mRNA_S-ischiensis_contig12.2766.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2766.1
Unique NamemRNA_S-ischiensis_contig12.2766.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:3129634..3133547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.853159-CDS-S-ischiensis_contig12:3129633..31297091622815636.853159-CDS-S-ischiensis_contig12:3129633..3129709Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3129634..3129709 -
1695739819.1381023-CDS-S-ischiensis_contig12:3129633..31297091695739819.1381023-CDS-S-ischiensis_contig12:3129633..3129709Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3129634..3129709 -
1622815636.8659787-CDS-S-ischiensis_contig12:3133362..31335471622815636.8659787-CDS-S-ischiensis_contig12:3133362..3133547Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3133363..3133547 -
1695739819.148681-CDS-S-ischiensis_contig12:3133362..31335471695739819.148681-CDS-S-ischiensis_contig12:3133362..3133547Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 3133363..3133547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2766.1prot_S-ischiensis_contig12.2766.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 3129634..3133547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2766.1

>prot_S-ischiensis_contig12.2766.1 ID=prot_S-ischiensis_contig12.2766.1|Name=mRNA_S-ischiensis_contig12.2766.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=87bp
QGIAQALTRANLQREPARTPWWCSRRWEGRGSLLQGSNQACTCSRPTSWQ
RGTPRPRLGVGRRLGRTMPPTTRPPARAKEWQVPFSG
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mRNA from alignment at S-ischiensis_contig12:3129634..3133547-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2766.1 ID=mRNA_S-ischiensis_contig12.2766.1|Name=mRNA_S-ischiensis_contig12.2766.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3914bp|location=Sequence derived from alignment at S-ischiensis_contig12:3129634..3133547- (Schizocladia ischiensis KU_0333)
CAAGGAATTGCACAGGCCCTGACCCGTGCAAATTTGCAGCGAGAGCCTGC
GCGCACACCATGGTGGTGCTCGAGGCGATGGGAGGGGCGTGGGAGTCTGC
TGCAGGGCAGCAACCAAGCATGTACTTGTTCCCGCCCGACCTCGTGGCAG
CGTGGGACGCCCAGGCCGAGACTGGGCGTCGGAAGGTTAGAGCACACCCC
GATGCACACCCGTGGAATTCGAAGAGCCGGGTTCAGCCCATCAGTCGACC
GACATGCCATTTGCACCCGGGGGCTTGAGACGGACTGTTCTGTTAAAAAC
CGGCACCAACGCCGAGAGCTGAATATCCTGCCGCGTGAAGCCGGGTCAAT
GTGGAAGGCCGAGAGAACTGGGGAGGGGGGCACGCCGGCACATGAAAGAT
TCTGTCGCATTGCACCGTACGTGAGATGGCCAACAGCACGCTTATTACCA
ACTGCACGCTTGAATGTCCTTGGTATCGAGCCTGCCTCTTGACTGTCACG
GGGATGGCCCCTCGCATTGGCGTTGGCGGTTGCTGGGGCTCTTGGGAGTC
CCGTGAGCGCACACGTGCCACAACTCCCGTTGCGTGTCATACAGGATATG
GTTCAGCCACCTCAGCAATTCGTACCGCGGTACCTAAACACGAGCACTTG
AATGCATTGTCTCACTCTTTCTTTTTTGCTTTTTTGTGTTCTACTTTGCT
AGCTACCTCTTCTAACCCCCCACTAGGTTCCCCAGTTAGTCAAACCTCGA
CACCTTATTCTGGCTTCCTTAGAGTGAGCACACTAAATTTCACATTCGTG
AGATTGCACCTCACTACAATTTGCTTGACCCACATTCTCTCACTGTGGTG
GCTTCAGCACCACCCCCCGCCTGCGTGATCCTCCTCTCTGCACTGGTTGG
GTCCTGACAGGGGAACACTTGCTCGCCCCCTCTTGCAGTGTCTCAGTGCA
TCAAGGCGTTGGGTCGTGCTTGAGCCCAGTTTCATTTATGCTGGTGCTGG
CCGTCGAGACTCCAGCGACAAAGCCAACCCTTTCACCCCTGATAAAGTCC
GCTTACTAGAGTTGTGAACCGAGTCGGTTATTTTCGATGTACGGTAGATT
ATAACCGATAATCGATAACTGACCGGCCGAGGTCCCGGTTTGTCGGTATT
TTCGCTCCTTCAAGATCGTGCGTATTTTGACCGCGAATGTAGCCGTTGCG
GTCCACATCTACCGGCACGGTCGTGCCGGCGTCCCGGACAGAGCCGTTAC
CGGCAATAAAAAGATATGGTAGCTATCGCTATGTGCTCGCGCACTCCATA
GATACGTGTAGCTGCCGTCAATTTGAGCGTGCTATGGTTGCGTGTGTAAG
TTTCCTGGGCCCTACCCAGATTTCAGCGGGGAACTCACCAGGAGCTCCGT
TTTCCCACTCGCTGCTTTTCTTTCAACTCAGTAGAGAGCCCTTCTCAGTC
CCCACTGCCATCACTGAATTCTACCTTAGGTGTTGTCGGTCTTGATGCAC
AACCTTGGGTGGCCACAGCCGGACAGGGCTGCACGATGGCCCAGTTGACA
CCTCCACAGTAATGGCTGTGACGGCCACTTGCTTGGAAGTATGCGGCACA
GCACCAAGCCGTGCCTCCGATCATGCCAATTGCAGGCAAGACCACTCGAA
AACATGCTCACAGGCCGAGGGTTAACTTGACATGATGAGGATCCATCCTG
ACCGGAGAATGTGTGTAAAGCCCCCCAACATCATGGGAGTTTACGCGGGC
AGTTGTTCGGCGGGTGCAAGTCGGTTCAAGCAAAGAAACAGCAAGGTGAA
GGGATGGGACGACTTTGTCGTTCCGGGAACTGAGGTTTCAGGTGCCTGCA
AAGACCAAGAAGGCTTTTGCGGTGGTTCTGCCGGTGTCAACTTAACCTGT
TGAGTTGTGTACGCCCCGCCTTCATCTGAACCACGTTGCTTGCTGACGGG
GGTGTGAGCACTGCTTTTGCTACACGGTGAAAACACGTTAGCACGATCAT
CCTGTACGCTCCAACCACGCGCAGCATGCAGAGACAGGCTCGACGAAGGT
CCGCCCTGTACCGCGATTTTTCGGGTGGTGTGTGACATGGCTTCTTTGCC
GACCACCGAAACCTTGAAGCAACGGACCGAAGGGGGGAAAAGCTACGTGT
AGGCCGGGGGTCGGTGGCACGGCAGGAGAACCCCACCGCTGGTGCGCATC
ACGGCACCGTATCGATGCACAAAGCAAAGCGGCAGCTGCCACAGCGGGTG
CCCTCCAGGGCTTTGCCCTGTTCCAGCACGCACGGGTTTTTTGCTGTTGG
GCGCCGGGTCAAGAAAAAAGAACGATGTCTGCGCTGGATTGGTCATCACG
ACCGGACGAATCCACCTTGCTCCAGAACGGACGGGTGTGACAGCCGATGG
GTTTTTTACTATCGGTGTCTTGTTTTTACTATGGATGTGACAGGGTTTTT
TACTAGCGGTTTGACCTCAGCCGGCCAGCCAGCCGGCCGGCCAGTTATTC
ACCCGATCAGCAAGCGCGGCAGCACCGAAGGGGGGGCGACCTTGCCCCCG
GGTCTCGAAGCAAGTAGCTACGCTGCGCTCGCAAGGTTCCGTTCTACTCC
ACGTTGCGAGCTTTGCTCGCAACAACAACCGAATCCTTCCGCTTCAAAGG
TGATCGAGAAATAACCGATAACTGATCGATCGCGACGCTGATTGAAAAAA
ACATCGCTTTGACCAGTCGGTTCACAGCTCTACCGCCTACACACCAAGTG
TGTGCACCGTGACAGCGAGGTGTGTGAATGAATTCGTGGATCAAATACAT
TGTAGTGAGGTACAAGCTCACGCATGCGAAATTGAGTCTGCTCACTCTCA
GGACTACGGAATATGATGTTGAGAGTTGATTGACACAGGAGCCAAGTGGA
GGCCGAGAAAACATGCCTTGATGTTGGCAAATTATATACGTAAACACAGC
ATACTTCGAAGCATGGCAAATTAGAATGATACTTCGAAGTACTTGTTTTA
TCGTGCGCGGCAGATGGCCAGGAAGGACGATATATGCCAACCTAGAACGG
CAGTTTCATCGTGCACGGCAGGCAGCCAGGAAGGACGATATAGGACAAAT
TGCGCTGACAGTTTTACTGCGGCTCGGCAGGTGGCCAGAAAGGACGATGC
TGCCAACGAAGAGGCAAAAATTAGCTTGATTATGGCAAAGTGTAAAAGAA
TGCTTAAAGGTAGGTGTCAAAATTTAATGAAGGTTTTATCGCGCGGCGGC
AGGCGGCCAGGCAGGACGATGCCGCCAACGAGGGGGACGCCAGCGAGAGC
GAGAGAGTGTATGAATGAGTAAACATACTCTATGTGGCTAGTTTTTGAGC
ACACCCAATTTAACATGCGTGACATTGCGCCTCATTTCAATTTACTAGAC
CCACATACGGCAAAATGGAATGATATTTTCATCGTGCGCGGCCGCAGGCG
GCCGCGAAGGCTGCCGACGAGGTTTATGAATGAGTAAACACCTAAACATA
ATAATAACGGTAAAAAAACATAGAATGATACCTACACGGTTGCTCCGACC
TGGCATAGCAGGATCGTGTGGCCAAATGGCCGTTCGGCTACCCCGCCCTC
GCAAGGCGCAAGGGGGCCGAACCGGGTCAGCACGGAGTATACTGGCTCGG
GACGGTTGCATGCACATAGGATGGGTTCCCATCCGCCATGAGTACACACA
CACACTTGCTTACTTACTTTACTCTGCTGGTGTTCCTCTGTGTTTTCTTG
CTTTTCACTCTGCTCGCTCTGCTTGTTCTACCTTTGTACTTTTAGTTTCT
TTAATACAGTACTTAGTTAGTTTTGTCGCGCATGGCAGGCGGCTAGGAAG
GACGATGCCGCCAACGACGAGGCCACCAGCGAGAGCAAAAGAGTGGCAGG
TGCCATTTTCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:3129634..3133547-

>mRNA_S-ischiensis_contig12.2766.1 ID=mRNA_S-ischiensis_contig12.2766.1|Name=mRNA_S-ischiensis_contig12.2766.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=522bp|location=Sequence derived from alignment at S-ischiensis_contig12:3129634..3133547- (Schizocladia ischiensis KU_0333)
CAAGGAATTGCACAGGCCCTGACCCGTGCAAATTTGCAGCGAGAGCCTGC
GCGCACACCATGGTGGTGCTCGAGGCGATGGGAGGGGCGTGGGAGTCTGC
TGCAGGGCAGCAACCAAGCATGTACTTGTTCCCGCCCGACCTCGTGGCAG
CGTGGGACGCCCAGGCCGAGACTGGGCGTCGGAAGCAAGGAATTGCACAG
GCCCTGACCCGTGCAAATTTGCAGCGAGAGCCTGCGCGCACACCATGGTG
GTGCTCGAGGCGATGGGAGGGGCGTGGGAGTCTGCTGCAGGGCAGCAACC
AAGCATGTACTTGTTCCCGCCCGACCTCGTGGCAGCGTGGGACGCCCAGG
CCGAGACTGGGCGTCGGAAGGCGGCTAGGAAGGACGATGCCGCCAACGAC
GAGGCCACCAGCGAGAGCAAAAGAGTGGCAGGTGCCATTTTCGGGGGCGG
CTAGGAAGGACGATGCCGCCAACGACGAGGCCACCAGCGAGAGCAAAAGA
GTGGCAGGTGCCATTTTCGGGG
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