mRNA_S-ischiensis_contig12.2788.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2788.1
Unique NamemRNA_S-ischiensis_contig12.2788.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:3304113..3304627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.016199-CDS-S-ischiensis_contig12:3304112..33046251622815640.016199-CDS-S-ischiensis_contig12:3304112..3304625Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3304113..3304625 +
1695739820.3940847-CDS-S-ischiensis_contig12:3304112..33046251695739820.3940847-CDS-S-ischiensis_contig12:3304112..3304625Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3304113..3304625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2788.1prot_S-ischiensis_contig12.2788.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 3304113..3304625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2788.1

>prot_S-ischiensis_contig12.2788.1 ID=prot_S-ischiensis_contig12.2788.1|Name=mRNA_S-ischiensis_contig12.2788.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=171bp
SPSALAPAALLERALLFHGLVICRGQLRVQVGIHACQGCACVCACVRDGD
CCDGRLPVLTVPYGLVGEGPPHPDSQESGWGEHGLVHPSASGGGASHPLP
PWLCQGREGSCSVWTEAHGQWSRDYGKHNVSTYIYIYTWVYMCVCVCCGR
YTRPGAIHVATDEVTAVGDGR
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mRNA from alignment at S-ischiensis_contig12:3304113..3304627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2788.1 ID=mRNA_S-ischiensis_contig12.2788.1|Name=mRNA_S-ischiensis_contig12.2788.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=515bp|location=Sequence derived from alignment at S-ischiensis_contig12:3304113..3304627+ (Schizocladia ischiensis KU_0333)
TCCCCCTCGGCCTTGGCACCGGCCGCGCTCCTGGAGCGCGCGCTCCTCTT
TCATGGACTCGTCATTTGCCGTGGCCAGCTCCGGGTCCAGGTTGGGATCC
ACGCCTGCCAAGGGTGTGCGTGCGTGTGCGCGTGTGTGCGAGACGGCGAT
TGTTGTGACGGCAGGCTGCCTGTGCTGACCGTACCCTATGGCCTAGTAGG
GGAGGGGCCCCCCCACCCCGACTCTCAGGAGTCGGGATGGGGGGAGCATG
GACTTGTCCATCCCTCCGCTTCTGGCGGGGGGGCTAGCCACCCCCTCCCG
CCCTGGCTCTGCCAGGGGAGGGAGGGGTCCTGCTCCGTCTGGACCGAGGC
GCATGGTCAATGGTCTCGGGACTACGGCAAGCACAACGTGAGTACATATA
TATACATATATACCTGGGTATATATGTGTGTGTGTGTGTGCTGCGGAAGA
TACACGCGGCCAGGTGCGATCCATGTTGCCACTGATGAGGTCACAGCGGT
GGGTGATGGTCGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:3304113..3304627+

>mRNA_S-ischiensis_contig12.2788.1 ID=mRNA_S-ischiensis_contig12.2788.1|Name=mRNA_S-ischiensis_contig12.2788.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1026bp|location=Sequence derived from alignment at S-ischiensis_contig12:3304113..3304627+ (Schizocladia ischiensis KU_0333)
TCCCCCTCGGCCTTGGCACCGGCCGCGCTCCTGGAGCGCGCGCTCCTCTT
TCATGGACTCGTCATTTGCCGTGGCCAGCTCCGGGTCCAGGTTGGGATCC
ACGCCTGCCAAGGGTGTGCGTGCGTGTGCGCGTGTGTGCGAGACGGCGAT
TGTTGTGACGGCAGGCTGCCTGTGCTGACCGTACCCTATGGCCTAGTAGG
GGAGGGGCCCCCCCACCCCGACTCTCAGGAGTCGGGATGGGGGGAGCATG
GACTTGTCCATCCCTCCGCTTCTGGCGGGGGGGCTAGCCACCCCCTCCCG
CCCTGGCTCTGCCAGGGGAGGGAGGGGTCCTGCTCCGTCTGGACCGAGGC
GCATGGTCAATGGTCTCGGGACTACGGCAAGCACAACGTGAGTACATATA
TATACATATATACCTGGGTATATATGTGTGTGTGTGTGTGCTGCGGAAGA
TACACGCGGCCAGGTGCGATCCATGTTGCCACTGATGAGGTCACAGCGGT
GGGTGATGGTCGCTCCCCCTCGGCCTTGGCACCGGCCGCGCTCCTGGAGC
GCGCGCTCCTCTTTCATGGACTCGTCATTTGCCGTGGCCAGCTCCGGGTC
CAGGTTGGGATCCACGCCTGCCAAGGGTGTGCGTGCGTGTGCGCGTGTGT
GCGAGACGGCGATTGTTGTGACGGCAGGCTGCCTGTGCTGACCGTACCCT
ATGGCCTAGTAGGGGAGGGGCCCCCCCACCCCGACTCTCAGGAGTCGGGA
TGGGGGGAGCATGGACTTGTCCATCCCTCCGCTTCTGGCGGGGGGGCTAG
CCACCCCCTCCCGCCCTGGCTCTGCCAGGGGAGGGAGGGGTCCTGCTCCG
TCTGGACCGAGGCGCATGGTCAATGGTCTCGGGACTACGGCAAGCACAAC
GTGAGTACATATATATACATATATACCTGGGTATATATGTGTGTGTGTGT
GTGCTGCGGAAGATACACGCGGCCAGGTGCGATCCATGTTGCCACTGATG
AGGTCACAGCGGTGGGTGATGGTCGC
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