mRNA_S-ischiensis_contig12.2738.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2738.1
Unique NamemRNA_S-ischiensis_contig12.2738.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:2689856..2691761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size169
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.1867368-CDS-S-ischiensis_contig12:2689855..26899601622815636.1867368-CDS-S-ischiensis_contig12:2689855..2689960Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2689856..2689960 -
1695739818.6653793-CDS-S-ischiensis_contig12:2689855..26899601695739818.6653793-CDS-S-ischiensis_contig12:2689855..2689960Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2689856..2689960 -
1622815636.1984794-CDS-S-ischiensis_contig12:2691698..26917611622815636.1984794-CDS-S-ischiensis_contig12:2691698..2691761Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2691699..2691761 -
1695739818.673499-CDS-S-ischiensis_contig12:2691698..26917611695739818.673499-CDS-S-ischiensis_contig12:2691698..2691761Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2691699..2691761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2738.1prot_S-ischiensis_contig12.2738.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 2689856..2691761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2738.1

>prot_S-ischiensis_contig12.2738.1 ID=prot_S-ischiensis_contig12.2738.1|Name=mRNA_S-ischiensis_contig12.2738.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=56bp
MGGDAGWGLGSRWSSAAAAEQRIRHMGRDDLEPLLALPRPSELSPLPTGS
PASTPS
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mRNA from alignment at S-ischiensis_contig12:2689856..2691761-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2738.1 ID=mRNA_S-ischiensis_contig12.2738.1|Name=mRNA_S-ischiensis_contig12.2738.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1906bp|location=Sequence derived from alignment at S-ischiensis_contig12:2689856..2691761- (Schizocladia ischiensis KU_0333)
ATGGGGGGTGATGCAGGGTGGGGGTTGGGGTCAAGGTGGTCCTCTGCCGC
AGCCGCGGAGCAGGTTAGTGCTTTGAGGTCTTGTGAATAGTGGAACTGGA
GGGGGGGGTAGGAGAGAGAAGGTTGAGAGGCGTGTACATAGTTTGTTTGT
TTGTTTCTATCGAGCGTGTTTTGTTTTCACCCCCCTGTGAGTGAGGTTGG
ATGTTCGGGCACGACGCGCGTCGACGAATCTTTGAAGCACTGAGGTATCC
GCTGTAAAGTACAGTACTGTACATGATGGCAATCCAAGTACCTACTGTAC
TTTCTTTGGCAGGCATGTAAAATGCAGCACTGCAGGTGCAATGTGCAAGC
AATACATAGAGCTGTGAACGGCAGTCGGGTTTTGCCGCCCGATTCCGGTT
TCAGCCTTGCCCGGTTTCTCCATTTTTTTCCTCCTTCAAGATCGTGCACA
ATCATACTATTGACGTACAGTAGAGCTCTACCTGGCGGACGGCGACATTA
CCGTTATCGCCTTGCTCGGCCAGAACATATACTTCGAAGCAAGCTATTGC
GCAAAACCTTGCCGCGCCAAGAATCGGCCGAACCAAGGCGGCTGTGATTG
CCGGCTATCGAACGAAGTACAATTTAGCAGTGGTGGAGTATCTAAGCAAA
TCAACCTATTTATCGACAGTACTGATCTATTTTGAGTGGTAGATATGCGG
CGAGTTCCAGGCCCCGTGCCAAGAGGCTCGTCCCCAAACAGGACTCAACG
AAGCCCTTCGTCCCCTCTCAGAACAAAAGGAAAACAAAAAATATGAAGGA
AAGGGACGGGATGCTAGGAAAGGGAAGAGGCGCAGGGAAGTCTCTTGTGC
TCACAGTGGGGCATGCGGGTGGGGCAGGCGGGGATGAAGCCGCACACGAA
CACCGAGATCACGACGTACCTGGACGAGTGCGAGAAGAGAAGGCGTGAGC
AAGTGCCACAATATGTCGATCGATAGTCGATATTTGATAGTTTGACCCAC
TCTAAATCCAAGTACTTCGAAGTAGTTAGTAATGCCACCCACACAATCAG
TCGAGCCCGATAACTATCTACTGATTGACATTCCATCACTGCAGTTTAGG
CCTCCTCCTAGGGAAGCACTAAGAGGGTGTCACAAGCGTGTGTGGCGCCT
GCGGGCTGCAGCACCCACCGCATTTAGCCTTTTTTTCCCCTTCTTAATTG
GACTTACACACAACCCTATGATTACACGGACCCCAGCGGTAGAAGGGTTA
ACGCAGACCGGCGGACTAGAGAACAAGCTTTGGCGAGGCGCCGTTTTCAG
TCTCACGTTTGTGAGAATCAGGGTGCTTAGCAGATTTAGTGGAATGGGTA
CCGTAAGCCAGTTGCACTTTGCTCCTGAATCTTTTTGGATGCTTTACAAC
AGCGCTGGGCAACTCGTAAGCAACTTCGTCGCCCCCATGTGTCCATGACC
GGTGTGCACAATACTGCACTGGCCAATGACGACCCTGAGTATCTCCCCCT
CCATCGGTGATGGAATATCGAAGCAAGTCAACCTATTGATCGACAGTACT
GGTCTATACATCTATCGATAGTCGATATTTGATAGTTTGACCCACACTAA
ACCCAAATATTAACAGGAACAACACGGGGCGAGGTGCGGGCCACGTCACT
AAAGACGTCAGCAGTGGCCCTTCCTTATAGCTCGCCAGCGGGAACAAAAA
TCCAAGTACTTCCGGAAGTAGCTAGAAACGCCACCCACAAAATCAGTCGA
GCCCGATATCTATCCACTGACCGATATTCCATCGCTGCCCTCCATTGGCA
GCGCATTAGGCACATGGGCCGGGACGACCTGGAACCCCTGCTGGCCCTGC
CCCGCCCGTCTGAGCTCTCCCCACTACCAACAGGGTCACCCGCCTCCACT
CCATCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:2689856..2691761-

>mRNA_S-ischiensis_contig12.2738.1 ID=mRNA_S-ischiensis_contig12.2738.1|Name=mRNA_S-ischiensis_contig12.2738.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=336bp|location=Sequence derived from alignment at S-ischiensis_contig12:2689856..2691761- (Schizocladia ischiensis KU_0333)
ATGGGGGGTGATGCAGGGTGGGGGTTGGGGTCAAGGTGGTCCTCTGCCGC
AGCCGCGGAGCAGATGGGGGGTGATGCAGGGTGGGGGTTGGGGTCAAGGT
GGTCCTCTGCCGCAGCCGCGGAGCAGCGCATTAGGCACATGGGCCGGGAC
GACCTGGAACCCCTGCTGGCCCTGCCCCGCCCGTCTGAGCTCTCCCCACT
ACCAACAGGGTCACCCGCCTCCACTCCATCCCGCATTAGGCACATGGGCC
GGGACGACCTGGAACCCCTGCTGGCCCTGCCCCGCCCGTCTGAGCTCTCC
CCACTACCAACAGGGTCACCCGCCTCCACTCCATCC
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