mRNA_S-ischiensis_contig12.2717.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2717.1
Unique NamemRNA_S-ischiensis_contig12.2717.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig12.2717.1 vs. uniprot
Match: A0A6H5KK83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK83_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.170e-11
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 2 
Query: 2756 SRRQLFGTGSPAVRQMSSNKSFKDAWLSDVGAYPVMAVIGIGFVFPLFWGLKTMGTNPDVHVSRTSRKTVLR 2971
            +R    G G+P   +  + KSFK+AWLSD+GA+PV+ VIG    F  +W   T+ T+PDV ++RT R+T +R
Sbjct:   55 TRGMASGEGAP---KYGAAKSFKEAWLSDIGAWPVIGVIGFAVTFVTYWSFSTLATHPDVRINRTIRETTIR 123
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BLAST of mRNA_S-ischiensis_contig12.2717.1 vs. uniprot
Match: D7FSK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK8_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.240e-11
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 2 
Query: 2783 SPAVRQMSSNKSFKDAWLSDVGAYPVMAVIGIGFVFPLFWGLKTMGTNPDVHVSRTSRKTVLR 2971
            S    +  + KSFK+AWLSD GA+PVM VIG    F  +W   T+ TNPDV ++RT R+T +R
Sbjct:   35 SEGTPKYGAAKSFKEAWLSDKGAWPVMGVIGFAITFVTYWSFSTLLTNPDVRINRTIRETTIR 97
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BLAST of mRNA_S-ischiensis_contig12.2717.1 vs. uniprot
Match: A0A836C9M1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.850e-6
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 2 
Query: 2810 NKSFKDAWLSDVGAYPVMAVIGIGFVFPLFWGLKTMGTNPDVHVSRTSRKTVLRHEE 2980
            NKS KD WL D GA+P++ +I          G +T+  N DV VS+ SRK+VLR E+
Sbjct:    8 NKSAKDIWLGDRGAWPIIGIISTALTVGTICGFRTLFFNSDVRVSKHSRKSVLREEQ 64
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KK83_9PHAE4.170e-1144.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK8_ECTSI5.240e-1149.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C9M1_9STRA2.850e-645.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:2535237..2540285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADH-ubiquinone reductase complex 1 MLRQ subunit
Ec32 orthologEc-04_000360.1
Exons4
Model size3035
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2717.1prot_S-ischiensis_contig12.2717.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 2537788..2540233 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.0353718-UTR-S-ischiensis_contig12:2535236..25373641622815659.0353718-UTR-S-ischiensis_contig12:2535236..2537364Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2535237..2537364 +
1695739833.6360843-UTR-S-ischiensis_contig12:2535236..25373641695739833.6360843-UTR-S-ischiensis_contig12:2535236..2537364Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2535237..2537364 +
1622815659.048713-UTR-S-ischiensis_contig12:2537412..25377871622815659.048713-UTR-S-ischiensis_contig12:2537412..2537787Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2537413..2537787 +
1695739833.645049-UTR-S-ischiensis_contig12:2537412..25377871695739833.645049-UTR-S-ischiensis_contig12:2537412..2537787Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2537413..2537787 +
1622815659.1075873-UTR-S-ischiensis_contig12:2540233..25402851622815659.1075873-UTR-S-ischiensis_contig12:2540233..2540285Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2540234..2540285 +
1695739833.6912103-UTR-S-ischiensis_contig12:2540233..25402851695739833.6912103-UTR-S-ischiensis_contig12:2540233..2540285Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2540234..2540285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.0598266-CDS-S-ischiensis_contig12:2537787..25380651622815659.0598266-CDS-S-ischiensis_contig12:2537787..2538065Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2537788..2538065 +
1695739833.6545525-CDS-S-ischiensis_contig12:2537787..25380651695739833.6545525-CDS-S-ischiensis_contig12:2537787..2538065Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2537788..2538065 +
1622815659.0853045-CDS-S-ischiensis_contig12:2538565..25386321622815659.0853045-CDS-S-ischiensis_contig12:2538565..2538632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2538566..2538632 +
1695739833.665316-CDS-S-ischiensis_contig12:2538565..25386321695739833.665316-CDS-S-ischiensis_contig12:2538565..2538632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2538566..2538632 +
1622815659.097427-CDS-S-ischiensis_contig12:2540098..25402331622815659.097427-CDS-S-ischiensis_contig12:2540098..2540233Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2540099..2540233 +
1695739833.6756327-CDS-S-ischiensis_contig12:2540098..25402331695739833.6756327-CDS-S-ischiensis_contig12:2540098..2540233Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2540099..2540233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2717.1

>prot_S-ischiensis_contig12.2717.1 ID=prot_S-ischiensis_contig12.2717.1|Name=mRNA_S-ischiensis_contig12.2717.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=160bp
MRCDVMCTLSHCSLTSLAVTNITSHCTTLRKPFLGPPFDFTGRIVKDSQG
KTDKRTGLGLGLGTLILFFFASCDGHCEPPGGRPSRRQLFGTGSPAVRQM
SSNKSFKDAWLSDVGAYPVMAVIGIGFVFPLFWGLKTMGTNPDVHVSRTS
RKTVLRHEE*
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mRNA from alignment at S-ischiensis_contig12:2535237..2540285+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2717.1 ID=mRNA_S-ischiensis_contig12.2717.1|Name=mRNA_S-ischiensis_contig12.2717.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5049bp|location=Sequence derived from alignment at S-ischiensis_contig12:2535237..2540285+ (Schizocladia ischiensis KU_0333)
ACCAGAGGTGAGCAAAGGAGTATGCCTGCCCCGCCGGCGTACCTCACGTA
AACATGACCTCTTCCCTGGCGCTGTGGGCGGCGGACTGGACGCCCGCAGC
CGTTTGCGCCCCAGGCGAACGGGCGAAAAGTTTGGGGAGGGGGGGCACTC
CCACACACACGCACGCACGTTCTCGTTTGACCGCGAGAACTGCTGCCCCC
CGCAGCAACCGGGCGACTGAGGTCGCTCAATCTTGTGGATCGTTCCTGTC
CGCAATGTGGGGGCCGATTAAGCACCAGCGGGTCCTGGCGCCCTCCCCCC
CCCTCCCCCCTGTACTTATGCTCCAATGCGCCATGGTGGCGCGTGCTTGC
TCTCACCAGGGTTCTGCCCAGTGTTCGGAAGAATGGCATCCGCCGCGTTA
GGGCAGTCTATCCTTCGCAGCGCCGCCCTCCAGGCCGGGAGGCGCCTCCC
CAGGTGAAGACGTTGGAGTATGTGTACAAGCCGTGAATATTCAATAAGTA
GCAGCGTTCGTTCTGTTTTTGGTTCTTTCTTAACTGGTCTAGAAAAATCA
AGGGTTTAACTGGTCTATAAAAAATCAAGTGTGTTAAGTTCCTGATGCAT
TCTTCCCCCTCCCCCCCCCTTTAAGCTTTTTTTTTGTGCAACGGTTGGGC
TTTGCCGGCAGATACTGCAGGTCATTTTCTCAAGATTTAATATTTTGGCA
GGAGCGCCGGTCGCGGTTCTCTGCCAGGAAACTATCTCCACTCTAAACCC
TTTCACCCCTACTAAATTGGACTTACACATGAAAACCCTATGACTATTCG
GAGCTCAAGGGTAAAACGGTTAACTTTGTGCTTGGGGGGGGGTCCCACCA
TTACGGCAACGGCCGCACAAGTTCTTCGGAGCAATTTGAACCGCTTTTGC
GGAACAAGGACAAACGACGGCGGAGCCGTTGCTTGCCTGTGCCAACCTTT
CCTGGGGTGCATCTTCTTGCTGGGTACGCACAGGGCTGTGATTCATATGC
ATTGCAACGAGGTACAATCGCACATGTGTGAGATTGCAGCGCTGCTGCAC
TGAAGTAGTCAACTTGGTTCTTTCAAGTACATGAGTACAGCAGTGCAAAG
TAGTGCTTCTACGGCTGTATGGTACTTGGTCATCGTCGGAGTGGTCTCGC
AGCTCCCAATCATTTTCTGGTCCCGTTGTTTCGTTTTTTTGGGAGGGCGT
TGCGCGCCTGTGGCAACAGTAGTACGAGCATCTCGGCCTGATTCGGCGCA
GTACAGTAAAACAAACCACACGGACGTGTTCCATAGTGCTGTGAACCGGG
GCCGGCTGTTTCCAGTCGGTCCCGGTCAGTGATGGAATATCAAAGCAAAT
GAACTTATTTATCGACAGTACGGATCTATTTTGAGCGGTAGGTAAGCGGT
GAGTTCCAGGCCCCGTGTCAAAAGGCTCGTCCCGAAACGGGACTCAACGA
AGCCCTTCTTCCCCTCGCAGGGCAATATATCTATCGATAGTCGATATTCG
ATAGTTTGACCCACACTAAATCCAAGCAGTTAGCAACGCCGCCCACAAAA
TCAGTGGAGCCCGATAGCTATCTACTGATCGTTATTCCATCGCTGGTTCC
AGTTGACCGGCCGGCCGGTGAACCCGGCCAGAGCCTTGCCCGGTTTCTCC
CTTTTTGTCCTTTAACATCGTGCGTATTTCGACGTTCGATTATATAGCCG
GTGGTGCACGGAGATGTTGCCGTTGTCGCCGGTTTCGGCTGAAAAACATG
GCCATTGCCGCGCAAACACCAGAGTAACCGTTGAAAAAAACGGCCGAACC
GAATCGGCCATGATGTCGGTATCAATTTGTCCGGCCGGCCGTGCCGGTTC
ACAGCTCTTATGTTCCAGCGGTCTAGCTACCTTTTTCATTCTACACACAC
ACATATATAATGAGATCGACCCACGCAATTGGGCGTGCCAAAACACACAC
ACACACACACTCAAATCTCCAACAAACTCCAAGCCGTTCATTCGTGGACA
AGCGCGAACGATCTCGCGAGGGGCGAGGCCTTCTCTCTTGTGTCGCCCAA
AGGCCCCGACGGCCTCGACCTTTGGTCTCTTTGCAACGCTGGGGAAAAAA
GTATTAGTACATCAATATCTCAGAGCCCTCTCTCTCTCCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGTGGAGA
GCGGAGAAGCGAGCGGGCAATAGTTCAGAGGTGGCCCTATTTAACTATGG
TTCCGGGCGCCAACGCGGAAGGAAGCCCCCCCTTCAATTGCGATGCAATG
TGATGTGATGTGATGTGTGCTCTAATTCACTGTACTGTAGTCCCACATCA
CTCCCCACAATTCACATCACATGCGATACGATGTGATGTGATGCATACTC
TATAGTTCATGGTAGTCCCACATCACTAGCCGTAATTCACATCACATCAC
GACATGTGATGTGATATGTGGTCTAGTTCTCTGTAGTCCTACATCACTAG
CCGTAATTCACATCAAATCACATCGCACCACATCCCTTCAATTGCGATGC
GATGCGATGTGATGTGATGTGTACTCTAAGTCACTGCAGTCTCACATCAC
TAGCCGTAACTAACATCACATCACATTGCACCACATTGCGAAAGCCCTTC
CTTGGCCCGCCTTTTGACTTCACAGGGCGAATAGTTAAAGATAGCCAGGG
GAAGACGGACAAGAGGACGGGACTGGGGCTGGGGCTGGGCACTCTCATCT
TGTTCTTCTTTGCTTCCTGCGATGGCCACTGCGAGCCCCCCGGTGGACGC
CCTTCGCGTCGTCAGCTGTTCGGAACAGGGTTGGTCTTAACCCCTAGGGG
TGCCCTTTTAGGCCCTTAATTAGAGGTAACTAGGGGTAGTTAGACCTACA
ATGAAGGCTAATTAGGCCCTAATTAACCTCTAAGTGCCAACCCTGTCCAC
GGATACCACCACCACCGCCACGGTCACCGCCACTGCCGCCGCCACCGCCG
TCCCACCTCTACTACTGGCTGCCATTGTTGCCGCCGCTGACGCTGATGCC
GCCGTGACCACCGCGACCACACGGCTGCTGCCACCACCGCCGCCGCCGCC
GCCACCACCGCTGCCATTGCCACCGCTGTGACCACCTCCACCACTCGGTT
CTTAAATGGGACAACCACTAATACGATAGCAGTCAATCTCGCACACTTGC
GATTGTACTTCGGTACAGTTTATATGAAGCATCAACACCACCGCCACCGC
CGCCGCGACCGCTGCCACCGCGCCCACTGCCATACAAAAACGCCACCACG
GCTTCTGCGACCATGGGGTGCCTGGGCAGTTCGCCAGCCGTTCGTCAGAT
GTCCTCCAATAAGTCATTCAAGGACGCCTGGCTCTCGGACGTGGGGGTGA
GCCACAGTGTGATGTGATGTGATGTGGTACGGTGTGGTGTGATATGATGT
GATGCGATGTGATGTGATGTGACGTGGTGTGGTGTGGCCACTTCCCATCA
CATGGATATCTTCAACTCTCCAATAAACAAACACGATTGATTGATTGGTT
TTGGCCTCATCCAGGCGCATCGAATCAGACAAGTACCTCCAAGCACTCCA
ACCACTACTGTAATACACTAGTACGTGCACACTCATTCTCACACACGTGC
GATTGTAACTCGTTACAATTTATATGCATCACATCCAAGCACCACCACTA
CTGTAATACACTAATACGTGCACACTCATTCTCACACACGTACGATTGTA
ACTCGTTACAATTTATATGCATCACATCCAAGCACTCCGAGCAGACGTAT
ACTTTGCGTCCGTGTGCCCCCGACAATTGGGTCCCGGGGGGGGGGGAGTA
ACATCTTTTTGGATATTGTGACAAGTACAAAGTACCATTGTCGGCGATCG
GCGCCCGCTTTATGCGCTCCTCGTACCAGTGCCCATCCGCCCATCCAAAC
TAAGGAGCAGTAGGCTGTCATATTCCTGGTACCGGCTCTATCGTGGTGCG
AATCCCGACTCCTAAATGGCCACCTCAGGCGACATCACTCGCGCCACAGT
GCGCTTGAAGCGGTGTTTCAACTTTATAAAGGTACCGCTTATTTTTTATC
TTTCCGTCGGCGCCGGGCGCATCGCAAACGGTGCACCACACCGCGAGCAA
TCGGCGTCGAGGCCGCCAACAAACCTAACAACAGACGGACATCCTCGCCG
AAGTGCACCCTGCCGGGAAAAAAAACGCACGCCTTCCACGCGACCCCAAT
ATGAAAGGAATTGCACTCCGCCTAACCGGCGTTTGCCCCCTCCAATATAA
GCACTTTCTGAAGGGCGGGCTTCCGTGTTGGTGCCCGAAACCCGCAAGAG
CAGGGTCACCTCTTTAGCGCTTTCACCCGCTTCTGTTCTTTTCTTTTGCG
CAAACACTCGTGTCAGAGTTATGTAGGGTCATCTCTTTGAACTATTTCCC
ACTCACCTATTCACTTTTCTTAGCACAAACACCTGCGCAAGAGCTAAGTA
GGGTCGCCTCTTTAGCTCTCTCCATTCGCTCCTCTGTTCTTTCCATCCAC
ACTCGTGAAAGCGCTAGCCTTCTGCTTGCAAAAACAGCCGGTACCTGCCT
GGCCACTACCCTAACCAGCCTATGCCGAGCTACGACACCTTGACCCACTT
TCCCGCCCCCCCCCCCACATGTGCAATATAGCTAGCGCCCCCGCTTTTGT
TTTTCATTATTTGATGTGATAACCACTAATACGAGAACACTAAATTCTTA
AATGGGATAGCCACTAATACGAGAGCATGCCATCAAACTAGTTGAAAAAC
GCTCAATCTCACACACGTGCGATTGTACCTCGTTACACCTCGACCCAAAC
AAACACCCACAGGCGTACCCGGTGATGGCGGTCATCGGCATCGGCTTCGT
CTTCCCGCTCTTCTGGGGCCTCAAGACCATGGGCACCAACCCGGATGTGC
ACGTCAGCCGCACCAGCCGAAAGACTGTCCTCCGCCACGAGGAGTGATAG
CGCCTTCTGGCCACAGGACTGCCCGTTTGCAGGTGTACAAGAAAAGAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:2535237..2540285+

>mRNA_S-ischiensis_contig12.2717.1 ID=mRNA_S-ischiensis_contig12.2717.1|Name=mRNA_S-ischiensis_contig12.2717.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=960bp|location=Sequence derived from alignment at S-ischiensis_contig12:2535237..2540285+ (Schizocladia ischiensis KU_0333)
ATGCGATGTGATGTGATGTGTACTCTAAGTCACTGCAGTCTCACATCACT
AGCCGTAACTAACATCACATCACATTGCACCACATTGCGAAAGCCCTTCC
TTGGCCCGCCTTTTGACTTCACAGGGCGAATAGTTAAAGATAGCCAGGGG
AAGACGGACAAGAGGACGGGACTGGGGCTGGGGCTGGGCACTCTCATCTT
GTTCTTCTTTGCTTCCTGCGATGGCCACTGCGAGCCCCCCGGTGGACGCC
CTTCGCGTCGTCAGCTGTTCGGAACAGGATGCGATGTGATGTGATGTGTA
CTCTAAGTCACTGCAGTCTCACATCACTAGCCGTAACTAACATCACATCA
CATTGCACCACATTGCGAAAGCCCTTCCTTGGCCCGCCTTTTGACTTCAC
AGGGCGAATAGTTAAAGATAGCCAGGGGAAGACGGACAAGAGGACGGGAC
TGGGGCTGGGGCTGGGCACTCTCATCTTGTTCTTCTTTGCTTCCTGCGAT
GGCCACTGCGAGCCCCCCGGTGGACGCCCTTCGCGTCGTCAGCTGTTCGG
AACAGGTTCGCCAGCCGTTCGTCAGATGTCCTCCAATAAGTCATTCAAGG
ACGCCTGGCTCTCGGACGTGGGGTTCGCCAGCCGTTCGTCAGATGTCCTC
CAATAAGTCATTCAAGGACGCCTGGCTCTCGGACGTGGGGGCGTACCCGG
TGATGGCGGTCATCGGCATCGGCTTCGTCTTCCCGCTCTTCTGGGGCCTC
AAGACCATGGGCACCAACCCGGATGTGCACGTCAGCCGCACCAGCCGAAA
GACTGTCCTCCGCCACGAGGAGTGAGCGTACCCGGTGATGGCGGTCATCG
GCATCGGCTTCGTCTTCCCGCTCTTCTGGGGCCTCAAGACCATGGGCACC
AACCCGGATGTGCACGTCAGCCGCACCAGCCGAAAGACTGTCCTCCGCCA
CGAGGAGTGA
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