mRNA_S-ischiensis_contig12.2726.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2726.1
Unique NamemRNA_S-ischiensis_contig12.2726.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:2569485..2570532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.835836-CDS-S-ischiensis_contig12:2569484..25697211622815635.835836-CDS-S-ischiensis_contig12:2569484..2569721Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2569485..2569721 -
1695739818.5046914-CDS-S-ischiensis_contig12:2569484..25697211695739818.5046914-CDS-S-ischiensis_contig12:2569484..2569721Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2569485..2569721 -
1622815635.855767-CDS-S-ischiensis_contig12:2570457..25705321622815635.855767-CDS-S-ischiensis_contig12:2570457..2570532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2570458..2570532 -
1695739818.5157144-CDS-S-ischiensis_contig12:2570457..25705321695739818.5157144-CDS-S-ischiensis_contig12:2570457..2570532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2570458..2570532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2726.1prot_S-ischiensis_contig12.2726.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 2569485..2570532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2726.1

>prot_S-ischiensis_contig12.2726.1 ID=prot_S-ischiensis_contig12.2726.1|Name=mRNA_S-ischiensis_contig12.2726.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=104bp
GGARCGLGGVRAGFQGGGGTPLASPRLAGTRRRHRRAHRFTGRWLLRGGQ
RPGPGPGRPGRHHHHHHHRAAHVRAVPLAAGEPPRGQGLPHARLHGPGFP
GASL
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mRNA from alignment at S-ischiensis_contig12:2569485..2570532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2726.1 ID=mRNA_S-ischiensis_contig12.2726.1|Name=mRNA_S-ischiensis_contig12.2726.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1048bp|location=Sequence derived from alignment at S-ischiensis_contig12:2569485..2570532- (Schizocladia ischiensis KU_0333)
GGGGGAGCTCGCTGCGGCCTCGGAGGCGTGCGGGCAGGTTTTCAAGGCGG
TGGTGGCACTCCTCTCGCTTCGCCCGTGAGTTTTGTTTCTGCTGAAGAAT
AGTGGCGATTATTTTCAACTGCTGTAGGGTTCGGTGGCGGTTATTTTCAA
CTGCTGTAGGCGTTCGCCCTTCGGACTCCGAAACCCGGCAATGTTTTGGC
TTCGCGCCCCGGAGTGTGTGTGTACTGCTGCTGTGGCTGCCGATGACGCG
TCGCGTTTGCGTGTGCATGATTGGTCGACATGGCCATACTAGCACCCCTG
CCTAGGCGAGGCTTGGGGAATCAAGTGTGTCGATAGGTAGGCTCGGGGCC
ATGGCAAGCACAGCGTGAGTAGTGTCAACAGGAAAAACACAGTGTCGGTG
AGGTGCAGTGCAGGCCACGTGACAAGAGACCTCAACAGTGGCCCTTCCTT
CACTAGCTCGCCAGGGAAGGGTTGTGTAGCAGCGTGAGTACTAGAGTAGT
AGATACTTCGAACTACGAAGTACATGTGAGAGACACCTGCTTTGGACCTA
TTTATCGACAGTACTGATCAATTTTGAGTGGTACTTCGTAGATAAGCGGC
GAGTTCCAGGCCCCGTGCCAAAAGGCTCGTCCCGAAACAGGACTGATCTA
TATATCTATCGATAGTCGATATTCGATAGTTTGACCCACACTAAATCCGA
GTACTTGAAGTAGCTAGTAGCGCCACCCACCAAACCAGTTGAGCCCGATA
ACTATCTACTGATCGATATTCCATCACTGCCGCTGCCCCCCCTCATGCCG
CCCGCCCGCAGCGGCTGGCAGGTACGCGTCGCCGCCACAGAAGGGCCCAT
CGGTTTACCGGCCGTTGGCTACTACGAGGCGGACAGCGGCCCGGCCCCGG
GCCCGGCCGGCCCGGTCGCCACCACCACCACCACCACCACCGTGCTGCGC
ATGTGCGAGCTGTGCCTCTTGCTGCTGGCGAGCCCCCACGCGGGCAGGGA
CTCCCTCACGCACGCCTCCATGGCCCTGGCTTCCCTGGCGCAAGCCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:2569485..2570532-

>mRNA_S-ischiensis_contig12.2726.1 ID=mRNA_S-ischiensis_contig12.2726.1|Name=mRNA_S-ischiensis_contig12.2726.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=624bp|location=Sequence derived from alignment at S-ischiensis_contig12:2569485..2570532- (Schizocladia ischiensis KU_0333)
GGGGGAGCTCGCTGCGGCCTCGGAGGCGTGCGGGCAGGTTTTCAAGGCGG
TGGTGGCACTCCTCTCGCTTCGCCCGGGGGAGCTCGCTGCGGCCTCGGAG
GCGTGCGGGCAGGTTTTCAAGGCGGTGGTGGCACTCCTCTCGCTTCGCCC
CGGCTGGCAGGTACGCGTCGCCGCCACAGAAGGGCCCATCGGTTTACCGG
CCGTTGGCTACTACGAGGCGGACAGCGGCCCGGCCCCGGGCCCGGCCGGC
CCGGTCGCCACCACCACCACCACCACCACCGTGCTGCGCATGTGCGAGCT
GTGCCTCTTGCTGCTGGCGAGCCCCCACGCGGGCAGGGACTCCCTCACGC
ACGCCTCCATGGCCCTGGCTTCCCTGGCGCAAGCCTGCGGCTGGCAGGTA
CGCGTCGCCGCCACAGAAGGGCCCATCGGTTTACCGGCCGTTGGCTACTA
CGAGGCGGACAGCGGCCCGGCCCCGGGCCCGGCCGGCCCGGTCGCCACCA
CCACCACCACCACCACCGTGCTGCGCATGTGCGAGCTGTGCCTCTTGCTG
CTGGCGAGCCCCCACGCGGGCAGGGACTCCCTCACGCACGCCTCCATGGC
CCTGGCTTCCCTGGCGCAAGCCTG
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