mRNA_S-ischiensis_contig12.2723.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2723.1
Unique NamemRNA_S-ischiensis_contig12.2723.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:2564181..2565604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size226
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.772834-CDS-S-ischiensis_contig12:2564180..25642331622815635.772834-CDS-S-ischiensis_contig12:2564180..2564233Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2564181..2564233 -
1695739818.4836764-CDS-S-ischiensis_contig12:2564180..25642331695739818.4836764-CDS-S-ischiensis_contig12:2564180..2564233Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2564181..2564233 -
1622815635.7883866-CDS-S-ischiensis_contig12:2565432..25656041622815635.7883866-CDS-S-ischiensis_contig12:2565432..2565604Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2565433..2565604 -
1695739818.4941115-CDS-S-ischiensis_contig12:2565432..25656041695739818.4941115-CDS-S-ischiensis_contig12:2565432..2565604Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2565433..2565604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2723.1prot_S-ischiensis_contig12.2723.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 2564181..2565604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2723.1

>prot_S-ischiensis_contig12.2723.1 ID=prot_S-ischiensis_contig12.2723.1|Name=mRNA_S-ischiensis_contig12.2723.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=75bp
ATPGRTAAPGGDCPAGRCGKGNNGAYPAGGVLAAGGAAPEPQDVGAAGAA
AAAAVDARPPRAPPGDHLRLPQGPD
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mRNA from alignment at S-ischiensis_contig12:2564181..2565604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2723.1 ID=mRNA_S-ischiensis_contig12.2723.1|Name=mRNA_S-ischiensis_contig12.2723.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1424bp|location=Sequence derived from alignment at S-ischiensis_contig12:2564181..2565604- (Schizocladia ischiensis KU_0333)
GCTACACCGGGACGCACCGCTGCGCCTGGCGGCGATTGCCCTGCTGGCAG
ATGCGGCAAGGGTAACAACGGTGCCTACCCCGCTGGAGGCGTGCTTGCTG
CGGGAGGCGCTGCCCCTGAGCCTCAAGACGTCGGAGCCGCGGGCGCGGCA
GCTGCTGCTGCGGTCGATGCACGTGAGCGGGGGGGCAGTGGCGGGTGTGT
GGGCTTTGGCGTGGCGTGGCACTTGCTTTTTGTTGTCCTCCTCCTCCTGG
TCCTCCTTCTGGTCCTCCTCCCCCTCGTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCGCCACCC
TCCCCACCCCCCCCTTCCCGACACGATCCTTCCTGGCGAGCTAAGGAAGG
GCCACTGTCGACTCTTTGGTGACGTGGCCTGCAGACCTCGCCATGTGTTT
TCCCTGTTACATACTGTAGTACTTCGAAGTACATTCTTTTTCGTTTTCTC
TTGCCCTGCGAGGGAAGGAAGGGCTTCGTTGAGTTCTGTTTTGGGACGAG
CCTCTTGGCACGGGGCCTGGAACTCGCCACTTATCTACCACTCAAAAATA
TCGGTACTGTCGACAAATAGGTTGATTCGCTTGGATATTCCATCACTGGT
GATAAACGTGAACGCCCCCCCCTGCAGGTCCTCCTCGAGCGCCTCCGGGA
GACCACCTACGCCTGCCGCATGTGTTTTCCCTGTTGCATACTTCCTGGAA
GTAGTACTTCGAACAGGCAACCCGTGTATCGATAAACGCCCGTGATAAAT
GCCCGTGATAAACTTGAACTCCCCCTCACAGGTCCTCCTCGAGCGCCTCC
GGGAGACCACCTACACCTGCCGCAGGGACCTGGCCCTGTTCTCTAGTACA
CCAAACATGCAACCCATGTATCGATAAACGCCTTGTGACAAACGTGAAAT
GCCCCCCCCGCAGGCAGTGATGGAATATCTAAGCAAATCAGCCTATTTAT
CGACAGTACCGATCTATTTTGAGTTGTAGATAAGCGGCGAGTTCCAGGCC
CCGTGCCAAAAGGCTCGTCCCAAAACAGGACTCAACGAAGCCCTTCTTCC
CCTCGCAGAACAACAAGAAACCAAAAGTAAAGAAGGAAAGGGCCGATCTA
TGTATCTATCGATAGTCGATATTCGATAGTTCGACCCGCACTAAATCCGA
GTATTTTAAGGAACAACATGGGGCGAGGTGTGGGCCACGTCACTAGAGAC
CTCAACAATGGTCCTTCCTTGGCTCGCCAGGGGAAAGTTGTGCGGGTAGT
TAGTAGCGCCACCCACAAAATCAGCGAGCCCGATAACTATCTGCTGATCG
ATATTCCATCACTGCCCGCAGGTCCTCCTCGAGCGCCTCCGGGAGACCAC
CTACGCCTGCCGCAGGGCCCTGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:2564181..2565604-

>mRNA_S-ischiensis_contig12.2723.1 ID=mRNA_S-ischiensis_contig12.2723.1|Name=mRNA_S-ischiensis_contig12.2723.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=450bp|location=Sequence derived from alignment at S-ischiensis_contig12:2564181..2565604- (Schizocladia ischiensis KU_0333)
GCTACACCGGGACGCACCGCTGCGCCTGGCGGCGATTGCCCTGCTGGCAG
ATGCGGCAAGGGTAACAACGGTGCCTACCCCGCTGGAGGCGTGCTTGCTG
CGGGAGGCGCTGCCCCTGAGCCTCAAGACGTCGGAGCCGCGGGCGCGGCA
GCTGCTGCTGCGGTCGATGCACGCTACACCGGGACGCACCGCTGCGCCTG
GCGGCGATTGCCCTGCTGGCAGATGCGGCAAGGGTAACAACGGTGCCTAC
CCCGCTGGAGGCGTGCTTGCTGCGGGAGGCGCTGCCCCTGAGCCTCAAGA
CGTCGGAGCCGCGGGCGCGGCAGCTGCTGCTGCGGTCGATGCACGTCCTC
CTCGAGCGCCTCCGGGAGACCACCTACGCCTGCCGCAGGGCCCTGACGTC
CTCCTCGAGCGCCTCCGGGAGACCACCTACGCCTGCCGCAGGGCCCTGAC
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