mRNA_S-ischiensis_contig12.2777.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2777.1
Unique NamemRNA_S-ischiensis_contig12.2777.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:3198407..3201034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size382
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.4121125-CDS-S-ischiensis_contig12:3198407..31987321622815637.4121125-CDS-S-ischiensis_contig12:3198407..3198732Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3198408..3198732 -
1695739819.372412-CDS-S-ischiensis_contig12:3198407..31987321695739819.372412-CDS-S-ischiensis_contig12:3198407..3198732Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3198408..3198732 -
1622815637.426155-CDS-S-ischiensis_contig12:3200978..32010341622815637.426155-CDS-S-ischiensis_contig12:3200978..3201034Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3200979..3201034 -
1695739819.3891065-CDS-S-ischiensis_contig12:3200978..32010341695739819.3891065-CDS-S-ischiensis_contig12:3200978..3201034Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3200979..3201034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2777.1prot_S-ischiensis_contig12.2777.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 3198408..3201034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2777.1

>prot_S-ischiensis_contig12.2777.1 ID=prot_S-ischiensis_contig12.2777.1|Name=mRNA_S-ischiensis_contig12.2777.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
KGITALDETFVLDARDPMSSGCSIPSPAPPQGTFGVDASSPQQHPSPEGS
GPGLGRAHHHRCHPPSPSPSSPFLPAMVPPPSTTSTASPGAAAAATGTCG
GGMGLPFGEAFGVVGLAESPAAGGGGQ
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mRNA from alignment at S-ischiensis_contig12:3198407..3201034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2777.1 ID=mRNA_S-ischiensis_contig12.2777.1|Name=mRNA_S-ischiensis_contig12.2777.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2628bp|location=Sequence derived from alignment at S-ischiensis_contig12:3198407..3201034- (Schizocladia ischiensis KU_0333)
AAGGGCATCACCGCGTTGGACGAGACGTTCGTTCTGGATGCGCGGGACCC
GATGAGGTGAGAATCCCAAGTAGTTGGGGGAATGAGTTTCACGAAGCACA
AGTGGTTAGGAGGATGAGTTTCATGAAACCCAAGTAGTTAGGAAGATGAG
TTTCGTGAAACCCAAGTACTTCTCGAGGCAGTTAGGGGGGTGAGTTTCAT
GAATCCCAAGTAGTTGCGGACGAGACGTTCGTTCTGGATGTGCGGGCCTC
GTTGAGGTGAGAATCCCAAGTATTAACAGGAACAACACGGGGCGAGGTGC
AGGCCACGTCACCAGAGACCTCAGCAGTGGCCCTTCCTTAGCTCGCCGGG
GGAAATTTGTGCGGGGAAAGTGGGGGGAGTGGGCAGGGAGGAGGGGGAGG
AGGAGGAGGAGGGGAGAGGAAGGAGAGGAATGGGATGGGGTGCGGGTGTC
GGGATGAGTTTCACGAGGTACAAGTAGTTCGGAGGATGACTTTCGTGAAA
CCCAAGTAGTTAGGATGGTGAGTTTCATGAAACCCAAGTAATTAGAGGGT
TAGTTTCATGAAACCCAAGTGGTTCGGGGAATGAGTTTCACGAAGCACAA
GTAGCTAGGAGGATGAGTTTCGTGAAACCCGAGTAGTTGGGGGATGAGTT
TCATGAGTCCCAAGTACTTCCTCCGGGGCGTATTATTAGACCTACATTTT
GGAGACCACCGTAGGCTCACGAAAAATCAAAGTTGAGATTTCCTGTTTTA
TCTGTGTTTTATTAAGTGTTAAAGTGTCTGCGGTTAAAATCTCAAAGCAA
ACGGAGCCCTACAGCCGGGGCTAGCCCTGCGCCAGCAACGCCTCCAAATC
ACGCATTCCGGGTGCCCGTTTGGGGCCTCTGAGGGGCATTTTCTTGTCAT
TGTGCTGTGCGGAGTCATTGCTGTGGGGGAATATCCATAGGCATTGCTTG
ACAATGGCCCCGCACTAGCCCAAGCCCTTCCTCCACTTCATCAGGGTCTT
TCTTGCCCCTTTTTTGGCCTATTTTGGCAGTGGCCCACCTGGGCCGGAAC
GGGTGTTTTTGCTGGGATGCGCCCAAAGTTCTTTGTATATGGCGCCTCGA
GGTGCTTCCGACGGGGCCCACTATGGCTCACGCACCCTGGCGGACAAGCC
GAGAAGCGGGTAAGACCCCCGGTGCGGCGTCACGAGCGCTTGGCGACGTT
CTCGCTGACCCCGACCCGCTCCAGCGGTATCGGAACAGAGCCATGTTGTC
CCCTTCACGCGGCCCCGGAAGCCTCAAAGGCACACGCGGCGGTCGTAGCC
CGCACCTCGGGGGTCATGTCCCTTGCGTTGCCCATCCTACGACCCTGGCA
TGCGACCTGTCTCGCAAAATCGCTCGCCGCGGTCGACCCTCTCGCATCTC
TGCGCGCACGCCAAAAAGCCGTTTCACCTTCGAACAGGGGGGGGGTTCTG
AGCCCCTTTTCTCGCTCCCCCGGCTTCGAGACCACCTAACTCGAGCTACA
GACCTCTGTCGACCGCGCTGTTTGGCGCGATGGGGAGTTCAAGAGTGAGG
CTTTACGCCGATATATGGTTATATATACCGTTCGGCGCTATAGCGCCAAG
TCTGAGTCCGTCCAAAAGTAGGCCTATTAGTACGCCCCGGAGGAAGGAGT
TGCGGACGAGACATCCGTTCTCGACGCGCGGGCCTCATTGTGGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGACGGACAGACAGACAGACGAACAGATTACAATCGCCGCCGTCT
TGTGGGTCGGGGCGAGTTTGTTTGCGTGTTTGCGTGTTTCGCCCCCCTCG
AGGTGAGACTCTAATACCGCACTGAATATATTTGGAGTAAAGTTGGGCGG
TGATTCATATCAACTGTAACAAGGTGCAATCGCACGTCTATGAGACTGAG
TGTTCTCGTATCAGTGGTTATCGCGTTTAAGAATCGAGTGTTCTCGTATT
AGTGGAGAGAGACGGCGATCGATCGCCGCCGTCTTGTGGGCGCGAGCCGC
TTGTTTGCGTGTGTTTGAAGCGTGCCCGCCCCTTGAGATGAGACTCTAGT
ATAATACTGCATGGAATGTACGAGTATGTAGAGTAAGGTTAGGCCCTGTC
TGTCTACGATCCCCCGATTTTATGGGATGTTTGGAGTTTTGTACTTGTAG
GCCGATAATAGGACGGCGCAATACGTCCTCCCCCATACTCCACTCCGTTT
CATGTCTGTCTGTCTGCCCGTCTGTCTGTATGTACATCACCCCCGGCAGC
AGCAGCGGCTGCAGCATTCCCTCCCCAGCACCCCCCCAGGGTACCTTCGG
AGTGGACGCCTCCTCGCCCCAACAACACCCCAGCCCGGAAGGCAGCGGGC
CTGGCCTCGGCAGGGCACACCACCACCGCTGCCATCCGCCCTCGCCCTCC
CCCTCCTCCCCATTCCTCCCCGCCATGGTCCCCCCTCCTTCCACTACAAG
TACCGCCTCTCCAGGCGCGGCTGCCGCTGCCACGGGCACGTGTGGAGGGG
GAATGGGTTTGCCGTTTGGGGAGGCGTTTGGCGTGGTGGGGCTGGCAGAA
TCTCCGGCGGCGGGTGGCGGCGGGCAAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:3198407..3201034-

>mRNA_S-ischiensis_contig12.2777.1 ID=mRNA_S-ischiensis_contig12.2777.1|Name=mRNA_S-ischiensis_contig12.2777.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig12:3198407..3201034- (Schizocladia ischiensis KU_0333)
AAGGGCATCACCGCGTTGGACGAGACGTTCGTTCTGGATGCGCGGGACCC
GATGAGAAGGGCATCACCGCGTTGGACGAGACGTTCGTTCTGGATGCGCG
GGACCCGATGAGCAGCGGCTGCAGCATTCCCTCCCCAGCACCCCCCCAGG
GTACCTTCGGAGTGGACGCCTCCTCGCCCCAACAACACCCCAGCCCGGAA
GGCAGCGGGCCTGGCCTCGGCAGGGCACACCACCACCGCTGCCATCCGCC
CTCGCCCTCCCCCTCCTCCCCATTCCTCCCCGCCATGGTCCCCCCTCCTT
CCACTACAAGTACCGCCTCTCCAGGCGCGGCTGCCGCTGCCACGGGCACG
TGTGGAGGGGGAATGGGTTTGCCGTTTGGGGAGGCGTTTGGCGTGGTGGG
GCTGGCAGAATCTCCGGCGGCGGGTGGCGGCGGGCAACAGCGGCTGCAGC
ATTCCCTCCCCAGCACCCCCCCAGGGTACCTTCGGAGTGGACGCCTCCTC
GCCCCAACAACACCCCAGCCCGGAAGGCAGCGGGCCTGGCCTCGGCAGGG
CACACCACCACCGCTGCCATCCGCCCTCGCCCTCCCCCTCCTCCCCATTC
CTCCCCGCCATGGTCCCCCCTCCTTCCACTACAAGTACCGCCTCTCCAGG
CGCGGCTGCCGCTGCCACGGGCACGTGTGGAGGGGGAATGGGTTTGCCGT
TTGGGGAGGCGTTTGGCGTGGTGGGGCTGGCAGAATCTCCGGCGGCGGGT
GGCGGCGGGCAA
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