mRNA_S-ischiensis_contig12.2794.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2794.1
Unique NamemRNA_S-ischiensis_contig12.2794.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:3403052..3403979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size928
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2794.1prot_S-ischiensis_contig12.2794.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 3403274..3403813 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.0409818-UTR-S-ischiensis_contig12:3403051..34032731622815666.0409818-UTR-S-ischiensis_contig12:3403051..3403273Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 3403052..3403273 +
1695739838.6786225-UTR-S-ischiensis_contig12:3403051..34032731695739838.6786225-UTR-S-ischiensis_contig12:3403051..3403273Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 3403052..3403273 +
1622815666.0633678-UTR-S-ischiensis_contig12:3403813..34039791622815666.0633678-UTR-S-ischiensis_contig12:3403813..3403979Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 3403814..3403979 +
1695739838.6945019-UTR-S-ischiensis_contig12:3403813..34039791695739838.6945019-UTR-S-ischiensis_contig12:3403813..3403979Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 3403814..3403979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.0529506-CDS-S-ischiensis_contig12:3403273..34038131622815666.0529506-CDS-S-ischiensis_contig12:3403273..3403813Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3403274..3403813 +
1695739838.6865752-CDS-S-ischiensis_contig12:3403273..34038131695739838.6865752-CDS-S-ischiensis_contig12:3403273..3403813Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3403274..3403813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2794.1

>prot_S-ischiensis_contig12.2794.1 ID=prot_S-ischiensis_contig12.2794.1|Name=mRNA_S-ischiensis_contig12.2794.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=180bp
MSSTKVIDSVQTFRYSGQRTDFRRWKARIQAVLRTKRLWDIISGGESERP
RRANHSEAAEIWRQKNTELYDQLVLALDDVSLDAIALAGDRDGPAAWTKF
CEHHEGKAKNRKINLLVELLSKAPTGKDSEAELATLESLKGQLRELDFEV
EDELTQGILLLALPKDYEPVRCSSSRVLS*
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mRNA from alignment at S-ischiensis_contig12:3403052..3403979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2794.1 ID=mRNA_S-ischiensis_contig12.2794.1|Name=mRNA_S-ischiensis_contig12.2794.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=928bp|location=Sequence derived from alignment at S-ischiensis_contig12:3403052..3403979+ (Schizocladia ischiensis KU_0333)
GCCTTGCTGGTTGAAGGAGCCATCGCGGCTCAGAGGAGTACCGACCGCGG
GGTGCGAGGCCCTGCTGGTTGAAGGAGCCAGCTAACGGCTCGGAGGATAC
CAACCGGGGGGGGCGCGGAGGTCCTGCCAGTTGAGGGAGCCTGCGTGGCT
CGCGGTGACGGTACAGACTGTACCGGGTGAAGTCCGGCTTGCCGACCGGC
AAGGGGAGGGTGGGAGCACAAGATGAGCTCCACCAAGGTGATTGACAGCG
TGCAGACCTTCCGGTACTCCGGGCAGAGGACGGATTTCCGGCGTTGGAAA
GCGCGCATCCAGGCGGTGCTAAGGACAAAGAGGCTTTGGGACATCATCAG
CGGAGGAGAGTCCGAACGGCCCAGGCGCGCCAACCACAGTGAGGCGGCCG
AGATCTGGCGGCAGAAGAACACGGAGCTGTACGACCAGTTGGTGTTAGCA
TTGGACGATGTGAGTTTGGATGCGATTGCACTGGCTGGTGACAGGGACGG
GCCAGCCGCGTGGACGAAGTTTTGCGAGCATCATGAAGGCAAGGCCAAGA
ACCGTAAGATCAATCTGCTGGTAGAGCTGTTGTCTAAGGCGCCTACTGGC
AAGGATTCGGAGGCGGAGTTGGCGACGTTAGAGTCTCTGAAGGGGCAGCT
GAGGGAGCTTGACTTTGAGGTAGAGGATGAGCTTACGCAGGGCATTCTGC
TGTTGGCATTGCCCAAGGACTACGAGCCTGTCCGGTGTTCATCGAGTCGA
GTGCTGAGTTGACGTACCAGCGCGCGAAGGAGGTAGTGCTGAACCATAGC
GCTAGGTCGCAGGGCGAGAATGGTAAGCACGGCAAGGTTGGTAGCAGCAG
CGGTAGGTACAGGGGACATGGTGTGGAGGATGCCCTTGTGGCCGATGACC
GGCGGGGCACGGGAAGGTTTGTTGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:3403052..3403979+

>mRNA_S-ischiensis_contig12.2794.1 ID=mRNA_S-ischiensis_contig12.2794.1|Name=mRNA_S-ischiensis_contig12.2794.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1080bp|location=Sequence derived from alignment at S-ischiensis_contig12:3403052..3403979+ (Schizocladia ischiensis KU_0333)
ATGAGCTCCACCAAGGTGATTGACAGCGTGCAGACCTTCCGGTACTCCGG
GCAGAGGACGGATTTCCGGCGTTGGAAAGCGCGCATCCAGGCGGTGCTAA
GGACAAAGAGGCTTTGGGACATCATCAGCGGAGGAGAGTCCGAACGGCCC
AGGCGCGCCAACCACAGTGAGGCGGCCGAGATCTGGCGGCAGAAGAACAC
GGAGCTGTACGACCAGTTGGTGTTAGCATTGGACGATGTGAGTTTGGATG
CGATTGCACTGGCTGGTGACAGGGACGGGCCAGCCGCGTGGACGAAGTTT
TGCGAGCATCATGAAGGCAAGGCCAAGAACCGTAAGATCAATCTGCTGGT
AGAGCTGTTGTCTAAGGCGCCTACTGGCAAGGATTCGGAGGCGGAGTTGG
CGACGTTAGAGTCTCTGAAGGGGCAGCTGAGGGAGCTTGACTTTGAGGTA
GAGGATGAGCTTACGCAGGGCATTCTGCTGTTGGCATTGCCCAAGGACTA
CGAGCCTGTCCGGTGTTCATCGAGTCGAGTGCTGAGTTGAATGAGCTCCA
CCAAGGTGATTGACAGCGTGCAGACCTTCCGGTACTCCGGGCAGAGGACG
GATTTCCGGCGTTGGAAAGCGCGCATCCAGGCGGTGCTAAGGACAAAGAG
GCTTTGGGACATCATCAGCGGAGGAGAGTCCGAACGGCCCAGGCGCGCCA
ACCACAGTGAGGCGGCCGAGATCTGGCGGCAGAAGAACACGGAGCTGTAC
GACCAGTTGGTGTTAGCATTGGACGATGTGAGTTTGGATGCGATTGCACT
GGCTGGTGACAGGGACGGGCCAGCCGCGTGGACGAAGTTTTGCGAGCATC
ATGAAGGCAAGGCCAAGAACCGTAAGATCAATCTGCTGGTAGAGCTGTTG
TCTAAGGCGCCTACTGGCAAGGATTCGGAGGCGGAGTTGGCGACGTTAGA
GTCTCTGAAGGGGCAGCTGAGGGAGCTTGACTTTGAGGTAGAGGATGAGC
TTACGCAGGGCATTCTGCTGTTGGCATTGCCCAAGGACTACGAGCCTGTC
CGGTGTTCATCGAGTCGAGTGCTGAGTTGA
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