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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 1192 |
| Cds size | 612 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815638.6370692-UTR-S-ischiensis_contig12:1163948..1164484 | 1622815638.6370692-UTR-S-ischiensis_contig12:1163948..1164484 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 1163949..1164484 + |
| 1695739819.9093893-UTR-S-ischiensis_contig12:1163948..1164484 | 1695739819.9093893-UTR-S-ischiensis_contig12:1163948..1164484 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 1163949..1164484 + |
| 1622815638.667029-UTR-S-ischiensis_contig12:1165096..1165140 | 1622815638.667029-UTR-S-ischiensis_contig12:1165096..1165140 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 1165097..1165140 + |
| 1695739819.928176-UTR-S-ischiensis_contig12:1165096..1165140 | 1695739819.928176-UTR-S-ischiensis_contig12:1165096..1165140 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 1165097..1165140 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815638.6494048-CDS-S-ischiensis_contig12:1164484..1165096 | 1622815638.6494048-CDS-S-ischiensis_contig12:1164484..1165096 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 1164485..1165096 + |
| 1695739819.9199626-CDS-S-ischiensis_contig12:1164484..1165096 | 1695739819.9199626-CDS-S-ischiensis_contig12:1164484..1165096 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 1164485..1165096 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig12.2601.1 >prot_S-ischiensis_contig12.2601.1 ID=prot_S-ischiensis_contig12.2601.1|Name=mRNA_S-ischiensis_contig12.2601.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=204bp
MRPSFMAAENDRWKMTFSRPVPAGHEPCCVFAQRILWWPKMPFLILTPVC
VLLGRHPRGIFPPRRILRGRGVDPAPTPSGVAGLHYTNQKPPPGPQCARG
GIRVLPSPRCPVARARCRPLNCLCHVFVIFWRPGSPSWICTAFPAEIALF
GPQPKMTTKEIAGNDRKSAHKVRRQKLHCRKTTKCKNGRTFPAAIKDGLM
GQS* back to topmRNA from alignment at S-ischiensis_contig12:1163949..1165140+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig12.2601.1 ID=mRNA_S-ischiensis_contig12.2601.1|Name=mRNA_S-ischiensis_contig12.2601.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1192bp|location=Sequence derived from alignment at S-ischiensis_contig12:1163949..1165140+ (Schizocladia ischiensis KU_0333)
AGGCGTTCAAGGTGAAGAAACCTGGGCCAAGGAGGCCCTGGGATGGTTGA
TGTACTGCAGTGCAGTTGTAGAGCAGGTACCGTTATCGTCGGAGAGATCT
TGCCCCCCCATGCCAATCTTCGGGAGAAACTTTTCTCGCCGAGAACTGGT
CGGATTCGCGTGGGAAAACTCGGAAAATCTCCCTCAGGACGGTGAGGGAA
CCTTTCCGCGGGCTTTCGGGACAATTCAGGACCTTCCCGGCGAGAATATT
CCCCCGAAAATTGGCCCGTGAGGGCAAAATCTCTACGACGATTAGGTCGG
TAGAATGCGTCGAAACTTCTGGAAACCTCGGCCACCGCGGACTCGGGGGG
GGTTCAGGATTCCTCGCCCTGTATCCGCGCGAACAGAGCGATCACGCGAG
TCAACGTGCGCGCATGGGCTCGGCGGCCGTGGCCAACAAGTTTGTGATGG
TTCCGCACTTTTACGTTTACCGTTGATCGTCGTCGGCCAAGACACCTTGG
ACCAGTTCAACGTTATCACGCCACGGCGAACAACAGATGAGGCCGTCTTT
TATGGCAGCCGAAAACGACCGCTGGAAAATGACATTTTCCCGTCCGGTGC
CCGCTGGTCATGAACCTTGCTGCGTGTTTGCCCAGCGCATTTTATGGTGG
CCAAAAATGCCATTTCTGATTTTGACGCCAGTGTGCGTATTGTTAGGAAG
GCATCCGCGAGGGATTTTCCCACCGAGGCGGATTTTGCGTGGGCGAGGAG
TTGACCCAGCCCCGACGCCGTCGGGGGTGGCCGGGCTCCACTACACGAAC
CAGAAGCCACCACCGGGGCCGCAGTGCGCCCGCGGGGGTATCCGTGTGCT
GCCTAGCCCTCGGTGCCCAGTGGCTCGTGCCCGGTGCCGCCCACTCAATT
GTCTCTGTCATGTTTTTGTCATTTTCTGGCGGCCGGGGTCGCCCAGCTGG
ATTTGCACTGCATTTCCGGCCGAAATCGCGCTTTTCGGGCCCCAGCCGAA
AATGACGACAAAAGAAATCGCCGGGAATGACAGAAAAAGTGCACATAAGG
TGCGCCGGCAGAAACTGCACTGCCGGAAAACGACAAAATGCAAAAACGGG
CGAACATTTCCGGCTGCCATAAAAGACGGCCTGATGGGGCAATCGTGACC
TTCATTTGCGACGTGCAGAGCCCAGTGGGGGGGGGCGAGGGA back to topCoding sequence (CDS) from alignment at S-ischiensis_contig12:1163949..1165140+ >mRNA_S-ischiensis_contig12.2601.1 ID=mRNA_S-ischiensis_contig12.2601.1|Name=mRNA_S-ischiensis_contig12.2601.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1224bp|location=Sequence derived from alignment at S-ischiensis_contig12:1163949..1165140+ (Schizocladia ischiensis KU_0333)
ATGAGGCCGTCTTTTATGGCAGCCGAAAACGACCGCTGGAAAATGACATT
TTCCCGTCCGGTGCCCGCTGGTCATGAACCTTGCTGCGTGTTTGCCCAGC
GCATTTTATGGTGGCCAAAAATGCCATTTCTGATTTTGACGCCAGTGTGC
GTATTGTTAGGAAGGCATCCGCGAGGGATTTTCCCACCGAGGCGGATTTT
GCGTGGGCGAGGAGTTGACCCAGCCCCGACGCCGTCGGGGGTGGCCGGGC
TCCACTACACGAACCAGAAGCCACCACCGGGGCCGCAGTGCGCCCGCGGG
GGTATCCGTGTGCTGCCTAGCCCTCGGTGCCCAGTGGCTCGTGCCCGGTG
CCGCCCACTCAATTGTCTCTGTCATGTTTTTGTCATTTTCTGGCGGCCGG
GGTCGCCCAGCTGGATTTGCACTGCATTTCCGGCCGAAATCGCGCTTTTC
GGGCCCCAGCCGAAAATGACGACAAAAGAAATCGCCGGGAATGACAGAAA
AAGTGCACATAAGGTGCGCCGGCAGAAACTGCACTGCCGGAAAACGACAA
AATGCAAAAACGGGCGAACATTTCCGGCTGCCATAAAAGACGGCCTGATG
GGGCAATCGTGAATGAGGCCGTCTTTTATGGCAGCCGAAAACGACCGCTG
GAAAATGACATTTTCCCGTCCGGTGCCCGCTGGTCATGAACCTTGCTGCG
TGTTTGCCCAGCGCATTTTATGGTGGCCAAAAATGCCATTTCTGATTTTG
ACGCCAGTGTGCGTATTGTTAGGAAGGCATCCGCGAGGGATTTTCCCACC
GAGGCGGATTTTGCGTGGGCGAGGAGTTGACCCAGCCCCGACGCCGTCGG
GGGTGGCCGGGCTCCACTACACGAACCAGAAGCCACCACCGGGGCCGCAG
TGCGCCCGCGGGGGTATCCGTGTGCTGCCTAGCCCTCGGTGCCCAGTGGC
TCGTGCCCGGTGCCGCCCACTCAATTGTCTCTGTCATGTTTTTGTCATTT
TCTGGCGGCCGGGGTCGCCCAGCTGGATTTGCACTGCATTTCCGGCCGAA
ATCGCGCTTTTCGGGCCCCAGCCGAAAATGACGACAAAAGAAATCGCCGG
GAATGACAGAAAAAGTGCACATAAGGTGCGCCGGCAGAAACTGCACTGCC
GGAAAACGACAAAATGCAAAAACGGGCGAACATTTCCGGCTGCCATAAAA
GACGGCCTGATGGGGCAATCGTGA back to top
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