mRNA_S-ischiensis_contig12.2627.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2627.1
Unique NamemRNA_S-ischiensis_contig12.2627.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig12.2627.1 vs. uniprot
Match: A0A835Z533_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z533_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.250e-24
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  217 FPGKLFAILSFESPDIVAWTHSGLAFCLRDPHRFKREVLPKYFKHDRLASFQRQLNLYGFRFHKTSEGPEKGCYMHPAFQRGRPDLLPGVNR 492
            FP  L+ IL  E+P+++ WT +G AF ++D  RF+ +VLP +FKHD+ +SFQRQLNLYGFR  K   G E G YMH  FQRGR DLLP V R
Sbjct:    2 FPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFR--KIVRGKEAGGYMHKDFQRGRADLLPHVRR 91
[Close]
BLAST of mRNA_S-ischiensis_contig12.2627.1 vs. uniprot
Match: A0A835Z0U6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.250e-24
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:  208 PSSFPGKLFAILSFESPDIVAWTHSGLAFCLRDPHRFKREVLPKYFKHDRLASFQRQLNLYGFRFHKTSEGPEKGCYMHPAFQRGRPDLLPGVNR 492
            P+ FP  L +IL  ES DI+ W+ SG +F +R+ + FK ++LP+YFKHD+ +SFQRQLNLYGFR  K  +G E GCY+H  F+RG P+LL  V R
Sbjct:    1 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFR--KIVKGNESGCYIHTYFRRGHPELLKQVRR 93
[Close]
BLAST of mRNA_S-ischiensis_contig12.2627.1 vs. uniprot
Match: A0A835YGA3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGA3_9STRA)

HSP 1 Score: 117 bits (292), Expect = 8.260e-24
Identity = 64/114 (56.14%), Postives = 76/114 (66.67%), Query Frame = 1 
Query:  193 GKRGCPSSFPGKLFAILSFESPDIVAWTHSGLAFCLRDPHRFKREVLPKYFKHDRLASFQRQLNLYGFRFHKTSEGPEKGCYMHPAFQRGRPDLLPGVNRAPARDVPAPQGAAR 534
            GKRG P +F  KLF +LS ESPDIV+WT SGLAF + D  +F  E L KYFKH+  ASFQRQLNLYGFR  K+ +G + G + H +FQR RP+LL  V R     V A Q A R
Sbjct:   21 GKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFR--KSLKGEDSGGFQHASFQRDRPELLIEVRRT----VQASQAAKR 128
[Close]
BLAST of mRNA_S-ischiensis_contig12.2627.1 vs. uniprot
Match: A0A812YT23_SYMMI (HSF2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YT23_SYMMI)

HSP 1 Score: 112 bits (281), Expect = 2.050e-23
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:  211 SSFPGKLFAILSFESPDIVAWTHSGLAFCLRDPHRFKREVLPKYFKHDRLASFQRQLNLYGFRFHKTSEGPEKGCYMHPAFQRGRPDLLPGVNRAPAR 504
            S+FP KLFA++  E  D+V WT  GL+F + DP +F  EV+PKYF+H ++ SFQRQLNLYGFR  + ++G + G Y HP FQRGR D +  + R P +
Sbjct:   11 SNFPQKLFALMEMEPADVVCWTERGLSFRVVDPEKFAEEVVPKYFRHTKMTSFQRQLNLYGFR--RVTKGEDTGSYYHPKFQRGRRDFISEIKRLPGK 106
[Close]
BLAST of mRNA_S-ischiensis_contig12.2627.1 vs. uniprot
Match: A0A835YN41_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN41_9STRA)

HSP 1 Score: 109 bits (272), Expect = 9.550e-23
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:  208 PSSFPGKLFAILSFESPDIVAWTHSGLAFCLRDPHRFKREVLPKYFKHDRLASFQRQLNLYGFRFHKTSEGPEKGCYMHPAFQRGRPDLLPGVNR 492
            P+ FP  L +IL  ESP+I+ W+ +G AF +R+   FK ++LP+YFKHD+ +SFQRQLNLYGFR  K  +G E GCY+H  FQRG P+LL  V R
Sbjct:   21 PAGFPYVLISILENESPEIITWSSTGRAFGIRNMAAFKTKILPQYFKHDKFSSFQRQLNLYGFR--KIVKGRESGCYIHCYFQRGHPELLKQVRR 113
[Close]
BLAST of mRNA_S-ischiensis_contig12.2627.1 vs. uniprot
Match: A0A6V2VRS5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2VRS5_HETAK)

HSP 1 Score: 112 bits (279), Expect = 1.070e-22
Identity = 64/156 (41.03%), Postives = 85/156 (54.49%), Query Frame = 1 
Query:  193 GKRGCPSSFPGKLFAILSFESPDIVAWTHSGLAFCLRDPHRFKREVLPKYFKHDRLASFQRQLNLYGFRFHKTSEGPEKGCYMHPAFQRGRPDLLPGVNRAPARDVPAPQGAARNLKKRRKRPHSNRDSVTEQPTTPRAVGCASWDLLAVQELPVG 660
            G RG P  F  KL+ IL  ES D++ W   G AF ++D  RF +EVL KYF+H+  +SFQRQ+NLYGF+  K S GP  G  MH  F RGRPDLL  V R P    P P   + +       P S + +  +   +P++     W+    Q+L VG
Sbjct:   14 GSRGAPQVFARKLYQILLTESKDVICWNEPGTAFFIKDMDRFSQEVLMKYFRHNNYSSFQRQMNLYGFK--KISRGPFAGANMHQQFLRGRPDLLVMVKRKPRSSSPFPSSRSVSPVP----PSSRKAASRKSSKSPKSASPTPWN----QKLSVG 159
[Close]
BLAST of mRNA_S-ischiensis_contig12.2627.1 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.250e-22
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:  193 GKRGCPSSFPGKLFAILSFESPDIVAWTHSGLAFCLRDPHRFKREVLPKYFKHDRLASFQRQLNLYGFRFHKTSEGPEKGCYMHPAFQRGRPDLLPGVNRAP 498
            G+RG P  FP KL+ ILS E  DI+ WT SG +F +++   F   +L KYF+H + +SFQRQLNLYGFR  K  +G + G Y H  F R +P+LL  V R P
Sbjct:    7 GRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFR--KVQKGTDVGSYAHECFIRDQPELLTKVRRIP 106
[Close]
BLAST of mRNA_S-ischiensis_contig12.2627.1 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 110 bits (275), Expect = 4.370e-22
Identity = 53/109 (48.62%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:  193 GKRGCPSSFPGKLFAILSFESPDIVAWTHSGLAFCLRDPHRFKREVLPKYFKHDRLASFQRQLNLYGFRFHKTSEGPEKGCYMHPAFQRGRPDLLPGVNRAPARDVPAP 519
            G+RG P +F  KL+ IL  E  D+++W  +G AF +RD  RF +E+L KYF+H + ASFQRQLNLYGFR  K + G + G Y H  F++G+PDLL  V R+ +   P+P
Sbjct:    7 GQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFR--KITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSSSPSP 113
[Close]
BLAST of mRNA_S-ischiensis_contig12.2627.1 vs. uniprot
Match: A0A7S2GMP7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GMP7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.960e-22
Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 1 
Query:  193 GKRGCPSSFPGKLFAILSFESPDIVAWTHSGLAFCLRDPHRFKREVLPKYFKHDRLASFQRQLNLYGFRFHKTSEGPEKGCYMHPAFQRGRPDLLPGVNRAPARDVPA 516
            GKRG P +FP KLF ILS E  DI+ WT SGL+F + D   F   +L KYF+H + +SFQRQLNLYGFR  K + GP+ G Y H  F + R +LL  V R P    P+
Sbjct:    1 GKRGAPQAFPRKLFEILSNEPIDIICWTESGLSFIITDMETFVTSILMKYFRHQKYSSFQRQLNLYGFR--KVNMGPDAGAYAHDCFLKNRGELLGKVRRMPQASSPS 106
[Close]
BLAST of mRNA_S-ischiensis_contig12.2627.1 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.600e-21
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:  154 AMESPSAMQDVNEGKRGCPSSFPGKLFAILSFESPDIVAWTHSGLAFCLRDPHRFKREVLPKYFKHDRLASFQRQLNLYGFRFHKTSEGPEKGCYMHPAFQRGRPDLLPGVNRAP 498
            A  +PS  +    G+RG P  FP KL+ IL+ E  D++ WT SG +F + +   F  E+L  YF+H + +SFQRQLNLYGFR  K  +GP+ G Y H  F R +P+ L  V R P
Sbjct:   86 AAPAPSTQKYPRTGRRGAPQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFR--KIQKGPDTGAYAHEHFLRDQPESLTFVRRMP 198
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z533_9STRA3.250e-2456.52HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A835Z0U6_9STRA3.250e-2453.68HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A835YGA3_9STRA8.260e-2456.14HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A812YT23_SYMMI2.050e-2351.02HSF2 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A835YN41_9STRA9.550e-2354.74HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A6V2VRS5_HETAK1.070e-2241.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BSE7_9STRA2.250e-2249.02Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6V1QFS1_HETAK4.370e-2248.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2GMP7_9STRA5.960e-2250.93Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2G7U9_9STRA3.600e-2144.35Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:1403688..1410468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog2850.Phatr42714
KEGG koko:K09419
EggNOG free text desc.heat shock factor
EggNOG OGs2XG5V@2836,COG5169@1,KOG0627@2759
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons4
Model size2530
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2627.1prot_S-ischiensis_contig12.2627.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 1405387..1410312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.6923568-UTR-S-ischiensis_contig12:1403687..14053861622815649.6923568-UTR-S-ischiensis_contig12:1403687..1405386Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1403688..1405386 -
1695739827.4235814-UTR-S-ischiensis_contig12:1403687..14053861695739827.4235814-UTR-S-ischiensis_contig12:1403687..1405386Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1403688..1405386 -
1622815649.7458336-UTR-S-ischiensis_contig12:1410312..14104681622815649.7458336-UTR-S-ischiensis_contig12:1410312..1410468Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1410313..1410468 -
1695739827.4926987-UTR-S-ischiensis_contig12:1410312..14104681695739827.4926987-UTR-S-ischiensis_contig12:1410312..1410468Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1410313..1410468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.7030282-CDS-S-ischiensis_contig12:1405386..14057191622815649.7030282-CDS-S-ischiensis_contig12:1405386..1405719Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1405387..1405719 -
1695739827.4501483-CDS-S-ischiensis_contig12:1405386..14057191695739827.4501483-CDS-S-ischiensis_contig12:1405386..1405719Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1405387..1405719 -
1622815649.7147133-CDS-S-ischiensis_contig12:1407254..14074131622815649.7147133-CDS-S-ischiensis_contig12:1407254..1407413Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1407255..1407413 -
1695739827.4637835-CDS-S-ischiensis_contig12:1407254..14074131695739827.4637835-CDS-S-ischiensis_contig12:1407254..1407413Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1407255..1407413 -
1622815649.726299-CDS-S-ischiensis_contig12:1408931..14090771622815649.726299-CDS-S-ischiensis_contig12:1408931..1409077Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1408932..1409077 -
1695739827.472253-CDS-S-ischiensis_contig12:1408931..14090771695739827.472253-CDS-S-ischiensis_contig12:1408931..1409077Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1408932..1409077 -
1622815649.735982-CDS-S-ischiensis_contig12:1410275..14103121622815649.735982-CDS-S-ischiensis_contig12:1410275..1410312Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1410276..1410312 -
1695739827.4805043-CDS-S-ischiensis_contig12:1410275..14103121695739827.4805043-CDS-S-ischiensis_contig12:1410275..1410312Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1410276..1410312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2627.1

>prot_S-ischiensis_contig12.2627.1 ID=prot_S-ischiensis_contig12.2627.1|Name=mRNA_S-ischiensis_contig12.2627.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=225bp
MESPSAMQDVNEGKRGCPSSFPGKLFAILSFESPDIVAWTHSGLAFCLRD
PHRFKREVLPKYFKHDRLASFQRQLNLYGFRFHKTSEGPEKGCYMHPAFQ
RGRPDLLPGVNRAPARDVPAPQGAARNLKKRRKRPHSNRDSVTEQPTTPR
AVGCASWDLLAVQELPVGSDCSEDSEDSELKTAGTVAVEPEAIKHEQYGS
EVGVLCMAESAVPANPMPVPSAPR*
back to top

mRNA from alignment at S-ischiensis_contig12:1403688..1410468-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2627.1 ID=mRNA_S-ischiensis_contig12.2627.1|Name=mRNA_S-ischiensis_contig12.2627.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6781bp|location=Sequence derived from alignment at S-ischiensis_contig12:1403688..1410468- (Schizocladia ischiensis KU_0333)
CGAGTACTTGGAAGATGCACCCTGCAGGTGTGACGGTGGCACCTGCAACG
ACAACACCGACTACTGTAGGAGTATAAGATGTGGTGGGGTGGATAGCGAG
GGCCCTCAAGTGGACTTCAGGCCCTGGCGGTCCACGCCTTAACCGCGCCC
GGGGCCATGGAGTCCCCCTCGGCCATGCAAGACGTAAACGAAGGTGAGCT
TTGCCGACAGCGTTCATCAGGGACGTGTACTGCGGACTGCTTTTTCCCCT
GCGAAGACTCAGCCCCGGAGAGAGGGTCAACTTCGCGTTATGGTTCGGCG
GAGCTGTGCAGGTCGACAAGCATGTGAACATGCCTGCGGACCAGCTCCAT
TGTCCGTCAGTGTGCAAAGGGCTCGCCTCTCTACCAGGGCTGCCTCTTGC
CAGTATTCCAGCCAAATACGAAGTACGAACTAGGGCATACATGTGTTGCT
TACAAGGGTGGATTTGTTTGACTGTGCAGTGCACCCGCGGTGATGGGTTC
GGCCCCCCACCGCCAATCCGAACACCACAGCTGCATGCCTACGAAAACAC
CCGTGTCGCACGGTTGTCTGCGTGGCCTGCCCATCTCATAACCTTCCGCA
TCTGGCATCTAGGAGAGCGGGTGCAAAGAGCTTTCCCCCCAAAGGTGGCC
ATTTTGTCCGTTCCTGCTCCATGTGCACGGCCTGGCCGGTGCCAACCCGG
CATGCTCCATCCCTGCCTAATTGGGACGCGAGAGTCCATGGCTAAATAGC
TACTCCTGTCGGAGGGCAAACCCGAAGTTTCGACTTAGGGCTGTCGGCAT
TGCACGCAAGGTTATGTCGCAAGACAAGCCACCGAGTACATATATATATA
TATATATATATATATATATATATGTACATATATGCGCCTAAACGGCAGCA
TAGCCGTGGCCTACGGAGGTTCTCACTTCTGCTGGAAGGAAGGCGGTTGC
GCTAGCCTTCCCCTACGTCGCTGGATGCTTGGGCATGTGCCTTCAGGGTT
GGCACTTAACCCCTAAGTGGTGCCCTTTCAGGCCCTTAGTTAGAGGTAAT
TTGGGGTAACTAGACCTAAAATGAAGCCTAATATATATACTCGTATACGA
GGCGCGGGGTCAATGGTCCCGGGACGTGAGTACATATATATATATGTACT
CATTGGCTTGTCTTGCGACACAACCGTGCGTGCAATGCCGAAAGCCCTCA
GTCAAAACTTCGGGTTTGCCCTCCGACAGGAGTAGCTATATATATGTAGT
ACATGTACTCGTCGGCTTGTCTTGCGACACAACCTTGCGTGAAATGCCGA
CAGCCCTAAGTCGAAACTTCGGGTTTTAGGCCCAAATTAACCTCTAAATT
CCAGCCCTGCGTGCCTTGCCTAATAATAATCTCTGCGGCAGGCAAACGCG
GCTGCCCGAGCAGTTTCCCCGGGAAGCTGTTTGCCATTCTGAGTTTCGAG
TCCCCGGACATTGTCGCCTGGACTCACTCCGGCCTGGCCTTCTGCTTGAG
AGACCCGCACCGCTTCAAACGGGAAGTGCTCCCCAAGGTGTGATGCAGTG
TGCGTACGATTTATATATATATATATCGATGGATCGTCGTAGATTTGAAG
TCACTCTATTTTCTAGCAGTTGGAAACTACTCGAAAATTGACTCATCAGT
TTAAAATCAAGTAGTCGAAACTACATGAAAATAGACTCGCGAACTGCTTG
AGAATAGACTGACCAGTCTAAAATCAAGTCGTCGAAACTACTTGAAAATA
GTCCCCAGACATTGTCGCCTGGACTCGCTCTGGCCTGGCCTTCTGCTTGC
GAGACCCGCACCGCTTCCAAGGGGAAGTGCTCCCCAAGGTGTGATGCAGT
GCGCATACGGTTTCTATATATTTATATATCGATGGACCGTCGTAGATTTG
AAGTCGGTCTATTTTCAAGCAGTTGCACACTACTTGAAAATTGACTGATC
AGTCTAAAATCAAGTACTGTAGTTGAAACAACTTGAAAATAGACCGTAAA
CTACTTGAAAGTAGACTGATCAGTCTAAAATCAACTACTGTAGTTGGAAC
TACTTGAAAATAGCCCCACATTCTAAAATCAAGTAGTCGAAACTATTTGA
AAGCCCCGTGTTCTTCCTTACAGGCCACCGTTCGGCTTTCCAGCTCTAAC
CCCGGAACAAATGCGAATTGGCGCGTGAAAATTCGTGCGTCGTCTGGTGT
TACCGTCGCGGACACATTGGCAAGTTTTTCCTGCTGCGGTTCGAAGTGGT
TCCCGAGAACCTGCTGACCGGTGGCCACCGCTCAAGGTAAGTTTCCCACC
CCCCGCCTCGCGTAGAACGCCTCACTTCAAGTTCGTGGATTTTGAGAATG
CCATCCGCCTCACTTCAAGTTCGTGGATTTTGAAATTGCCATCCGGCAAG
GTGTACTCTAGAAGCAAGATCCCCAGTACCCAGGCATTTCAAGCATGGTT
GTACTGACACCCCCTTCGTCGCTGTTGCTATGGACTCGTATGGGCATATA
TAACCTCAAGCACGACCATGTGGCCTCCTTCCGGCGCCAACTCAACCTGT
ACTCGAGTATGGGTTCAGGTTCCACAAGTAGGCAAATTCAAACGCAAATT
CAAACACACCTTGTACCGAACCCCCTGCAATGGTATATTGTCATATACCC
CTGCTGCATCACTGCTGCCTTGCACGACCGATTGGCCTCCTTCCAGTGCC
AGCTCAACCTCTATGGGTTCAGGTTCCACAAGTGGGCAATTCAAGCACAC
TTGTTCTGACTGACGGGCAATTCAAGCACACTTGTACTGACTGACACCCC
CTGCTGCGTCGCTGTTGCCATGCATGGCAGTACTTCAAGCACGACCGCCT
GATCTCCTTCCAGCGCAAACCCAACCTGTACGGGTTCAAACCCCACAAGT
GTGTGTGCACTCGTGGCTGTTAGGTCACAAGTACATCGATTTATTTCAAG
CATACCTGGTACTGACACCCCCTACGTCGCTCGAGTACATAGATAATTCA
AGCACACTTTTGTACTGACTGACACCCCCTGCATCACTGTTGCCATGCAT
GGCAGTACTTCAAGCACGACCGTTTGGCCTCCTTCCAGCGACAACTCAAC
CTGTACGGGTTCAGGTTCCACAAGACCAGCGAGGGGCCCGAGAAGGGCTG
CTACATGCACCCCGCCTTCCAGCGGGGGCGCCCAGACCTCCTGCCGGGGG
TAAACCGAGCACCGGTGCGTGCGTGCGTGCCTACGTGCATGACTTGCCTG
CGTGTGTGACAGTGTGCGCTATAGACATTTTATATGAGTTCAGTGAATTT
TAGTACGCTCTTCACTGAGTGTACAATGCTTCCAGCGGGGGCGCCCGGAC
CTCCTGTCGGGGTACACCGAGCACCGGTGCGTGCGTGCCTGCATGCGCGT
ATGACAGTGTGCACTATTTGTGTGTGCGTGCGCACGTGCGTGGTTTTTTG
TGGTAGCGGCGTCACCATGATGTATACGAGTGTGAGTAAATATATATACT
TCGTCGAGGTATATACGTGGAGAGAGAGAACAGGGGCAGACAGACAGACA
GACTGGCAGGGAGGTGTTCTACACGAGGGGGGGGGGGCAAATCGCCCGGT
TCCTGACATGCCACCGCTTCGGCCTTACAGCTCCAACTCGAGAAGAAATG
CGAATTGGCGCGTGAAAAATGTGACGTCGTCTGGTCGTATCGTCATGCAC
ACGTTGGCAAAGTTTCGTGCTGCAATTCGAAGTGGTTCCCGATAACAGGG
TGAGCGGCGGCCGCCGCTCATGTAAGGTTCCCACCCCCCGCCTCGCGTAG
AACGCTTCAGATGATACAATTATCGCTCAGCGAGGGCTGCGGACTCAGGG
TGGCAACGACTACCGTAATCGTCGGAGAGGTCTTGCCCCCCCATGCCAAT
TTTCGGCAGAGTTTTTCTTGCCGAATACTGGTCGGATTCACGCAGGAACA
CTCGGAAAAACTCCCTCAGGAGCTGAGGGGACTTTTCCGAGGGGTTGAGG
TCGCCCGAAAGTTGGCCCGTGGGGGCAAAATCTCTCTGACGATTACGGTA
ATCAAATCCACTTCCAGTCACAGTGTCAAGGCACCGTTGCGGTTACAGTG
GCGCTGCGGCCGAACTGGCCCCCGGGCCCACATAGTATCAACTTGCTGCA
ACCTGGTCCCGGCGCCCCGCCCCTGCCCGTGTCCCCCCAAAATGTGTCAT
GTTTTAAGGCGTTTGAAAGGACGATCATGAGTCGTGCTACGATTGGGGGG
GGGGTCCTTTGTTGCACAAGTGTTTCGGCTAGACCCTTCCGCGAAAGTGG
CAGGACTCGCCCCCACGTGAAAGTGGCAATGAGATAAGTGTCCGTGATTT
GCTGCCCCGTAGTCTTACCAAGAGGGGCCTCCCATGTGCAGTTTTGGGAG
ACTACCGGTCAGTGGAATCTCCCGAAAACTGCTTCCAAATATTCAGCGGG
GAGGGCTGTTTGGCCGTACACCCCTGCAACAAAGGGGCTCATACTGCCCC
CCCGCAATCGTAGCAGGACTCTCATGGCTTCCTCCGCCGTCGCCGCCGCC
GCTGTCAAACGCGAGGGTGCCGCGTCACCACGACATACCCTCAGCGCCGC
ATGCGCCGTATGCGCCGCGCAGCAGCGAGTGGTTTTCTGGAGAGTGAATT
AGATTTGCTCCTGCAATATCCAGTCGCACAGCCACAAAGCTTGACAGCCG
CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCGACTCGCAGG
CGCGAGACGTCCCTGCTCCCCAGGGGGCCGCTCGGAACTTGAAAAAGCGG
AGAAAGCGGCCCCACTCCAACCGCGACTCGGTCACCGAACAACCCACCAC
GCCTCGGGCTGTGGGCTGTGCGAGTTGGGACCTGTTGGCAGTGCAGGAAT
TGCCAGTGGGGAGCGACTGCAGCGAGGACTCGGAGGACTCGGAACTGAAA
ACGGCGGGCACGGTCGCGGTCGAGCCCGAGGCGATCAAGCACGAGCAGTA
TGGCTCGGAGGTTGGTGTGCTATGTATGGCCGAGTCGGCGGTGCCCGCAA
ATCCGATGCCAGTGCCTTCGGCCCCACGCTGAGTCACTAATTCCCAAACA
TTCAATTCTTACACGGGACAACTACTAATACGAGAACACTCGATCTCACA
CACGCGCGATTGTACCTCGTTACTATTTATGTGAAGCACGCCACGCTGTG
AATCCGATGGGCTACTTATTGCGCCCAGATGTTGGCAGTTTGTGGCTGGT
GCGTCTTGCCCGATGGTAAAATTCATGTGTGAGTTGCGTTCACTTTCAAA
CTTGACTGTTTCCTCACGATCAAGCCCTGTGTTTCATCACAGAACCCAGC
GGACCCGGTGCAGTCACGGTGTACTTTATACTTTAAGGATTAAGCCTCAC
TCGGCTTACTAGGCATTGTCAGCCACTTGAGGCGTATGCACATAGGAGTA
CTTCCAAGTACTTCGTATGTACGGCAGACCTGCAGTGCTGTCGTTCTCTC
TGCCAGGGTTGAGTCATCGTCACTTGGCTCACCAGACTTGTGTCTAATGC
ATGTGTGCTACTTGCATGCAGAGGATTACATTGCATGCTGCAGCTCAGCT
CGCGTGTGACAATGAAACGCGGGACACCCTGTAAACGACGCGAATCCCCA
CGACCGGCTGAGTTGGCTTTTCGGTCGCCGTCAGAGATGCCGCAAATCAG
AATGTTACGGGCTGCCCAAAGTGGTCCGGTAGCCGTATGAGAGCCGAGAA
GATTGGGAGACGCCAAAAGGTTTCGGGAGAGCTCAAAGATTGTACAGCGA
GCGCGTGCGGGCACCTGTGTGTGGTGGGTGCTTGCCTGAAAACGTCGACC
TGTCACGACGACCTGCTGGTATGTACGTACGCCGTGCAAGGCTGTGAAAA
CGTCGCGCCACTAGAGTGACAAGTAGTGTGCGCGCGCGGAACCGCGGCGC
CTGCGGTGAGGAACTTCCAGTTGGCGTCGTGCGTCGCCTCGAAACAACAC
TGCCACCAGCGGCGAGGGATAGAGGACACTAGACCCGTGGTTAGGGGCTA
TTGGCTAGGCTTGCAAGGGTCGTGCAGAGTAAGTCCCGCTGAGTTGAAGT
TGGGTACGGTTGCAGCTGAAATTATGCTGGCAGATGTGCGTGCGTGTCGG
CCGGTCGTACGGCATCCCCATGCTGGAGGTGTGTCAAAGGCGGCACACGC
TAGCGAAGCGGAGGTCCCGTAGCGGTCGCGGGAGTCCTTTGGTCTAGTCG
CCCTCGGAAAAAGATCAAATTGACAGATTGTAGGATCCGCTTCGTGAGCC
GAGGCCGCGGTGCGGCCCGGGCCGCAAAATGGCTGCTGCCATGGAAGCCT
CGGGCACCGCCAATGGGTTTGGCGGCTGGGTAGACATTCCTGTGCGCCTC
AAGGGCCAGCGCAGCTTGGGCGTTTTGCTGCAGGCGAGATCCGAGTCGGT
CGCGCGTGGTCGTACTGTAGAACTGAACCCTAATATTCCACCCACTCAAG
GGCAAAAGAAGCAGAGGTATCTGAGGGTTGTATATGCATTTGTGCACTCA
TTCACTCATCTTTGGAAGCACTCTTCACCAGTATGGTGCTCACAGCCCTA
AAGCTTCGCATACCTGTGCTGCAGCGGGCCGGGCACAGTGGCCACCGGTT
CGCTGGCCGGGGTACGGGGCGCAGTTTGCGCGTGCTGCAGCCTCTTTGGG
ACAGCATGTGTGTGCTCACGTTCGGACGAGTTTTCTCGTCTCTGTGCACG
CCCTGGACCCGAACGATCGCGGTCTTCTCTC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig12:1403688..1410468-

>mRNA_S-ischiensis_contig12.2627.1 ID=mRNA_S-ischiensis_contig12.2627.1|Name=mRNA_S-ischiensis_contig12.2627.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1350bp|location=Sequence derived from alignment at S-ischiensis_contig12:1403688..1410468- (Schizocladia ischiensis KU_0333)
ATGGAGTCCCCCTCGGCCATGCAAGACGTAAACGAAGATGGAGTCCCCCT
CGGCCATGCAAGACGTAAACGAAGGCAAACGCGGCTGCCCGAGCAGTTTC
CCCGGGAAGCTGTTTGCCATTCTGAGTTTCGAGTCCCCGGACATTGTCGC
CTGGACTCACTCCGGCCTGGCCTTCTGCTTGAGAGACCCGCACCGCTTCA
AACGGGAAGTGCTCCCCAAGGCAAACGCGGCTGCCCGAGCAGTTTCCCCG
GGAAGCTGTTTGCCATTCTGAGTTTCGAGTCCCCGGACATTGTCGCCTGG
ACTCACTCCGGCCTGGCCTTCTGCTTGAGAGACCCGCACCGCTTCAAACG
GGAAGTGCTCCCCAAGTACTTCAAGCACGACCGTTTGGCCTCCTTCCAGC
GACAACTCAACCTGTACGGGTTCAGGTTCCACAAGACCAGCGAGGGGCCC
GAGAAGGGCTGCTACATGCACCCCGCCTTCCAGCGGGGGCGCCCAGACCT
CCTGCCGGGGGTAAACCGAGCACCGTACTTCAAGCACGACCGTTTGGCCT
CCTTCCAGCGACAACTCAACCTGTACGGGTTCAGGTTCCACAAGACCAGC
GAGGGGCCCGAGAAGGGCTGCTACATGCACCCCGCCTTCCAGCGGGGGCG
CCCAGACCTCCTGCCGGGGGTAAACCGAGCACCGGCGCGAGACGTCCCTG
CTCCCCAGGGGGCCGCTCGGAACTTGAAAAAGCGGAGAAAGCGGCCCCAC
TCCAACCGCGACTCGGTCACCGAACAACCCACCACGCCTCGGGCTGTGGG
CTGTGCGAGTTGGGACCTGTTGGCAGTGCAGGAATTGCCAGTGGGGAGCG
ACTGCAGCGAGGACTCGGAGGACTCGGAACTGAAAACGGCGGGCACGGTC
GCGGTCGAGCCCGAGGCGATCAAGCACGAGCAGTATGGCTCGGAGGTTGG
TGTGCTATGTATGGCCGAGTCGGCGGTGCCCGCAAATCCGATGCCAGTGC
CTTCGGCCCCACGCTGAGCGCGAGACGTCCCTGCTCCCCAGGGGGCCGCT
CGGAACTTGAAAAAGCGGAGAAAGCGGCCCCACTCCAACCGCGACTCGGT
CACCGAACAACCCACCACGCCTCGGGCTGTGGGCTGTGCGAGTTGGGACC
TGTTGGCAGTGCAGGAATTGCCAGTGGGGAGCGACTGCAGCGAGGACTCG
GAGGACTCGGAACTGAAAACGGCGGGCACGGTCGCGGTCGAGCCCGAGGC
GATCAAGCACGAGCAGTATGGCTCGGAGGTTGGTGTGCTATGTATGGCCG
AGTCGGCGGTGCCCGCAAATCCGATGCCAGTGCCTTCGGCCCCACGCTGA
back to top