mRNA_S-ischiensis_contig12.2711.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2711.1
Unique NamemRNA_S-ischiensis_contig12.2711.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:2460663..2462638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size786
Cds size579
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2711.1prot_S-ischiensis_contig12.2711.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 2460663..2462431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.5657003-CDS-S-ischiensis_contig12:2460662..24610771622815635.5657003-CDS-S-ischiensis_contig12:2460662..2461077Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2460663..2461077 -
1695739818.393168-CDS-S-ischiensis_contig12:2460662..24610771695739818.393168-CDS-S-ischiensis_contig12:2460662..2461077Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2460663..2461077 -
1622815635.5834484-CDS-S-ischiensis_contig12:2462267..24624311622815635.5834484-CDS-S-ischiensis_contig12:2462267..2462431Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2462268..2462431 -
1695739818.4041047-CDS-S-ischiensis_contig12:2462267..24624311695739818.4041047-CDS-S-ischiensis_contig12:2462267..2462431Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2462268..2462431 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.5968313-UTR-S-ischiensis_contig12:2462431..24626381622815635.5968313-UTR-S-ischiensis_contig12:2462431..2462638Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2462432..2462638 -
1695739818.4127228-UTR-S-ischiensis_contig12:2462431..24626381695739818.4127228-UTR-S-ischiensis_contig12:2462431..2462638Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2462432..2462638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2711.1

>prot_S-ischiensis_contig12.2711.1 ID=prot_S-ischiensis_contig12.2711.1|Name=mRNA_S-ischiensis_contig12.2711.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=193bp
MDTHMPSSLEGHVPGAVNRGHRSLPAAARRPGVAMPARFWVLLAGVGLVL
APTLLLTQSPLHLNFDHGPGGADGRGEEGADPCGGGATEACRIPQLPQAT
RGALGGGEGGAAAVAAATAASSALPGEQPPTSFAAPAAAAEAAAADGQRA
PLSAAALGPGLGGAAAAAAAAPLHSSSPLPGGRGGGALPLSPS
back to top

mRNA from alignment at S-ischiensis_contig12:2460663..2462638-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2711.1 ID=mRNA_S-ischiensis_contig12.2711.1|Name=mRNA_S-ischiensis_contig12.2711.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1976bp|location=Sequence derived from alignment at S-ischiensis_contig12:2460663..2462638- (Schizocladia ischiensis KU_0333)
CTGCAGTGCGGTTTGTCGTTGGAAGAACAACAACTCACGCTTGTGGTGGT
GGGGCTTTACCTTGGGCTTGGGCGAGGGGCGATGGGGTTGGATCCTCGCC
GTGCTTGGCGACCGCTGCGATGACACCGGGGGACCTTGACGGGGAGTCGT
TGCCCAGCGCGTTCGCTCCGTTCCTAGAAGGGCTGGCGGGGGGGCCACAC
CACCCCGATGGACACACACATGCCCTCCTCGCTTGAGGGACATGTGCCAG
GAGCTGTGAACCGAGGTCACCGTTCTCTACCGGCAGCGGCTCGCAGGCCT
GGGGTGGCCATGCCCGCGCGTTTTTGGGTGTTGCTCGCGGGCGTCGGCTT
GGTGCTTGCCCCCACCCTCCTGTGAGTTGACGACACTCCCCTCTTTCTCT
GCAGCTGCTGTAGTGAATTCCTGGGGCTCCGTTCTTGTACTTTCGTCGAC
TGCGGTGTCTCGTATCCGTTGCTAAAACAACCCTTCTGTGAGCTGTAACA
TGTTGTAGTACGTGTTGCTGGGTTCACCATGTAGAGCTATTGCATCACTG
AAATTCTTTTTTTTCCAGGTTCTCCCAGAGCCAAAGAGGCAGCTCACCAC
CTCTCGTCGTCATGCTGCCCCCCCCGTTCCTCTCAGCCGGCCCCCCAACG
CCAGACCGACCAATCCCGTTAGGGGTACCCCCCGTCAAGTTTGGAGGGTA
TTTAAATGGTACTTGCAGCTACTGTAGGGCTGAGCTACAACTGTGATGGA
TATGCTACGTTGCATTCAGGGAGTGCGGTGTTCGTTCAAGGCAGGCACGT
TGCAAAGAAACTGGCCGATAACTTCGAGTTGAGTTAACGGTCCGGCTAGG
TTCAACTACACTACTGCTGGTCTACACACAGGGTTGCGATATCGACGCGG
ACTGACGCATTTGTCGGACATCCGGTTTCCGGTTCCGGGGGTGGAAAGAA
TGGAATTTTTCCAAACTTCTCATCACGGTGTCCGCACTTTTTTTTGTTAC
ACTGTTTCGTTATGACCAATTGGGCGCTCGTTTTTTGTTTGACCGTTTCA
TAGTAACTGTATCGCCGTGAATTTCGCAAGTGACCTACTGTACTTGTGTC
TTTCGGGCGCGCTGAATTGCCCGCTTGAAATGGCCTCTAAAAAGTGGTGT
ATAGCCGGACTGGTATTCGATTGGGAAATACTTAACCCTTTTACCCCTGG
GGTCCGTACAATCATAGGGTTTTAGTGTGCAAGTCCAATTTACCAGGGGT
AAAAGGGTTGGGCGGCGAGCTCCGGGCCCCACGACTCTGTCCCAACCCAT
GGGAATCAGCAGAAGACCTGCTGCATCTGTTGATGCATCCAATAGCACGC
ACAACCTCGCCCCCCATGGGAACCGTGGTCAATGTTCATTTTCGGCCGCT
GCAACAAGCAACTCGTGAGCACGAACCCGCCCTGCCCTCCCAATGTCCAT
TTTCTCGATCGCTGCAAGCAACTCATGAGCACCCCCCGCCGCCCCTACTC
AACGTCCCACGACCGTATACCCCACGCACGCGCGGGCTTGCGCGGCCGGC
CACACGTGCAGCCTGACACAATCACCCTTGCACCTGAATTTCGACCACGG
GCCCGGCGGTGCCGACGGCCGGGGGGAGGAGGGCGCGGACCCTTGCGGCG
GCGGCGCCACGGAGGCTTGCCGCATCCCACAGCTGCCGCAGGCGACACGT
GGCGCGCTAGGTGGAGGGGAAGGAGGAGCAGCAGCAGTAGCAGCAGCAAC
AGCAGCCTCATCAGCTCTTCCGGGAGAACAACCACCCACCTCTTTCGCCG
CCCCTGCTGCCGCCGCAGAGGCGGCGGCAGCAGACGGGCAACGGGCACCA
CTGTCTGCCGCAGCACTTGGCCCCGGACTTGGCGGCGCCGCCGCCGCCGC
CGCTGCCGCCCCCCTCCACAGCAGCAGCCCTCTGCCTGGAGGCCGCGGGG
GGGGGGCTCTCCCGCTTTCACCTTCA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig12:2460663..2462638-

>mRNA_S-ischiensis_contig12.2711.1 ID=mRNA_S-ischiensis_contig12.2711.1|Name=mRNA_S-ischiensis_contig12.2711.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1158bp|location=Sequence derived from alignment at S-ischiensis_contig12:2460663..2462638- (Schizocladia ischiensis KU_0333)
ATGGACACACACATGCCCTCCTCGCTTGAGGGACATGTGCCAGGAGCTGT
GAACCGAGGTCACCGTTCTCTACCGGCAGCGGCTCGCAGGCCTGGGGTGG
CCATGCCCGCGCGTTTTTGGGTGTTGCTCGCGGGCGTCGGCTTGGTGCTT
GCCCCCACCCTCCTATGGACACACACATGCCCTCCTCGCTTGAGGGACAT
GTGCCAGGAGCTGTGAACCGAGGTCACCGTTCTCTACCGGCAGCGGCTCG
CAGGCCTGGGGTGGCCATGCCCGCGCGTTTTTGGGTGTTGCTCGCGGGCG
TCGGCTTGGTGCTTGCCCCCACCCTCCTCCTGACACAATCACCCTTGCAC
CTGAATTTCGACCACGGGCCCGGCGGTGCCGACGGCCGGGGGGAGGAGGG
CGCGGACCCTTGCGGCGGCGGCGCCACGGAGGCTTGCCGCATCCCACAGC
TGCCGCAGGCGACACGTGGCGCGCTAGGTGGAGGGGAAGGAGGAGCAGCA
GCAGTAGCAGCAGCAACAGCAGCCTCATCAGCTCTTCCGGGAGAACAACC
ACCCACCTCTTTCGCCGCCCCTGCTGCCGCCGCAGAGGCGGCGGCAGCAG
ACGGGCAACGGGCACCACTGTCTGCCGCAGCACTTGGCCCCGGACTTGGC
GGCGCCGCCGCCGCCGCCGCTGCCGCCCCCCTCCACAGCAGCAGCCCTCT
GCCTGGAGGCCGCGGGGGGGGGGCTCTCCCGCTTTCACCTTCACCTGACA
CAATCACCCTTGCACCTGAATTTCGACCACGGGCCCGGCGGTGCCGACGG
CCGGGGGGAGGAGGGCGCGGACCCTTGCGGCGGCGGCGCCACGGAGGCTT
GCCGCATCCCACAGCTGCCGCAGGCGACACGTGGCGCGCTAGGTGGAGGG
GAAGGAGGAGCAGCAGCAGTAGCAGCAGCAACAGCAGCCTCATCAGCTCT
TCCGGGAGAACAACCACCCACCTCTTTCGCCGCCCCTGCTGCCGCCGCAG
AGGCGGCGGCAGCAGACGGGCAACGGGCACCACTGTCTGCCGCAGCACTT
GGCCCCGGACTTGGCGGCGCCGCCGCCGCCGCCGCTGCCGCCCCCCTCCA
CAGCAGCAGCCCTCTGCCTGGAGGCCGCGGGGGGGGGGCTCTCCCGCTTT
CACCTTCA
back to top