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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 940 |
| Cds size | 645 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815637.6350312-UTR-S-ischiensis_contig12:3297364..3297588 | 1622815637.6350312-UTR-S-ischiensis_contig12:3297364..3297588 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 3297365..3297588 - |
| 1695739819.5151196-UTR-S-ischiensis_contig12:3297364..3297588 | 1695739819.5151196-UTR-S-ischiensis_contig12:3297364..3297588 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 3297365..3297588 - |
| 1622815637.6468785-UTR-S-ischiensis_contig12:3299568..3299579 | 1622815637.6468785-UTR-S-ischiensis_contig12:3299568..3299579 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 3299569..3299579 - |
| 1695739819.523445-UTR-S-ischiensis_contig12:3299568..3299579 | 1695739819.523445-UTR-S-ischiensis_contig12:3299568..3299579 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 3299569..3299579 - |
| 1622815637.6892004-UTR-S-ischiensis_contig12:3303170..3303189 | 1622815637.6892004-UTR-S-ischiensis_contig12:3303170..3303189 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 3303171..3303189 - |
| 1695739819.5489478-UTR-S-ischiensis_contig12:3303170..3303189 | 1695739819.5489478-UTR-S-ischiensis_contig12:3303170..3303189 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 3303171..3303189 - |
| 1622815637.702426-UTR-S-ischiensis_contig12:3303881..3303922 | 1622815637.702426-UTR-S-ischiensis_contig12:3303881..3303922 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 3303882..3303922 - |
| 1695739819.5579858-UTR-S-ischiensis_contig12:3303881..3303922 | 1695739819.5579858-UTR-S-ischiensis_contig12:3303881..3303922 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 3303882..3303922 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815637.6598258-CDS-S-ischiensis_contig12:3299579..3300054 | 1622815637.6598258-CDS-S-ischiensis_contig12:3299579..3300054 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 3299580..3300054 - |
| 1695739819.5318816-CDS-S-ischiensis_contig12:3299579..3300054 | 1695739819.5318816-CDS-S-ischiensis_contig12:3299579..3300054 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 3299580..3300054 - |
| 1622815637.6746078-CDS-S-ischiensis_contig12:3303000..3303170 | 1622815637.6746078-CDS-S-ischiensis_contig12:3303000..3303170 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 3303001..3303170 - |
| 1695739819.5403357-CDS-S-ischiensis_contig12:3303000..3303170 | 1695739819.5403357-CDS-S-ischiensis_contig12:3303000..3303170 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 3303001..3303170 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig12.2787.1 >prot_S-ischiensis_contig12.2787.1 ID=prot_S-ischiensis_contig12.2787.1|Name=mRNA_S-ischiensis_contig12.2787.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=215bp
MRRHPRRQQQPPQERQGAMAMARPTGQGTMRRLPCSWPWPCPWRMGAPTQ
RSPGPCRLSRDGGGGAGGGAQGPQPDEHKSPPVATNGAKPALRRKRDRKG
NGGGGAGGRVQGPPPEEHAFPPGATNQDKAKLRRKWLEEERAAKLAKEQA
EKAERAKCFKEEQRRRANELRAKAKKTKHHQQEVKAQGEADKAEDLRRKV
KQRAGRSGGGGSAR* back to topmRNA from alignment at S-ischiensis_contig12:3297365..3303922- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig12.2787.1 ID=mRNA_S-ischiensis_contig12.2787.1|Name=mRNA_S-ischiensis_contig12.2787.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6558bp|location=Sequence derived from alignment at S-ischiensis_contig12:3297365..3303922- (Schizocladia ischiensis KU_0333)
AGGGCGGTGCGGCGGAGGCCAAGAGTTCCGACGCCGTGCAGGTGCGCAAG
GATTTTGTGTACATATGACTGGTCCGTCTCGACAGACGTGCATGGTCAAT
GGTCTCGGGACTACAGCAAGCACCACGTGAGTAGATATATGTATATGTAA
GCGTGCACAAACGGGCAAGGCCCACGGGCGGAGGCACAAAGTGATGTTTT
TCTCTTGTGCTGTTTGTCTGTTGTGGAAGCGGTCAATGATATCGGGACTA
CTTACGGCAAGCACAAGGTGAGTGCGTATGGTATACTTGAAAGGGTATGG
AGCAAGTATGTACTCAAGTAGGAGTAGAGCTCTTTGCTTCACCAACGAAA
AGATGCACTGCCTTCTTTGATAGCAACAGTGACGGGATTCGGGGCGGGGC
GAGACGAAAAAGCAACGGCTCTACCCTCACGTTTGCCCCCCACGAAACGG
TAGCGCAGGTATCAGTATAGCTCTCCCGTTGACTTGGCGCTGCCCCCGCC
CGGCACGCGGCTCGCCCCGTGCCGAGCACAACACGTAGGAGCCGTTCTGC
AATACATCTTGGCAAAGTGCTACGTACACTACTACTTTACGAGTACTCGT
ACTATACCCTCAAGTGTGTACTGTACTCACGCTTAGCTTGCTGTGCATAG
TCTCGAGACCATTGACCAACGCGCCTGGACCGAGACGTGGCTATTACTCA
GGCGCTCGTCTTGTGAAATCCCCTCCCCCTCAGGTGGACACGTCCGCGGC
GGATGCGGCGACACCCGCGGCGGCAGCAGCAGCCGCCGCAGGAGCGGCAG
GGGGCGATGGCGATGGCGAGGCCGACGGGGCAGGGGACGATGAGGAGGCT
ACCCTGCAGCTGGCCTTGGCCATGTCCATGGAGGATGGGGGCGCCGACGC
AGAGGAGTCCGGGGCCATGTCGGTGAGGAAGGAGGGTATACATACACTTC
GAAGTATATATATATATAATATGTACTCACGTGGTGCTTGCCGTAGTCCC
GAGACCATTGACCCCGCGCCTCGTGCGAGGCGGAGCAGGTACTACATATA
TATATATATATTATATGACTCACGTGGTGCTTGCCGTAGTCCCGAGACCA
TTGACTACGCGCCTCGGTCGAGACGGAGCACAGTACTATAAATATATGTA
CTCACGTGGTGTTTGCCGTAGTCCCGAGACCATTGACCCCACGCCTTCGT
CGAGACGGACTACTTCGAATTTATATATGTACTCACGTTGTGCTTGCTGT
AGTCCCGAGAGCATTGACAGTGCTGTGCGTGCAACCATCGTCTTGTTCCG
TTTTATCCCTTTGAGGACGGCGATACGTTGGTTGCTCACTACAGTACAGC
ACCCGTACATACAGTAGCTCCCGCTTGGAAGTACTTCCAAGCATGTTTCG
GCGTGCTGTCTGTCGTCCTCAGAGGGGAAATGGGTAGGCACTTCCACGTA
CCTGAGGAGGCTGTGTCGCTCACGTTGTATTTACGACGTTCCAGCATGTG
TATGTGTACTACGGAAGTACCTCCAATTACGTGGGTACTGTACTGTACCA
CGACCCCCGGTCGATACTATTTACAGCGCCAAAAATACCGACCTGGTCGT
TATCCAGGGGGGGGGTCAGTGCGTGTGTACTCATGTTCGGACGAGCTTCC
TCGTCTCTGTGCATGCCCTCGACCCGAACGATCCTCGTTTTTGCTCCTTC
TCGCGGGATCGCTGGCCAGCTGTCGCTCTCGCCATTGCAGTACACAAATT
TTATCCGGCGTTGTCGCTCTCGACCTTAACCAATGAACAGCCGGAACGAC
CAGAAACAGGACCCTAGAACCCAGGGTGCGGAAGGAGACTTTTGGTGCCG
GCATGCAAGGAAAGGCGCCAAAAAACTGGGCGCTTTTCATCGGGATACCA
AAAACGCGGGTTGAAGCTCGATATGTACCGCTGACGACTTTGTGGTTCCC
GTTGGCCTTATGTTTTCTAGGCTTGTGTACCGCTGAAAAGCCCGTCGGCT
TTCCCTGTTTTTGGCCGGACCAAATGGCGTGAAGTTTCAAGTACGTTTTT
TTCCGGCGTCCCATCCCTGAGCCCGTGCCGCCGTCCTCGTGGTCCTGCTT
TGCCAGTCCTGTGCCCTTTTGCGTGACCCGTGGATACGTATGGGAAATTG
CTCAAGTGTATGTTTGCACTTTCCAGGGGGTCGAAGGTTTAACAAGTTAA
CAACCCTCGCACTGAGCACCGGACATAGGTGCAAAGGTTTTTAGTGCTGT
AGCCTTTTTGCTTGCCCCAGGCGGACGCATGGCAGGGATTCACTTGAGTG
TGTGTGGGCACCTTCCCGGGGGTCAAACGGTTTAGAACAAGCCTCACACA
CAAAAGGGCGACGAAAAGGTTTACCGTACAGTAGCTCGTGCCGTTTTGCA
GCGTGAACCCCGTTGTTACACACGGAATGATAGGGGTTTACTGCGTGGGT
ACGTCTTTCAGGGCTCAAAGGGCTAGCAACCCTCGCACCAAACAGAGGCG
GCAAAAGGGGTGATCTATATATGTGTGTGTGTGTGTGTACTCACGTGGTG
CTTGCTGTAGTCCCGAGACCATTGACCACGCACCTCTGGTGAGACAGAGC
AGGAATATACGCACGACATGGTACTTGTACTAGAGTTAGGCGCACATGAC
CGTGGTAGGGATTTACTTTAGTACTTCGAAGTATGTGTGCAGCAACTTCC
CGGGGGCCAAAGGGTTAACAATCCCACACCAAACAGAGGCAGCAATCAAC
TTAGGGAAAGCTCTTTCGCCCCTTGTGTGCACAGAACAATAGGGGATTTA
GTGCACGTGCCCACCTGCCTGGTTGGTTTCCAAAGGGTTTAGAGCAGACC
AGTCCCCGGACGCCTGATTCCAAGCAGTCCACATACAGTAGTGCCTTTTA
TTGAACCCTCAATGGGCTTTTATCAGAGGGATGGCTATCACATACCAGTA
CCGCACATCAGAGTATACGAGTACTGTAGCACTGTGGAAATTGTACTTGT
AGATGTGGCTGTGCGGGCATGCTCTGGCAGCCCTGGGCCCTAGACTACGG
GAGTACAGTAGTACTACTACTAGTAGACCAGTGTACTGTAGTAGTACTAC
TAGTAGTAGACCAGTGTACTGTCTGATGGAAGAATTTCCACATTGGAGCT
GCCCTCGACACGAACGCAAGCAACAACTCATGGGTACGGTCCACCCCCAC
CCCGCCCCATCATGCAGTGTAGGCCGCCTTCGCCGCCTATTTTTCTGCTC
CAGTCAGCGCTCTCACTTGAACTGCCTCACATATTCAACAGCTGTGTACT
GTAGTTAAGTATGCCCCGCCCCGCTTCCTCCCCGTCCGAAGTGCCTTCGG
CTTTGCAGGAAAGGGTGGCCATTGCCACTGTTGAGGTCATTGCTGTAGTG
GCGAGGACCGCACCTCACTTGGTATTTATTGTACTTAAGAGCATACTCAA
GTGCTCGTAGTACTGCTGTCGTACCGCAGTACTTAGCTTACTGTACCATC
GTTTGTCTTGTTCTTCGAAGTACTTTGTGGTACCTGTGCTTGGGGGTAAA
TACTTGAACTAGTACTAGTACTCGTACCGCAGTACTGTAGCTTATCATCG
CTTGCTTGGTGCTTTGAGACTTGTATGTAGCACTTGGAAGTGCTTCCAAG
TGTTATACGACAGTACTGTACTGCAGTATTAACAGGAACAACACGGGGTG
AGGTGCGGGCCACGTCACTAGAGACCTCGGCAGAGGCTTTACAGTACAAT
CGCTAACTTGGTGCTTGCTTCAACTGCCCTCCCCCTCCCCCTCCCCTCGC
GGGCCTGGCCCTGCTGCACCCCAGACGGACCCCTCCCTACCCCTCCCGCC
CCCGCCCTCCTCCCCCAGGCTCAGCCGCGACGGCGGTGGCGGCGCTGGTG
GCGGGGCGCAGGGGCCACAGCCGGACGAACACAAATCCCCCCCCGTTGCC
ACCAACGGCGCCAAGCCCGCCCTGCGCCGCAAGCGGGACCGCAAGGGGAA
CGGCGGTGGCGGCGCTGGTGGCAGGGTGCAGGGCCCACCGCCGGAGGAAC
ACGCGTTCCCCCCCGGTGCTACCAACCAAGACAAGGCCAAGCTGCGCCGC
AAGTGGCTAGAAGAGGAACGGGCGGCCAAGCTCGCCAAGGAGCAGGCCGA
GAAGGCGGAGAGGGCCAAATGCTTCAAGGAGGAGCAACGGCGCCGCGCCA
ACGAACTCCGGGCGAAGGCCAAGAAGACCAAGCACCATCAGCAAGAGGTC
AAGGCCCAGGGAGAGGCCGACAAGGCTGAGGACCTTCGGCGAAAGGTCAA
GCAACGGGCGGGGCGGTCAGGCGGGGGGGGCTCGGCCCGGTGAAGGCGAG
TGAGGTGAGGGTTAATCCTTTTACCCAGGATAAATTGGACTTACACACTA
AAACCCTATGACTATATGGACCCCAGGGGTAATAAAAGGGTTCATGCATC
GGCGTCTGTGGCCCGCAGAGAGTAGAGCTCGGCGGCTACTACTGTGCGAC
TCGAGTATCGCAGCAGTGCCCCTGCACTGTGCTGCTACACGCGTAGAGTA
CTCGAGTATCTGGCATTGTACTTACAGTTGCAATGTACTCGTACTGACTG
TAGTACTTCAGTATTGCTGATTTTCCCCCCGCCCTCAGCTTTGCGAGAAA
GGGCGGCCTTCCCAGTACAGTACCAGTGTTGAGGTCGTTGACGGTACAGT
AGTGGCGTGGACCGTTCCTTATGTGGTGATTTCTTTGGGCGTAAAAACCT
ACTTCTGAAGCGCATGCAGTAGTACTCGCTTTTTTGTTCGTTCAACCTCA
CTTGGCGTACGAGAGTTCTATCCAATGGGTGCTACAGTACTCATAGCACC
TACCTCGTAGTACAGGAGCATTAGACAAGTGGTGTCCATGGCACTACTAT
GATGAAAATGATCCCCCCCACCCCAGTGGAAGTTCAACAGTGGGGTTCCT
TCCCTCGGCAGTCGTATACGTAATTTCACGATGACGAAGTGCTTGTACCA
TAGCCTACCAAGTCTCCGCCAAGCCCAGGGGAGTTTAGGGGGCACTTGCC
TGCTCCGCCTCGAACAAGGCGCGGGGTCAATGGTCTCGGGACTACGGCAA
GCACCACGTGAGTACATAAATACTTGTCAGTGTGGGTGGCCCACACCGAC
TATCTATGGCTACTTGGCATTTTGCCACAGTGCTGCCGTACTGTTAGCAT
ACGACAGCTGTTTCTACCTACTGACTGCAGTACTGTAGGTACTCGCAAGA
CTTCGGGCTTCGTTACTCGTACGACAATGTGCTACTTCATGGTGCTTACA
GTACATAGAACTGCAGACGAGTATGTGCAGCAGTACAGTACAGCAGTACG
GTACTGGACAGTACAGTAGAACACCACTATACTGGTACTCGAGTACTATT
GTAAGTAGGCTATACATGTACTCGTATTCACATTGAGCTGGTCGTGCTCC
TGAGACAATTGACCATGCGCCTAGTCCGAGACTAGTCCGAGACAGAGCGA
CCACTGCTACCTCTGCATGTTGCTACTGCTACTGCTACTACTGGCCTCGT
ACTGCAGTGTTCCTACTACAGTACTGCAGTCCTGTAGAGAATTCACATGT
ACTACTACTGGACTGTACGGCACCGTACTGTACTACTACAAGAAGTACAG
CAGGTCTCTTGTATTACTTCAAAGTGCTTGAGCACTGCTCAACTCGTACT
TCCCAGGACTATACTGCTACTGACTACTGTAGTGTATATACATACTTCGA
GCAATTGCAAAGTACTACTACTGTAAAATCACCACCACCACTACTTTGCC
GCCAGCGACCCGGCCCTTCCTCCTGCCCCCCCTCCCCTCCCCTGCCCTGC
CGTGCCGAACAATTCAAGTACATACCCACGTCCATCGAAGTACTTCGAAG
TAGCTCGTACAGTACAGTACAGTAGTGCATTCACGTACTCGAGTGCAATA
CTCCTGTACTAGATGTGCCTCCAGTGACATGGCCTGCACCCCGCCCTGTG
TTTTATCTTCCTGTCCATATTGTATTGACTACTACTGTAGTACGAGTACT
ACCTTTGCTATAGGTGCGGTAGTATATAACTACAGTGTCACAGAAAGGGC
TGGTGCTTGCTTTCCCCTCAGACAAGTAGCACTACTACCTACTACTACTA
CTACTACTACTACTACTACAAGCTATAAGGAAGGGCCACTGCTGAGGTCT
CTAGGGACGTGGCCCGCACCTCGCCCTGTGGTGTTCGTGTTAGTACTACT
ACTACTGCTACTACTACTACTGCTACTACTCTACAGTACTTAGTAGTACT
TTGGTGCGCTTCCACCTGCGGTTTTTGCTCGCAGGGCCCCCCGGACCAGC
AAGATTCCACCCTTCTCGACCTTCTGAAGACCTGTGGGTCCGCTGAGGGT
GGGTGAAAAGAGCTCAGGGCCCGGGCGGGAGGCGTTTGTGCAGGGGCCGT
GCCGTGAAGAGGTTTCTGCGGAGGCCTGTGCTTGTATTCCCGTGCGTAGT
TGTTGCTAGGGCGGTGGGACCGACGACACTGCTGAGCCGGCTGCGACCGG
GGGATGAC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig12:3297365..3303922- >mRNA_S-ischiensis_contig12.2787.1 ID=mRNA_S-ischiensis_contig12.2787.1|Name=mRNA_S-ischiensis_contig12.2787.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1290bp|location=Sequence derived from alignment at S-ischiensis_contig12:3297365..3303922- (Schizocladia ischiensis KU_0333)
ATGCGGCGACACCCGCGGCGGCAGCAGCAGCCGCCGCAGGAGCGGCAGGG
GGCGATGGCGATGGCGAGGCCGACGGGGCAGGGGACGATGAGGAGGCTAC
CCTGCAGCTGGCCTTGGCCATGTCCATGGAGGATGGGGGCGCCGACGCAG
AGGAGTCCGGGGCCATGTCGATGCGGCGACACCCGCGGCGGCAGCAGCAG
CCGCCGCAGGAGCGGCAGGGGGCGATGGCGATGGCGAGGCCGACGGGGCA
GGGGACGATGAGGAGGCTACCCTGCAGCTGGCCTTGGCCATGTCCATGGA
GGATGGGGGCGCCGACGCAGAGGAGTCCGGGGCCATGTCGGCTCAGCCGC
GACGGCGGTGGCGGCGCTGGTGGCGGGGCGCAGGGGCCACAGCCGGACGA
ACACAAATCCCCCCCCGTTGCCACCAACGGCGCCAAGCCCGCCCTGCGCC
GCAAGCGGGACCGCAAGGGGAACGGCGGTGGCGGCGCTGGTGGCAGGGTG
CAGGGCCCACCGCCGGAGGAACACGCGTTCCCCCCCGGTGCTACCAACCA
AGACAAGGCCAAGCTGCGCCGCAAGTGGCTAGAAGAGGAACGGGCGGCCA
AGCTCGCCAAGGAGCAGGCCGAGAAGGCGGAGAGGGCCAAATGCTTCAAG
GAGGAGCAACGGCGCCGCGCCAACGAACTCCGGGCGAAGGCCAAGAAGAC
CAAGCACCATCAGCAAGAGGTCAAGGCCCAGGGAGAGGCCGACAAGGCTG
AGGACCTTCGGCGAAAGGTCAAGCAACGGGCGGGGCGGTCAGGCGGGGGG
GGCTCGGCCCGGTGAGCTCAGCCGCGACGGCGGTGGCGGCGCTGGTGGCG
GGGCGCAGGGGCCACAGCCGGACGAACACAAATCCCCCCCCGTTGCCACC
AACGGCGCCAAGCCCGCCCTGCGCCGCAAGCGGGACCGCAAGGGGAACGG
CGGTGGCGGCGCTGGTGGCAGGGTGCAGGGCCCACCGCCGGAGGAACACG
CGTTCCCCCCCGGTGCTACCAACCAAGACAAGGCCAAGCTGCGCCGCAAG
TGGCTAGAAGAGGAACGGGCGGCCAAGCTCGCCAAGGAGCAGGCCGAGAA
GGCGGAGAGGGCCAAATGCTTCAAGGAGGAGCAACGGCGCCGCGCCAACG
AACTCCGGGCGAAGGCCAAGAAGACCAAGCACCATCAGCAAGAGGTCAAG
GCCCAGGGAGAGGCCGACAAGGCTGAGGACCTTCGGCGAAAGGTCAAGCA
ACGGGCGGGGCGGTCAGGCGGGGGGGGCTCGGCCCGGTGA back to top
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