mRNA_S-ischiensis_contig12.2747.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2747.1
Unique NamemRNA_S-ischiensis_contig12.2747.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:2796211..2796953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size743
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2747.1prot_S-ischiensis_contig12.2747.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 2796538..2796939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.674888-UTR-S-ischiensis_contig12:2796210..27965371622815639.674888-UTR-S-ischiensis_contig12:2796210..2796537Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2796211..2796537 +
1695739820.2803159-UTR-S-ischiensis_contig12:2796210..27965371695739820.2803159-UTR-S-ischiensis_contig12:2796210..2796537Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2796211..2796537 +
1622815639.6993332-UTR-S-ischiensis_contig12:2796939..27969531622815639.6993332-UTR-S-ischiensis_contig12:2796939..2796953Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2796940..2796953 +
1695739820.298374-UTR-S-ischiensis_contig12:2796939..27969531695739820.298374-UTR-S-ischiensis_contig12:2796939..2796953Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2796940..2796953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.688806-CDS-S-ischiensis_contig12:2796537..27969391622815639.688806-CDS-S-ischiensis_contig12:2796537..2796939Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2796538..2796939 +
1695739820.288751-CDS-S-ischiensis_contig12:2796537..27969391695739820.288751-CDS-S-ischiensis_contig12:2796537..2796939Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2796538..2796939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2747.1

>prot_S-ischiensis_contig12.2747.1 ID=prot_S-ischiensis_contig12.2747.1|Name=mRNA_S-ischiensis_contig12.2747.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=134bp
MSAPGPRAPFFSGLAQRQTNTPEETGRPGPPGRPSASRSWAAPHRCPSLS
GQIPHKRPHRAKILASSAQMANPRALFCGRRSHKIRRGCRLRRHKSWAAL
GPKPLSQAGCPKIPLLSYHWPGPAHKWSHHSRS*
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mRNA from alignment at S-ischiensis_contig12:2796211..2796953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2747.1 ID=mRNA_S-ischiensis_contig12.2747.1|Name=mRNA_S-ischiensis_contig12.2747.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=743bp|location=Sequence derived from alignment at S-ischiensis_contig12:2796211..2796953+ (Schizocladia ischiensis KU_0333)
TGACGTGGCCCCCGACCGTCAGGAGGCGCACACGCGGACACTGCGCGGGC
TCCCGTGCCCTCGACCGTGGCAAACAGACGGGGAGTGAGGAACGACGGCA
CTCTGCCCTGTGTGCCTCCACAACAACAAGGGGATCGGCCTGGCCAGGGT
CATCCAGTGTCCGAGATGCCACCACTGGAGGGCCAGGGACCCCTCCGCCG
CCCTAGCCATCAACGCCACAGGCATCGGGCAGCTGGCGGCACTGTGGGAT
GTGGTCATCCCACACAACCAATCAGGTGCAGGTGAGGGCCATGGGTCCTC
GAAACAGCTACCGCAAGTGTATGTAACATGTCTGCACCTGGGCCACGGGC
CCCGTTCTTCAGTGGCCTGGCCCAGCGACAAACAAACACCCCGGAAGAAA
CCGGGCGGCCCGGCCCCCCGGGCCGCCCATCGGCATCGCGAAGTTGGGCA
GCGCCTCACCGATGTCCGAGCCTGAGCGGTCAAATACCACACAAACGGCC
CCACAGGGCGAAAATTTTGGCCTCGTCCGCCCAAATGGCGAATCCTCGGG
CACTATTCTGTGGGCGGCGGAGCCACAAAATCAGGCGGGGGTGCCGCCTG
CGGCGCCACAAAAGTTGGGCGGCTTTGGGGCCAAAACCGTTATCTCAGGC
GGGCTGCCCAAAAATACCCCTGCTTTCTTATCACTGGCCTGGCCCGGCCC
ATAAGTGGTCACACCATAGTCGGTCCTGACGCCAGCCAGCCAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:2796211..2796953+

>mRNA_S-ischiensis_contig12.2747.1 ID=mRNA_S-ischiensis_contig12.2747.1|Name=mRNA_S-ischiensis_contig12.2747.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=804bp|location=Sequence derived from alignment at S-ischiensis_contig12:2796211..2796953+ (Schizocladia ischiensis KU_0333)
ATGTCTGCACCTGGGCCACGGGCCCCGTTCTTCAGTGGCCTGGCCCAGCG
ACAAACAAACACCCCGGAAGAAACCGGGCGGCCCGGCCCCCCGGGCCGCC
CATCGGCATCGCGAAGTTGGGCAGCGCCTCACCGATGTCCGAGCCTGAGC
GGTCAAATACCACACAAACGGCCCCACAGGGCGAAAATTTTGGCCTCGTC
CGCCCAAATGGCGAATCCTCGGGCACTATTCTGTGGGCGGCGGAGCCACA
AAATCAGGCGGGGGTGCCGCCTGCGGCGCCACAAAAGTTGGGCGGCTTTG
GGGCCAAAACCGTTATCTCAGGCGGGCTGCCCAAAAATACCCCTGCTTTC
TTATCACTGGCCTGGCCCGGCCCATAAGTGGTCACACCATAGTCGGTCCT
GAATGTCTGCACCTGGGCCACGGGCCCCGTTCTTCAGTGGCCTGGCCCAG
CGACAAACAAACACCCCGGAAGAAACCGGGCGGCCCGGCCCCCCGGGCCG
CCCATCGGCATCGCGAAGTTGGGCAGCGCCTCACCGATGTCCGAGCCTGA
GCGGTCAAATACCACACAAACGGCCCCACAGGGCGAAAATTTTGGCCTCG
TCCGCCCAAATGGCGAATCCTCGGGCACTATTCTGTGGGCGGCGGAGCCA
CAAAATCAGGCGGGGGTGCCGCCTGCGGCGCCACAAAAGTTGGGCGGCTT
TGGGGCCAAAACCGTTATCTCAGGCGGGCTGCCCAAAAATACCCCTGCTT
TCTTATCACTGGCCTGGCCCGGCCCATAAGTGGTCACACCATAGTCGGTC
CTGA
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