mRNA_S-ischiensis_contig120.2795.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig120.2795.1
Unique NamemRNA_S-ischiensis_contig120.2795.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A2Z6MNB3_TRISU (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MNB3_TRISU)

HSP 1 Score: 149 bits (377), Expect = 1.240e-35
Identity = 81/242 (33.47%), Postives = 140/242 (57.85%), Query Frame = 1
Query:    1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDG-------SVARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHE 705
            +D+ +TF+PV  L+ VR +L+ AA+  WP+  LD    +LN  L+E++++++P G       +V + NK+LYGL QS   W+++   ++  +      TD  L+ + S+DG+I +L+ YVDD++ TG+  +E+ R++EKL   +  +DLG+   F+G  +  S +GI + QQ Y   + +K  G +  R   TP+DP   L     +K  +      Y  ++GKL++L+  T PD+A S +E
Sbjct:  561 IDYSETFAPVAKLNTVRILLSLAANLDWPLHQLDVKNVFLNGDLEEEVYMDIPPGFEDRFGSNVCKLNKSLYGLKQSPRAWFEKFTQSMKKQGYIQGQTDHTLFTKFSQDGKIAVLIVYVDDIVLTGNDTDEMGRVKEKLAVDFEIKDLGSMRYFLGMEVARSKDGIVVSQQKYILDL-LKETGMSGCRPADTPMDPNAKLW----EKGSVPVDTGRYQRLVGKLIYLSH-TRPDIAFSTNE 796          
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A2Z6NG27_TRISU (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NG27_TRISU)

HSP 1 Score: 149 bits (376), Expect = 1.330e-35
Identity = 84/254 (33.07%), Postives = 146/254 (57.48%), Query Frame = 1
Query:    1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDG-------SVARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRH 741
            +D+ +TF+PV  L+ VR +L+ AA+  WP+  LD   A+LN  L+E++++++P G       +V + NK+LYGL QS   W+++   ++  +      TD  L+ + S+DG+I++L+ YVDD++ TG+   E+ R++EKL   +  ++LG+   F+G  +  S +GI + QQ Y   + +K  G +  R   TP+DP   L    +    +D+ +Y     +GKL++L+  T PD+A SV  + +   SP   H
Sbjct:  270 IDYSETFAPVAKLNTVRILLSLAANLDWPLHQLDVKNAFLNGDLEEEVYMDIPPGFEDRFGSNVCKLNKSLYGLKQSPRAWFEKFTQSMKKQGYIQGQTDHTLFTKFSQDGKISILIVYVDDIVLTGNDTVEMGRVKEKLAVDFEIKNLGSMRYFLGMEVARSNDGIVVSQQKYILDL-LKETGMSGCRPADTPMDPNAKLW--EEGSVPVDTGRYQ--RFVGKLIYLSH-TRPDIAFSVSVVSQFMHSPFEEH 517          
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A438CYZ7_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CYZ7_VITVI)

HSP 1 Score: 147 bits (371), Expect = 2.580e-35
Identity = 82/255 (32.16%), Postives = 146/255 (57.25%), Query Frame = 1
Query:    1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDGS--------VARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRH 741
            +DF +TF+PV  L+ +R +L+ AA+  W +  LD   A+LN  L+E++++E+P G         V +  K+LYGL QS   W++     I GE+     +D  L+ + S  G+IT+L+ YVDD++ TG+  EEI R++  L  ++  +DLGT   F+G  +  SG+GI + Q+ Y   + +K  G    + ++TP+DP   + ++ +D   +D  +Y    ++G+L++L+  T PD++ +V  + +   +P   H
Sbjct:  185 IDFQETFAPVAKLNTIRVLLSLAANLDWNLHQLDVKNAFLNGDLEEEVYMEIPPGLKHSSSNDLVCKLQKSLYGLKQSPRAWFERFTKVIKGEEFSQGQSDHTLFIKRSPGGKITVLIVYVDDIIVTGNDEEEISRLKTVLSKEFEIKDLGTLRYFLGMEVARSGKGIFVSQRKYTLDL-LKETGMLGCKPSNTPMDPFNKIGSK-EDMVAVDKGRYQ--RLVGRLIYLSH-TRPDISFAVSMVSQFMNNPTEEH 434          
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A5K0ZZM0_9MAGN (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0ZZM0_9MAGN)

HSP 1 Score: 146 bits (369), Expect = 1.480e-34
Identity = 83/252 (32.94%), Postives = 139/252 (55.16%), Query Frame = 1
Query:    1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDG-----SVARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRH 741
            +D+ +TF+PV  +  VR +++ A   +W ++ LD   A+LN  L+E++++ +P G        +  KALYGL QS   W++ LR  +L    K    D  L+ +  ++ R+TLLL YVDD++ TGD  EEI +++  L T++  +DLG    F+G  +  S  G+ L+Q+ Y   + ++  G    R T TP D G  LS R D +   +  +  Y  ++GKL++L  +T PD+  +V+ L +   +P   H
Sbjct:  653 IDYLETFAPVAKMKTVRVIISLAVMKEWKMYQLDVKNAFLNGDLEEEVYMHMPSGYEEPEKCCKLKKALYGLKQSPRAWFERLRRVMLRHGYKQGNGDHTLFVK--KESRVTLLLVYVDDMIVTGDEEEEIIKLKGLLATEFDLKDLGKLRYFLGMEVARSSTGLVLNQRKYTLDL-LEETGKLGCRPTPTPFDTGHKLSLR-DGEPLCEEDKGRYQRLVGKLIYLT-LTRPDITFAVNVLSQFMHAPTDAH 899          
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A2Z6MI24_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MI24_TRISU)

HSP 1 Score: 145 bits (367), Expect = 2.610e-34
Identity = 82/253 (32.41%), Postives = 138/253 (54.55%), Query Frame = 1
Query:    4 DFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDGSVARAN------KALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRHW 744
            DFF TFSPV  L  VRT+LA A+HH W +  LD   A+L+  L ED+++++P+G +A+ N      K+LYGL Q++ +WY++L   ++ E    + +D  L+         T +L YVDD++  G    EI+R+   L  ++  +DLG+   F+G  +  S +GI + Q+ Y   + ++  G    +  STPLDP + L   H D          Y  ++G+L++L   T PD++ +  +L +   +P + H+
Sbjct:  741 DFFDTFSPVAKLTTVRTLLALASHHHWHLHQLDVNNAFLHGDLHEDVYMQVPEGVLAKPNQVCKSRKSLYGLKQASRKWYEKLSTLLVQEGYHQSSSDYSLF-TFKNKIHFTAILVYVDDIIIAGSSTAEIERIEIILDRQFKIKDLGSLKYFLGLEVAQSSQGITISQRKYCLDL-LEDTGLLGSKPVSTPLDPSLKL---HQDNGAPFEDITQYRRLIGRLLYLT-TTRPDISLATQQLSQFLQAPTVTHY 987          
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A2Z7BSD3_9LAMI (Cysteine-rich RLK (Receptor-like protein kinase) 8 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BSD3_9LAMI)

HSP 1 Score: 140 bits (354), Expect = 2.900e-34
Identity = 78/254 (30.71%), Postives = 142/254 (55.91%), Query Frame = 1
Query:    1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDG-------SVARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRH 741
            +D+ +TF+PV  L+ +R +L+ AA+ +WP+  LD   A+LN  L+E+++++ P G       +V R +K+LYGL QS   W+++   ++  +      +D  ++ + S  G++ +L+ YVDD++ +G+  EEI R+++ L +++  +DLG    F+G  +  S +GI + Q  Y   + +K  G T  R + TP+DP + L    D           Y  ++GKL++L+  T PD+A +V  + +   SP   H
Sbjct:   44 IDYQETFAPVAKLNTIRILLSIAANLEWPLHQLDVKNAFLNGELEEEVFMDAPPGFENHFGGNVCRLHKSLYGLKQSPRAWFEKFSKSVKNQGYTQGQSDHTMFIKSSGTGKVAVLIVYVDDIIISGNDEEEIHRLKKCLSSEFEVKDLGPLRYFLGMEVARSKKGIYVSQMKYILDL-LKDTGMTGCRPSDTPIDPNLKLG---DITQGTPVDVGRYQRLVGKLIYLSH-THPDIAFAVSMVSQFMHSPYEEH 292          
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A438FWL8_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FWL8_VITVI)

HSP 1 Score: 145 bits (366), Expect = 3.150e-34
Identity = 81/255 (31.76%), Postives = 145/255 (56.86%), Query Frame = 1
Query:    1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDGS--------VARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRH 741
            +DF +TF+PV  L+ +R +L+ AA+  W +  LD   A+LN  L+E++++E+P G         V +  K+LYGL QS   W++     I GE+     +D  L+ + S  G+IT+L+ YVDD++ TG+  EEI R++  L  ++  +DLGT   F+G  +  S +GI + Q+ Y   + +K  G    + ++TP+DP   + ++ +D   +D  +Y    ++G+L++L+  T PD++ +V  + +   +P   H
Sbjct:  425 IDFQETFAPVAKLNTIRVLLSLAANLDWNLHQLDVKNAFLNGDLEEEVYMEIPSGLKLSSSNDLVCKLQKSLYGLKQSPRAWFERFTKVIKGEEFSQGQSDHTLFIKRSPGGKITVLIVYVDDIIVTGNDEEEISRLKTVLSKEFEIKDLGTLRYFLGMEVARSSKGIFVSQRKYTLDL-LKETGMLGCKPSNTPMDPFNKIGSK-EDMVAVDKGRYQ--RLVGRLIYLSH-TRPDISFAVSMVSQFMNNPTEEH 674          
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A2K3L409_TRIPR (Pentatricopeptide repeat-containing protein mitochondrial-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L409_TRIPR)

HSP 1 Score: 144 bits (363), Expect = 3.450e-34
Identity = 85/254 (33.46%), Postives = 142/254 (55.91%), Query Frame = 1
Query:    1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDG-------SVARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRH 741
            +D+ +TF+PV  L+ VR +L+ AA+  WP+  LD   A+LN +LKE++++++  G       +V + NK+LYGL QS   W+++   ++  +       D  L+ + S+DG+I +L+ YVDD++ T +   E+ R+++KL   +  +DLG+   F+G  I  S EGI + QQ Y   + +K  G +  R   TP+DP   L     +K  +      Y  ++GKL++LA  T PD+A SV  + +   SP   H
Sbjct:  222 IDYSETFAPVAKLNTVRILLSLAANLDWPLHQLDVKNAFLNGNLKEEVYMDVSPGFEDKFGSNVCKLNKSLYGLKQSPRAWFEKFTQSMKKQGYIQGQADHTLFTKFSKDGKIVVLIVYVDDIVLTRNDIVEMGRVKKKLAIDFEIKDLGSMRYFLGMEIARSKEGIVVSQQKYILDL-LKETGMSGCRPADTPMDPNAKLW----EKGSVPVDTGRYQRLVGKLIYLAH-TRPDIAFSVSVVSQFMHSPFEEH 469          
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A383VEJ4_TETOB (Integrase catalytic domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VEJ4_TETOB)

HSP 1 Score: 145 bits (366), Expect = 3.950e-34
Identity = 91/257 (35.41%), Postives = 132/257 (51.36%), Query Frame = 1
Query:    4 DFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDGSV-------ARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRC-SEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASPCMRHWWA 750
            D+F+ F+PV     +R + A AA     I ++DF+ A+LN +L+E++W++ P+G V        +  K+LYGL Q+   W+  L   I  +  K +  D CLYY   SE    T LL YVDD+       E    +     +KY  RDLG  + F+G  I     GI L Q+   N +V K  G         P+ PG  L+ + +D   LD+ +YPYA ++G L++LA  T PD+A  V  L R  A+P M HW A
Sbjct:  919 DYFEIFTPVGKYTSMRALTAKAAAEDLIIHNIDFSSAFLNGTLEEEVWIKQPEGYVEGEPGMACKLVKSLYGLKQAPRAWHLNLDKIIQEKGFKPSEADPCLYYHTGSEYHPETYLLVYVDDVAIYTKSQESANALISYFSSKYKLRDLGAAELFLGISITRQPTGIKLAQERMINDLVAK-YGMENSNGRLLPMSPGTKLT-KDEDSEPLDTSKYPYATLVGALLYLANCTRPDIAYPVGVLARFMANPGMSHWHA 1173          
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Match: A0A438ERI9_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ERI9_VITVI)

HSP 1 Score: 141 bits (356), Expect = 4.500e-34
Identity = 77/250 (30.80%), Postives = 137/250 (54.80%), Query Frame = 1
Query:    1 VDFFQTFSPVCGLDVVRTVLAAAAHHQWPIFSLDFTQAYLNASLKEDIWLELPDG-------SVARANKALYGLLQSALEWYKELRATILGEDRKSTPTDECLYYRCSEDGRITLLLTYVDDLLSTGDFNEEIQRMREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGSTELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPDLASSVHELGRRAASP 729
            +D+ +TF+PV  L+ VR +L+ A +  WP+  LD   A+LN +L+E+++++ P G        V +  K+LYGL QS   W++     +  +      +D  ++ + S DG+I +L+ YVDD++ TGD   E+ R+++ L  ++  +DLG+   F+G  +  S  GI + Q+ Y   + +K  G +  R   TP+DP   L   +D      ++   Y  ++GKL++L+  T PD+A +V  + +   SP
Sbjct:  140 IDYLETFAPVAKLNTVRVLLSIAVNLDWPLQQLDVKNAFLNGNLEEEVYMDPPPGFDEHFGSKVCKLKKSLYGLKQSPRAWFERFTQFVKNQGYVQAQSDHTMFIKHSNDGKIAILIVYVDDIILTGDHVTEMDRLKKSLALEFEIKDLGSLRYFLGMEVARSKRGIVVSQRKYILDL-LKETGMSGCRPADTPIDPNQKLGDTNDGNLVNTTR---YQKLVGKLIYLSH-TRPDIAFAVSIVSQFMHSP 384          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig120.2795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z6MNB3_TRISU1.240e-3533.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2Z6NG27_TRISU1.330e-3533.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438CYZ7_VITVI2.580e-3532.16Retrovirus-related Pol polyprotein from transposon... [more]
A0A5K0ZZM0_9MAGN1.480e-3432.94Integrase catalytic domain-containing protein (Fra... [more]
A0A2Z6MI24_TRISU2.610e-3432.41Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A2Z7BSD3_9LAMI2.900e-3430.71Cysteine-rich RLK (Receptor-like protein kinase) 8... [more]
A0A438FWL8_VITVI3.150e-3431.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3L409_TRIPR3.450e-3433.46Pentatricopeptide repeat-containing protein mitoch... [more]
A0A383VEJ4_TETOB3.950e-3435.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A438ERI9_VITVI4.500e-3430.80Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig120contigS-ischiensis_contig120:28991..30215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog164328.Phyra86000
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QIR3@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1225
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig120.2795.1prot_S-ischiensis_contig120.2795.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig120 29418..29831 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.1251822-UTR-S-ischiensis_contig120:28990..294171622815666.1251822-UTR-S-ischiensis_contig120:28990..29417Schizocladia ischiensis KU_0333UTRS-ischiensis_contig120 28991..29417 -
1695739838.712942-UTR-S-ischiensis_contig120:28990..294171695739838.712942-UTR-S-ischiensis_contig120:28990..29417Schizocladia ischiensis KU_0333UTRS-ischiensis_contig120 28991..29417 -
1622815666.1486201-UTR-S-ischiensis_contig120:29831..302151622815666.1486201-UTR-S-ischiensis_contig120:29831..30215Schizocladia ischiensis KU_0333UTRS-ischiensis_contig120 29832..30215 -
1695739838.732916-UTR-S-ischiensis_contig120:29831..302151695739838.732916-UTR-S-ischiensis_contig120:29831..30215Schizocladia ischiensis KU_0333UTRS-ischiensis_contig120 29832..30215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.137036-CDS-S-ischiensis_contig120:29417..298311622815666.137036-CDS-S-ischiensis_contig120:29417..29831Schizocladia ischiensis KU_0333CDSS-ischiensis_contig120 29418..29831 -
1695739838.7250967-CDS-S-ischiensis_contig120:29417..298311695739838.7250967-CDS-S-ischiensis_contig120:29417..29831Schizocladia ischiensis KU_0333CDSS-ischiensis_contig120 29418..29831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig120.2795.1

>prot_S-ischiensis_contig120.2795.1 ID=prot_S-ischiensis_contig120.2795.1|Name=mRNA_S-ischiensis_contig120.2795.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=138bp
MREKLLTKYSGRDLGTPDQFVGARIGVSGEGIALDQQLYANSIVIKGMGS
TELRNTSTPLDPGMDLSARHDDKAELDSKQYPYANILGKLMFLAGMTCPD
LASSVHELGRRAASPCMRHWWACSTFCGTWLGHWTCA*
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mRNA from alignment at S-ischiensis_contig120:28991..30215-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig120.2795.1 ID=mRNA_S-ischiensis_contig120.2795.1|Name=mRNA_S-ischiensis_contig120.2795.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1225bp|location=Sequence derived from alignment at S-ischiensis_contig120:28991..30215- (Schizocladia ischiensis KU_0333)
GTGGACTTCTTCCAGACCTTCAGCCCCGTGTGTGGCCTCGACGTGGTACG GACGGTCCTCGCGGCCGCCGCGCACCATCAGTGGCCCATCTTCTCTCTGG ACTTCACACAGGCCTACCTGAACGCATCGCTCAAGGAGGACATCTGGCTG GAGCTACCGGATGGCAGTGTTGCGAGGGCCAACAAGGCGTTGTACGGCTT GCTCCAGTCGGCACTGGAGTGGTACAAGGAGCTGCGCGCCACCATCCTGG GGGAGGACAGGAAGAGCACCCCTACGGACGAGTGCCTCTACTACCGCTGC AGTGAGGACGGCCGCATCACCCTGCTCCTGACGTACGTGGATGACCTGCT CTCCACTGGCGACTTCAACGAGGAGATCCAGAGGATGCGGGAGAAGCTAC TGACCAAGTACAGCGGGCGCGACTTGGGCACCCCGGACCAATTTGTGGGT GCACGAATTGGCGTGAGTGGCGAGGGCATCGCACTGGACCAGCAACTCTA CGCCAACAGCATCGTCATCAAGGGCATGGGCTCAACGGAGCTACGGAACA CATCCACCCCGCTGGACCCGGGAATGGATCTATCAGCGCGGCACGATGAC AAGGCCGAGCTTGACAGCAAGCAGTACCCGTACGCCAACATCTTGGGCAA GCTGATGTTCCTTGCGGGGATGACGTGCCCGGATCTTGCCAGCAGTGTGC ACGAGCTTGGCCGGCGTGCGGCATCACCCTGCATGAGGCATTGGTGGGCC TGCAGCACGTTCTGCGGTACCTGGCTGGGACACTGGACGTGTGCATAAAG TGCAAGACAAGCACTGGACACATTGGCGACGGGCAAGAACTGGCAGGCTA CTCGGACTCCGACTGGGGCAATGTCACGGAGATGCAGCGGAGCATCACCG GATACCTCCTGCTCTACCATGGAGCCCCGGTTGCGTGGCGGTCCAAGCAG CAAGGTGCCGTGACCCTGCCAAGCTCTGAGGCGGAGTGGACTGAATCTTC CTCCATGACATGATGGGGGAGATTGGTGTTCCGCAGGAGCCAACGCTGTG GTACGAGGACAACAAGGGAGCCATCCAGGCGGCAACCATCACGGGCTTCA ACGGTCGCACCAAGCACGTAGATGTGAAGCTCAAGTGCACTCGAGAGTAC GTGGACCAGGGACTCTTCCAGGTCCGGTACGTTCCGACTAAACAGCAGCT TGCAGACATCCTGACCAAGCGCCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig120:28991..30215-

>mRNA_S-ischiensis_contig120.2795.1 ID=mRNA_S-ischiensis_contig120.2795.1|Name=mRNA_S-ischiensis_contig120.2795.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=828bp|location=Sequence derived from alignment at S-ischiensis_contig120:28991..30215- (Schizocladia ischiensis KU_0333)
ATGCGGGAGAAGCTACTGACCAAGTACAGCGGGCGCGACTTGGGCACCCC
GGACCAATTTGTGGGTGCACGAATTGGCGTGAGTGGCGAGGGCATCGCAC
TGGACCAGCAACTCTACGCCAACAGCATCGTCATCAAGGGCATGGGCTCA
ACGGAGCTACGGAACACATCCACCCCGCTGGACCCGGGAATGGATCTATC
AGCGCGGCACGATGACAAGGCCGAGCTTGACAGCAAGCAGTACCCGTACG
CCAACATCTTGGGCAAGCTGATGTTCCTTGCGGGGATGACGTGCCCGGAT
CTTGCCAGCAGTGTGCACGAGCTTGGCCGGCGTGCGGCATCACCCTGCAT
GAGGCATTGGTGGGCCTGCAGCACGTTCTGCGGTACCTGGCTGGGACACT
GGACGTGTGCATAAATGCGGGAGAAGCTACTGACCAAGTACAGCGGGCGC
GACTTGGGCACCCCGGACCAATTTGTGGGTGCACGAATTGGCGTGAGTGG
CGAGGGCATCGCACTGGACCAGCAACTCTACGCCAACAGCATCGTCATCA
AGGGCATGGGCTCAACGGAGCTACGGAACACATCCACCCCGCTGGACCCG
GGAATGGATCTATCAGCGCGGCACGATGACAAGGCCGAGCTTGACAGCAA
GCAGTACCCGTACGCCAACATCTTGGGCAAGCTGATGTTCCTTGCGGGGA
TGACGTGCCCGGATCTTGCCAGCAGTGTGCACGAGCTTGGCCGGCGTGCG
GCATCACCCTGCATGAGGCATTGGTGGGCCTGCAGCACGTTCTGCGGTAC
CTGGCTGGGACACTGGACGTGTGCATAA
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