKHSSSNDLVCKLQKSLYGLKQSPRAWFERFTKVIKGEEFSQGQSDHTLFIKRSPGGKITVLIVYVDDIIVTGNDEEEISRLKTVLSKEFEIKDLGTLRYFLGMEVARSGKGIFVSQRKYTLDL-LKETGMLGCKPSNTPMDPFNKIGSK-EDMVAVDKGRYQ--RLVGRLIYLSH-TRPDISFAVSMVSQFMNNPTEEH 434
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A5K0ZZM0_9MAGN (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0ZZM0_9MAGN) HSP 1 Score: 146 bits (369), Expect = 1.480e-34 Identity = 83/252 (32.94%), Postives = 139/252 (55.16%), Query Frame = 1
Query: 1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDG-----SVARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRH 741
+D+ +TF+PV + VR +++ A +W ++ LD A+LN L+E++++ +P G + KALYGL QS W++ LR +L K D L+ + ++ R+TLLL YVDD++ TGD EEI +++ L T++ +DLG F+G + S G+ L+Q+ Y + ++ G R T TP D G LS R D + + + Y ++GKL++L +T PD+ +V+ L + +P H
Sbjct: 653 IDYLETFAPVAKMKTVRVIISLAVMKEWKMYQLDVKNAFLNGDLEEEVYMHMPSGYEEPEKCCKLKKALYGLKQSPRAWFERLRRVMLRHGYKQGNGDHTLFVK--KESRVTLLLVYVDDMIVTGDEEEEIIKLKGLLATEFDLKDLGKLRYFLGMEVARSSTGLVLNQRKYTLDL-LEETGKLGCRPTPTPFDTGHKLSLR-DGEPLCEEDKGRYQRLVGKLIYLT-LTRPDITFAVNVLSQFMHAPTDAH 899
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A2Z6MI24_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MI24_TRISU) HSP 1 Score: 145 bits (367), Expect = 2.610e-34 Identity = 82/253 (32.41%), Postives = 138/253 (54.55%), Query Frame = 1
Query: 4 DFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDGSVARAN------KALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRHW 744
DFF TFSPV L VRT+LA A+HH W + LD A+L+ L ED+++++P+G +A+ N K+LYGL Q++ +WY++L ++ E + +D L+ T +L YVDD++ G EI+R+ L ++ +DLG+ F+G + S +GI + Q+ Y + ++ G + STPLDP + L H D Y ++G+L++L T PD++ + +L + +P + H+
Sbjct: 741 DFFDTFSPVAKLTTVRTLLALASHHHWHLHQLDVNNAFLHGDLHEDVYMQVPEGVLAKPNQVCKSRKSLYGLKQASRKWYEKLSTLLVQEGYHQSSSDYSLF-TFKNKIHFTAILVYVDDIIIAGSSTAEIERIEIILDRQFKIKDLGSLKYFLGLEVAQSSQGITISQRKYCLDL-LEDTGLLGSKPVSTPLDPSLKL---HQDNGAPFEDITQYRRLIGRLLYLT-TTRPDISLATQQLSQFLQAPTVTHY 987
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A2Z7BSD3_9LAMI (Cysteine-rich RLK (Receptor-like protein kinase) 8 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BSD3_9LAMI) HSP 1 Score: 140 bits (354), Expect = 2.900e-34 Identity = 78/254 (30.71%), Postives = 142/254 (55.91%), Query Frame = 1
Query: 1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDG-------SVARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRH 741
+D+ +TF+PV L+ +R +L+ AA+ +WP+ LD A+LN L+E+++++ P G +V R +K+LYGL QS W+++ ++ + +D ++ + S G++ +L+ YVDD++ +G+ EEI R+++ L +++ +DLG F+G + S +GI + Q Y + +K G T R + TP+DP + L D Y ++GKL++L+ T PD+A +V + + SP H
Sbjct: 44 IDYQETFAPVAKLNTIRILLSIAANLEWPLHQLDVKNAFLNGELEEEVFMDAPPGFENHFGGNVCRLHKSLYGLKQSPRAWFEKFSKSVKNQGYTQGQSDHTMFIKSSGTGKVAVLIVYVDDIIISGNDEEEIHRLKKCLSSEFEVKDLGPLRYFLGMEVARSKKGIYVSQMKYILDL-LKDTGMTGCRPSDTPIDPNLKLG---DITQGTPVDVGRYQRLVGKLIYLSH-THPDIAFAVSMVSQFMHSPYEEH 292
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A438FWL8_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FWL8_VITVI) HSP 1 Score: 145 bits (366), Expect = 3.150e-34 Identity = 81/255 (31.76%), Postives = 145/255 (56.86%), Query Frame = 1
Query: 1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDGS--------VARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRH 741
+DF +TF+PV L+ +R +L+ AA+ W + LD A+LN L+E++++E+P G V + K+LYGL QS W++ I GE+ +D L+ + S G+IT+L+ YVDD++ TG+ EEI R++ L ++ +DLGT F+G + S +GI + Q+ Y + +K G + ++TP+DP + ++ +D +D +Y ++G+L++L+ T PD++ +V + + +P H
Sbjct: 425 IDFQETFAPVAKLNTIRVLLSLAANLDWNLHQLDVKNAFLNGDLEEEVYMEIPSGLKLSSSNDLVCKLQKSLYGLKQSPRAWFERFTKVIKGEEFSQGQSDHTLFIKRSPGGKITVLIVYVDDIIVTGNDEEEISRLKTVLSKEFEIKDLGTLRYFLGMEVARSSKGIFVSQRKYTLDL-LKETGMLGCKPSNTPMDPFNKIGSK-EDMVAVDKGRYQ--RLVGRLIYLSH-TRPDISFAVSMVSQFMNNPTEEH 674
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A2K3L409_TRIPR (Pentatricopeptide repeat-containing protein mitochondrial-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L409_TRIPR) HSP 1 Score: 144 bits (363), Expect = 3.450e-34 Identity = 85/254 (33.46%), Postives = 142/254 (55.91%), Query Frame = 1
Query: 1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDG-------SVARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRH 741
+D+ +TF+PV L+ VR +L+ AA+ WP+ LD A+LN +LKE++++++ G +V + NK+LYGL QS W+++ ++ + D L+ + S+DG+I +L+ YVDD++ T + E+ R+++KL + +DLG+ F+G I S EGI + QQ Y + +K G + R TP+DP L +K + Y ++GKL++LA T PD+A SV + + SP H
Sbjct: 222 IDYSETFAPVAKLNTVRILLSLAANLDWPLHQLDVKNAFLNGNLKEEVYMDVSPGFEDKFGSNVCKLNKSLYGLKQSPRAWFEKFTQSMKKQGYIQGQADHTLFTKFSKDGKIVVLIVYVDDIVLTRNDIVEMGRVKKKLAIDFEIKDLGSMRYFLGMEIARSKEGIVVSQQKYILDL-LKETGMSGCRPADTPMDPNAKLW----EKGSVPVDTGRYQRLVGKLIYLAH-TRPDIAFSVSVVSQFMHSPFEEH 469
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A383VEJ4_TETOB (Integrase catalytic domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VEJ4_TETOB) HSP 1 Score: 145 bits (366), Expect = 3.950e-34 Identity = 91/257 (35.41%), Postives = 132/257 (51.36%), Query Frame = 1
Query: 4 DFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDGSV-------ARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRC-SEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRHWWA 750
D+F+ F+PV +R + A AA I ++DF+ A+LN +L+E++W++ P+G V + K+LYGL Q+ W+ L I + K + D CLYY SE T LL YVDD+ E + +KY RDLG + F+G I GI L Q+ N +V K G P+ PG L+ + +D LD+ +YPYA ++G L++LA T PD+A V L R A+P M HW A
Sbjct: 919 DYFEIFTPVGKYTSMRALTAKAAAEDLIIHNIDFSSAFLNGTLEEEVWIKQPEGYVEGEPGMACKLVKSLYGLKQAPRAWHLNLDKIIQEKGFKPSEADPCLYYHTGSEYHPETYLLVYVDDVAIYTKSQESANALISYFSSKYKLRDLGAAELFLGISITRQPTGIKLAQERMINDLVAK-YGMENSNGRLLPMSPGTKLT-KDEDSEPLDTSKYPYATLVGALLYLANCTRPDIAYPVGVLARFMANPGMSHWHA 1173
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A438ERI9_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ERI9_VITVI) HSP 1 Score: 141 bits (356), Expect = 4.500e-34 Identity = 77/250 (30.80%), Postives = 137/250 (54.80%), Query Frame = 1
Query: 1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDG-------SVARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASP 729
+D+ +TF+PV L+ VR +L+ A + WP+ LD A+LN +L+E+++++ P G V + K+LYGL QS W++ + + +D ++ + S DG+I +L+ YVDD++ TGD E+ R+++ L ++ +DLG+ F+G + S GI + Q+ Y + +K G + R TP+DP L +D ++ Y ++GKL++L+ T PD+A +V + + SP
Sbjct: 140 IDYLETFAPVAKLNTVRVLLSIAVNLDWPLQQLDVKNAFLNGNLEEEVYMDPPPGFDEHFGSKVCKLKKSLYGLKQSPRAWFERFTQFVKNQGYVQAQSDHTMFIKHSNDGKIAILIVYVDDIILTGDHVTEMDRLKKSLALEFEIKDLGSLRYFLGMEVARSKRGIVVSQRKYILDL-LKETGMSGCRPADTPIDPNQKLGDTNDGNLVNTTR---YQKLVGKLIYLSH-TRPDIAFAVSIVSQFMHSP 384 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig120.2795.1 >prot_S-ischiensis_contig120.2795.1 ID=prot_S-ischiensis_contig120.2795.1|Name=mRNA_S-ischiensis_contig120.2795.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=138bp MREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSback to top mRNA from alignment at S-ischiensis_contig120:28991..30215- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig120.2795.1 ID=mRNA_S-ischiensis_contig120.2795.1|Name=mRNA_S-ischiensis_contig120.2795.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1225bp|location=Sequence derived from alignment at S-ischiensis_contig120:28991..30215- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig120:28991..30215- >mRNA_S-ischiensis_contig120.2795.1 ID=mRNA_S-ischiensis_contig120.2795.1|Name=mRNA_S-ischiensis_contig120.2795.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=828bp|location=Sequence derived from alignment at S-ischiensis_contig120:28991..30215- (Schizocladia ischiensis KU_0333)back to top |