mRNA_S-ischiensis_contig12.2772.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2772.1
Unique NamemRNA_S-ischiensis_contig12.2772.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:3155512..3158474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTubby C-terminal-like domain
Ec32 orthologEc-14_001300.1
Exons3
Model size439
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2772.1prot_S-ischiensis_contig12.2772.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 3155512..3158473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.0457685-CDS-S-ischiensis_contig12:3155511..31556641622815637.0457685-CDS-S-ischiensis_contig12:3155511..3155664Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3155512..3155664 +
1695739819.2247753-CDS-S-ischiensis_contig12:3155511..31556641695739819.2247753-CDS-S-ischiensis_contig12:3155511..3155664Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3155512..3155664 +
1622815637.0588949-CDS-S-ischiensis_contig12:3155852..31560161622815637.0588949-CDS-S-ischiensis_contig12:3155852..3156016Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3155853..3156016 +
1695739819.2328305-CDS-S-ischiensis_contig12:3155852..31560161695739819.2328305-CDS-S-ischiensis_contig12:3155852..3156016Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3155853..3156016 +
1622815637.073727-CDS-S-ischiensis_contig12:3158352..31584731622815637.073727-CDS-S-ischiensis_contig12:3158352..3158473Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3158353..3158473 +
1695739819.2414353-CDS-S-ischiensis_contig12:3158352..31584731695739819.2414353-CDS-S-ischiensis_contig12:3158352..3158473Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3158353..3158473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2772.1

>prot_S-ischiensis_contig12.2772.1 ID=prot_S-ischiensis_contig12.2772.1|Name=mRNA_S-ischiensis_contig12.2772.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=146bp
VWHRPGQRAPGSTSGCACRAMSKEQGASGRGKSDPHSLRGGIAKLKDLER
HNGDALEDTAAVAGVLQALIERLSMGSLSFADRAELAGWLQRNRSAVLSR
HADKCERLERRLGGSFLPGISPLGPGAWTNSVGIRFYPGHPEAHEG
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mRNA from alignment at S-ischiensis_contig12:3155512..3158474+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2772.1 ID=mRNA_S-ischiensis_contig12.2772.1|Name=mRNA_S-ischiensis_contig12.2772.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2963bp|location=Sequence derived from alignment at S-ischiensis_contig12:3155512..3158474+ (Schizocladia ischiensis KU_0333)
GTTTGGCACCGCCCGGGACAGCGGGCGCCTGGATCGACCTCGGGTTGTGC
CTGTAGGGCCATGTCAAAAGAACAGGGGGCCTCCGGCCGGGGCAAGAGCG
ACCCCCACAGCCTGCGCGGTGGCATTGCCAAGCTCAAGGACCTTGAACGC
CACGTAAGTGTTGCAATTATGCAGCTGCGCGGACATGGCCTTCCTAGAGC
TCTGAGGGAACCCCCCCACGCCAGCCCCATGGCCTCCCTAGTGCTTCCAG
AGCGTCTACTGGACAGTGTGTGCTCTGAGGCAGGTAGCTGCGATCTTGAA
TGTTCTAACCACACCAGCGTGCCGCTGCTCTGGCGTTTCAGAATGGGGAT
GCCCTTGAAGACACAGCAGCGGTGGCGGGTGTCCTGCAGGCGTTAATTGA
GCGCTTGTCAATGGGCTCACTGAGCTTTGCTGACAGGGCAGAGCTGGCTG
GCTGGCTTCAACGCAACCGTTCCGCGGTCCTCAGCAGGCACGCGGATAAA
TGCGAGTGAGTTGCTGCGATATCTTTGGGGCTGTTTCAAGTGATCGACAT
GTTTCGCAGGGATCGGTGTGCAATAGTGATCGCTGCTGCTGTGCTTTCCA
TTTTCTCGTTATCCCCAAGCAGTTTTTTTCCGTCGCTGACAGTCCCGCTC
TATTGTGGAGCATGGTACCGCCTTTGCCGGCGCGGCAGTATCTTCTGTAT
CTTCCAGCCATGAGAGGCATAGGCCGAACAGTGGCCGCAAATCTTTTTGC
CGTTTTTGGAAACTGGGAAATACAAGCACCGACCGGTGCCAGGGCGGCAA
GGAATTTTTTAGTGTAAAGATTGGGCTGACCATCACTATGGCTGATGGGC
GTATTCGATGGGCACACTCAGGTAGCCTCGCAGACGGAATGCCATAGTAC
TATAGAGCTCCCTCGAAGACAACCGGTATGGCAAGGATGCCACCAGTACC
ACCACCACCACCACCACCGCCACGACCACCAGCACCACCACCGCTGCACT
CAACACTGTAGCATAGTCTAGTTGCCTTGAGGACTACAGTAGTTCTAAGC
GGTCTGCAGATGTTGCTACTGTACCGACACATCCTGCAAGTGCTGCATTA
ACGTACACAGCCTCGCTTCTTATCAGGGCGGCATCTGACGCACACTACCG
CCGCACAGTACGTGGCACTTTGTCGTGCAGCAGAGGGTTACTGCTTGCGG
TCGTCCAGGTGATGTGATGTGATAAGCACACTCCAAACAGCCGTGCTTTG
ACATGACATCGCATCACGTCACACCACACAAGCAGAGGGCATCGTACAAG
TACGAAGTACTATACTACGGCAGTGCGCGCTGCAGCAGTTTGGGCGGCCT
GCACTGGGGCGCTAGGGGGTACTGCAATGCCCTGCCTGACCCGAGCGCGG
TACTTCCAAGCATTGATTGAACTTCAAAAGAGTACTCTGTACTAATGTGC
TCGTACTACTGTACTACTCGAGTGCTGCTTACTGTACAGCAGTACTTACT
TGAAGTTCAGAACAGTACTCAGTACTAATGCACTACTGTAGTACTCGAGT
ACTAGTTACTACACAGCGGTACTTACGTGAACATCAAAAGCGTGCTCGGT
ACTAATGTACTACTGTAGTACTCGAGTTCTAGTTTCTTCGTACAATACAG
CGGTGCTTACTTGAACATCAAAAGAGTACTCAGTAGTAATGTACTACTGT
AGTACTCGAGTACTACTTACCCTACAGCGGTACTTGCTTGAAGTTCAAAA
GAGTACTCAGTACCAATGTACTACTCTAGCACTCGAGTACTACTTACTAT
ACAGCGGTACTTACTTGAACGTCAAAAGAATACTCAGTACTAAGGTACAA
CTGTAGTACTTCGAAGTACTACTTACCGTACAGCAGTGCTTCTGCAGTAA
CAGGAACAGCACAGGGCGAGGTGCAGGCCACATCACTACAGCAGAGACCT
CAACTGCAGTAAGTACAGCCCCAACTTCGGAGCACTTCTGCTAAAGGCAG
ACGCTCTCACCTATCCCCTTCTGCCAGCTTCGGCTACAGTACAATAGCAC
TCGTGCCATGTAGGAGTGGCACTGCGCCCACGTTGAAGCGTTATTCACGC
GCACACCCCTGCTCTCTACCAACTCTGGGCTACAGCATCGCTCGTAATAC
ATTACAATGGTCTACAGCACCGCTTGTACTACAGTGCAGTGGTCTACAAC
ACCGCTTGTACTACTATGCAGTGGTCTCCAGCACTACAGTGCAGTGGTCT
ACAGTGCGGCTTGTACTACAGTGCAGTGGTACAACTGTAGTAGCAGTGCT
GCCTGCCCCAGCTTTGCAAGCATTGTCGACGTAGCACGCCCTTGCTTATC
CCCTCTCCACCAGCTTTGCCCCGCAGTACAACTGTACTCGTACTGCACTG
TATACACTTTCTCAAGCACCATGCACTCGTCCAGCAGTAGCGACAGCACG
GCCCCGACTTTGAAGCGCCACCAATCGACTCCCTCGTACTGTACTACTCA
CTGTACTGTATACACTCTCAAGCACCATGCACTCTTCCAGCAGTACACCA
CTGCCCCAACTTTGAAGCACCATCAATCGACTCACTCGTACTGTACTACT
CACTGTACACACTTCCTCAAGCACCAAGCACTCTTCCAGCAGGAGCATCA
GCACGGCCCCCCAATTTGAAGCCCGATCGATCAACTCTGCCAGGGGAGGG
AGGGGTCCTGCTCCGTCTCGTCCGAGGCACATGGTCAATTGTCTGGGGAC
TACGGCAAGCACGACATGAGTACATATACTTCGTATATATCAATCGACTC
ACAAGCTCTTGCGTGTCCCCTTCGTACCAACCTCGGCCAAGGCGGTTGGA
GCGTCGACTTGGAGGAAGCTTTCTTCCAGGGATATCTCCGCTCGGCCCGG
GGGCGTGGACCAACTCTGTGGGGATTCGCTTTTACCCTGGACACCCGGAA
GCTCATGAGGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:3155512..3158474+

>mRNA_S-ischiensis_contig12.2772.1 ID=mRNA_S-ischiensis_contig12.2772.1|Name=mRNA_S-ischiensis_contig12.2772.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=876bp|location=Sequence derived from alignment at S-ischiensis_contig12:3155512..3158474+ (Schizocladia ischiensis KU_0333)
GTTTGGCACCGCCCGGGACAGCGGGCGCCTGGATCGACCTCGGGTTGTGC
CTGTAGGGCCATGTCAAAAGAACAGGGGGCCTCCGGCCGGGGCAAGAGCG
ACCCCCACAGCCTGCGCGGTGGCATTGCCAAGCTCAAGGACCTTGAACGC
CACGTTTGGCACCGCCCGGGACAGCGGGCGCCTGGATCGACCTCGGGTTG
TGCCTGTAGGGCCATGTCAAAAGAACAGGGGGCCTCCGGCCGGGGCAAGA
GCGACCCCCACAGCCTGCGCGGTGGCATTGCCAAGCTCAAGGACCTTGAA
CGCCACAATGGGGATGCCCTTGAAGACACAGCAGCGGTGGCGGGTGTCCT
GCAGGCGTTAATTGAGCGCTTGTCAATGGGCTCACTGAGCTTTGCTGACA
GGGCAGAGCTGGCTGGCTGGCTTCAACGCAACCGTTCCGCGGTCCTCAGC
AGGCACGCGGATAAATGCGAAATGGGGATGCCCTTGAAGACACAGCAGCG
GTGGCGGGTGTCCTGCAGGCGTTAATTGAGCGCTTGTCAATGGGCTCACT
GAGCTTTGCTGACAGGGCAGAGCTGGCTGGCTGGCTTCAACGCAACCGTT
CCGCGGTCCTCAGCAGGCACGCGGATAAATGCGAGCGGTTGGAGCGTCGA
CTTGGAGGAAGCTTTCTTCCAGGGATATCTCCGCTCGGCCCGGGGGCGTG
GACCAACTCTGTGGGGATTCGCTTTTACCCTGGACACCCGGAAGCTCATG
AGGGGGCGGTTGGAGCGTCGACTTGGAGGAAGCTTTCTTCCAGGGATATC
TCCGCTCGGCCCGGGGGCGTGGACCAACTCTGTGGGGATTCGCTTTTACC
CTGGACACCCGGAAGCTCATGAGGGG
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