mRNA_S-ischiensis_contig12.2773.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2773.1
Unique NamemRNA_S-ischiensis_contig12.2773.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:3162369..3163223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.11624-CDS-S-ischiensis_contig12:3162368..31624791622815637.11624-CDS-S-ischiensis_contig12:3162368..3162479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3162369..3162479 +
1695739819.2500908-CDS-S-ischiensis_contig12:3162368..31624791695739819.2500908-CDS-S-ischiensis_contig12:3162368..3162479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3162369..3162479 +
1622815637.1336129-CDS-S-ischiensis_contig12:3163129..31632221622815637.1336129-CDS-S-ischiensis_contig12:3163129..3163222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3163130..3163222 +
1695739819.263639-CDS-S-ischiensis_contig12:3163129..31632221695739819.263639-CDS-S-ischiensis_contig12:3163129..3163222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3163130..3163222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2773.1prot_S-ischiensis_contig12.2773.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 3162369..3163222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2773.1

>prot_S-ischiensis_contig12.2773.1 ID=prot_S-ischiensis_contig12.2773.1|Name=mRNA_S-ischiensis_contig12.2773.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=68bp
AAPKIGGSGEGAGPAKDPSDAGGSNASHAGTAAKDVQEGLVKEATLLLSS
KRYRSGGSKNMKAGSACL
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mRNA from alignment at S-ischiensis_contig12:3162369..3163223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2773.1 ID=mRNA_S-ischiensis_contig12.2773.1|Name=mRNA_S-ischiensis_contig12.2773.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=855bp|location=Sequence derived from alignment at S-ischiensis_contig12:3162369..3163223+ (Schizocladia ischiensis KU_0333)
GCCGCCCCCAAGATCGGCGGCTCTGGGGAGGGCGCCGGTCCCGCGAAAGA
CCCTTCGGACGCTGGTGGCAGCAACGCCTCCCATGCCGGCACCGCGGCCA
AGGATGTACAGGTGCTGTGCTGTACTTTTGCTGGGAGTGGTCTATACGGA
AACCAAGTACGTACTCTACAATTGTAGTACTTTCAAGTATATAGTCTGAG
ACCCGCAGGACACTAACGGCGGCAACGCCTCCCATGCTGGCACCGCGGCC
AAGGATGTACAGGTGCTGTCCTGTACTTTTACCGGGTGCTGACTGTACTG
AAACTGCTGTATGTACGTACTCTACAATTGTAGTACTTTCAAGTACATAG
TCTGAGACCCGCAGGACGCTGGCGGCGGCAACGCCTCCCATGCTGGCACC
GCGGCCAAGGATGTGCAGGTGCGGTTCTGTACTTTTACCGGGTGCTGACT
GCACTGAAACTGCTGTACTGTATGTGCGTACAATTGTAGTACGAGTATAT
GGCCTGCCATGGCATTCCCTCTGCTTGTCATTGTGCTCGTACTGTGCTGG
TCAATGGTCTTGGGACTGCGGCAAGCACAATGTGAGTACATGTACTTCGA
AGTATACACTGTGCTGGAGTAATCGCCGACCAACGAGTGCTCGGCCAGGG
AGCATTGCCCCGTGGCGATTTTTCCGTTGATGAAACTGGTTGTCATGAAT
CCGCTCGTCTACTGCTGTGCGTGGGCGCTGCGAACTGTCCCGACTCGTAA
TGCCGACTCAGGAGGGCCTGGTTAAGGAGGCAACCCTGCTGCTCTCCAGC
AAGCGCTACCGCTCGGGGGGGAGCAAGAATATGAAGGCCGGGTCGGCTTG
CCTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:3162369..3163223+

>mRNA_S-ischiensis_contig12.2773.1 ID=mRNA_S-ischiensis_contig12.2773.1|Name=mRNA_S-ischiensis_contig12.2773.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=408bp|location=Sequence derived from alignment at S-ischiensis_contig12:3162369..3163223+ (Schizocladia ischiensis KU_0333)
GCCGCCCCCAAGATCGGCGGCTCTGGGGAGGGCGCCGGTCCCGCGAAAGA
CCCTTCGGACGCTGGTGGCAGCAACGCCTCCCATGCCGGCACCGCGGCCA
AGGATGTACAGGCCGCCCCCAAGATCGGCGGCTCTGGGGAGGGCGCCGGT
CCCGCGAAAGACCCTTCGGACGCTGGTGGCAGCAACGCCTCCCATGCCGG
CACCGCGGCCAAGGATGTACAGGAGGGCCTGGTTAAGGAGGCAACCCTGC
TGCTCTCCAGCAAGCGCTACCGCTCGGGGGGGAGCAAGAATATGAAGGCC
GGGTCGGCTTGCCTGGAGGGCCTGGTTAAGGAGGCAACCCTGCTGCTCTC
CAGCAAGCGCTACCGCTCGGGGGGGAGCAAGAATATGAAGGCCGGGTCGG
CTTGCCTG
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