mRNA_S-ischiensis_contig12.2595.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2595.1
Unique NamemRNA_S-ischiensis_contig12.2595.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig12.2595.1 vs. uniprot
Match: D7FVL0_ECTSI (Putative transmembrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL0_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 2.160e-59
Identity = 110/224 (49.11%), Postives = 147/224 (65.62%), Query Frame = 3 
Query:  183 LKSASEVLEFWLG-DMERYTTDPEYKAVKDKQWWAG--KDEEFNDVQMASADLISAASSGKLTGEEWESPAGTLARIIILDQFPRTVSRGTREAFAGDEKAAALSLSFVSEGWDESLA---TLTEKHFCYMPLMHSEKLELQDKCVECLTRLVEANVEDTASGKYARFILDFAKEHRDIVKRFGRFPHRNALLGRVSTEEEEAWLSSDDLPEFAKSQMTPQPSA 836
            LK+A +V++FW G D+ R  +D EY      +W+     D+ F   Q AS +L++ A SG+L GEEWE+  G LAR+++LDQFPRTV RGT +AFA DE AA+LSL  +S+GWD   A   T  ++ F Y+PLMHSE++E QD  V  +  LV+  ++ T S      + D A EHR +V +FGRFPHRNA LGR ST EE  WLSSDD+P +AKSQ   +PS+
Sbjct:   15 LKTAQDVVDFWFGTDLARLASDKEYGQSFGAKWFGAGPPDQAFIGTQNASKELVAKAGSGELKGEEWETSKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATGSAN--SLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQSASEPSS 236
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BLAST of mRNA_S-ischiensis_contig12.2595.1 vs. uniprot
Match: A0A6H5KSE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE8_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 9.740e-59
Identity = 111/224 (49.55%), Postives = 149/224 (66.52%), Query Frame = 3 
Query:  183 LKSASEVLEFWLG-DMERYTTDPEYKAVKDKQWWA--GKDEEFNDVQMASADLISAASSGKLTGEEWESPAGTLARIIILDQFPRTVSRGTREAFAGDEKAAALSLSFVSEGWDESLA---TLTEKHFCYMPLMHSEKLELQDKCVECLTRLVEANVEDTASGKYARFILDFAKEHRDIVKRFGRFPHRNALLGRVSTEEEEAWLSSDDLPEFAKSQMTPQPSA 836
            LK+A +V++FW G D+ R  +D EY      +W+     D+ F   Q AS +L++ A SG+L GEEWE+P G LAR+++LDQFPRTV RGT +AFA DE AA+LSL  +S+GWD   A   T  ++ F Y+PLMHSE++E QD CV  +  LV+  ++  A+G     + D A EHR +V +FGRFPHRNA L R ST EE  WLSSDD+P +AKSQ   +PS+
Sbjct:   85 LKTAQDVVDFWFGTDLVRLASDREYGQSFGAKWFGVGPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFAHDETAASLSLEIISKGWDTVDARNYTFQQRLFVYLPLMHSERIEAQDACVSKVKALVDDEMK--ATGSADSLVHDMALEHRGVVAKFGRFPHRNAALRRESTPEELQWLSSDDIPGWAKSQGASEPSS 306
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BLAST of mRNA_S-ischiensis_contig12.2595.1 vs. uniprot
Match: A0A835Z6H1_9STRA (Putative transmembrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H1_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.430e-42
Identity = 94/216 (43.52%), Postives = 125/216 (57.87%), Query Frame = 3 
Query:  183 LKSASEVLEFWLGD-MERYTTDPEYKAVKDKQWWAG-KDEEFNDVQMASADLISAASSGKLTGEEWESPAGTLARIIILDQFPRTVSRGTREAFAGDEKAAALSLSFVSEGWDESLATLTEKHFCYMPLMHSEKLELQDKCVECLTRLVEANVEDTASGKYARFILDFAKEHRDIVKRFGRFPHRNALLGRVSTEEEEAWLSSDDLPEFAKSQMTP 824
            L    +VL FW GD     T     +  + K W+ G  DE F+ +Q+ + DLI  A++G   G EW+ P  TLARII+LDQF RT  R T +AF  DE AA +S + +  G DE   T  E+ F Y+PLMHSE++E Q  C+  +T      +ED          + FA  H  +V++FGRFPHRNA +GR ST EE AWL+SD LP +A+SQ  P
Sbjct:   10 LHLLQDVLTFWFGDDAAALTAGSPARGYRFKLWFGGANDERFDALQVEAKDLIQQAAAG---GPEWDGPRNTLARIIVLDQFSRTAYRATAQAFERDEMAADISAAAIDAGSDEQF-TPYERLFFYLPLMHSERMEYQRLCLAKVTST--PGLEDC---------IAFANSHLVVVEQFGRFPHRNAAMGRTSTPEELAWLASDKLPGWARSQAPP 210
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BLAST of mRNA_S-ischiensis_contig12.2595.1 vs. uniprot
Match: A0A7R9UCH7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCH7_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.230e-41
Identity = 92/215 (42.79%), Postives = 121/215 (56.28%), Query Frame = 3 
Query:  195 SEVLEFWLGDMERYTTD------PEYKAVKDKQWWAGKDEEFNDVQMAS-ADLISAASSGKLTGEEWESPAGTLARIIILDQFPRTVSRGTREAFAGDEKAAALSLSFVSEGWD-ESLATLTEKHFCYMPLMHSEKLELQDKCVECLTRLVEANVEDTASGKYARFILDFAKEHRDIVKRFGRFPHRNALLGRVSTEEEEAWLSSDDLPEFAKSQ 815
            ++VL FW GD   Y  D      P Y   ++ +WW G  E   D Q  S ADL+ AA +GKL GEEWE P G +AR+++ DQ  R   RGT EAFA DE A  LS+  +  G D   + T  E+ F Y+ LMHSE  E  + C+      +E   E  A     RF + F + H D++KRFGR+PHRN  LGR +T EE  +L+ DDLP + +SQ
Sbjct:   39 ADVLRFWFGD--EYFEDREALSRPGYMESQNDRWWMGGPE--MDAQCESFADLVRAAGAGKLVGEEWEEPNGKVARVLLCDQIARGAFRGTTEAFAYDEVACGLSMQAIENGEDMPGILTFAERWFLYVALMHSENAETHELCLARFHSYLEHYPELEAD---VRFGIGFEEAHYDVIKRFGRYPHRNKALGRENTPEETEFLAQDDLPAWMRSQ 246
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BLAST of mRNA_S-ischiensis_contig12.2595.1 vs. uniprot
Match: UPI00196A8BBE (DUF924 family protein n=1 Tax=Amphritea spongicola TaxID=707589 RepID=UPI00196A8BBE)

HSP 1 Score: 152 bits (385), Expect = 1.370e-38
Identity = 90/197 (45.69%), Postives = 119/197 (60.41%), Query Frame = 3 
Query:  198 EVLEFWLGDMERYTTDPEYKAVKDKQWWAGKDEEFNDVQMASADLISAASSGKLTGEEW-ESPAGTLARIIILDQFPRTVSRGTREAFAGDEKAAALSLSFVSEGWDESLATLTEKHFCYMPLMHSEKLELQDKCVECLTRLV-EANVEDTASGKYARFILDFAKEHRDIVKRFGRFPHRNALLGRVSTEEEEAWLS 782
            E+L FW GD+      P+ K    K WW G +E    ++ A    +  A +G+L  ++W   P G LA II+LDQF R + RG+ EAF+GD KAAALS   +  G D +L  L+EK F YMPL H+E LE QD+ + CL  L  E  +E       A   LDFA EHR+++ RFGRFP+RNA+LGR ST EE A+L+
Sbjct:    7 EILHFWFGDLYDGLATPDRK----KLWWYGGEEVDGLIRDAFGQRVRQALAGEL--DDWARQPRGRLALIILLDQFSRNIYRGSAEAFSGDSKAAALSKEGIELGHDRALE-LSEKLFFYMPLEHAESLEEQDQHISCLESLFGEMGIEHRQVLDNA---LDFAHEHRELIARFGRFPYRNAVLGRESTPEELAYLN 193
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BLAST of mRNA_S-ischiensis_contig12.2595.1 vs. uniprot
Match: A0A7G5ED99_9BURK (DUF924 domain-containing protein n=1 Tax=Comamonas piscis TaxID=1562974 RepID=A0A7G5ED99_9BURK)

HSP 1 Score: 151 bits (382), Expect = 4.520e-38
Identity = 84/206 (40.78%), Postives = 122/206 (59.22%), Query Frame = 3 
Query:  171 APAGLKSASEVLEFWLGDMERYTTDPEYKAVKDKQWWAGKDEEFND-VQMASADLISAASSGKLTGEEWESPA-GTLARIIILDQFPRTVSRGTREAFAGDEKAAALSLSFVSEGWDESLATLTEKHFCYMPLMHSEKLELQDKCVECLTRLVEANVEDTASGKYARFILDFAKEHRDIVKRFGRFPHRNALLGRVSTEEEEAWLS 782
            AP+ + SA EVL+FWLG      ++    A++ KQ W  K +E +  ++      + AA +G+L G  W      TLARI++LDQF R + RGT E+FAGD  A  L+L     G D+ L  +  + F Y+PL H+E   LQ + V+  ++L +AN E      Y +   D+A  H+ ++ RFGRFPHRNA+LGR STEEE+A+L+
Sbjct:    6 APSPIASADEVLQFWLGAARPSNSE----ALQHKQQWFSKSDELDARIRQRFEPAVQAALTGRLNG--WSGGVWDTLARILLLDQFTRNIYRGTPESFAGDPLALQLALGLCDSGQDQELPAVL-RVFVYLPLEHAEDRALQQRSVDLFSQLRDANPEPAELQTYLQGTWDYALRHQAVIARFGRFPHRNAILGRSSTEEEQAYLA 204
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BLAST of mRNA_S-ischiensis_contig12.2595.1 vs. uniprot
Match: A0A0G4FWM7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FWM7_VITBC)

HSP 1 Score: 150 bits (379), Expect = 2.100e-37
Identity = 93/218 (42.66%), Postives = 118/218 (54.13%), Query Frame = 3 
Query:  189 SASEVLEFWLGDM-ERYTTDPEYKAVKDKQ----WWAGKDEEFNDVQMASADLISAASSGKLTGEEWESPAGTLARIIILDQFPRTVSRGTREAFAGDEKAAALSLSFVSEGWDESLATLTEKHFCYMPLMHSEKLELQDKCVECLTRLVEANVEDTASGKYARFILDFAKEHRDIVKRFGRFPHRNALLGRVSTEEEEAWLSSDDLPEFAKSQMTPQ 827
            S S +L FW G M +    DP +  V   +    W       F      SA LI+A S+G + G+EW S  G LA++I+LDQF R++ RGTREAF  DE+A  LS   V  G    L    +K F  MPLMHSE L+ QD  V  LT       E + S    R  +DFAK HRD+V RFGR P RN  L R ST EE AW  SD++P++  +Q+  Q
Sbjct:    8 SPSSILHFWFGSMCDTELRDPSHCGVLTTRGCCSWGFNPLPSFEKALQESAHLITAVSNG-VGGDEWTSAFGLLAQVIVLDQFTRSIHRGTREAFQHDERAVELSRQMVDSGLLHQLKGW-QKQFAVMPLMHSECLDDQDLLVSLLT-------EWSKSEPLFRRQIDFAKAHRDVVGRFGRRPQRNFALNRESTAEELAWFVSDEMPQWCVTQIPKQ 216
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BLAST of mRNA_S-ischiensis_contig12.2595.1 vs. uniprot
Match: UPI001BEC4E75 (DUF924 family protein n=3 Tax=Neptunomonas phycophila TaxID=1572645 RepID=UPI001BEC4E75)

HSP 1 Score: 147 bits (372), Expect = 7.660e-37
Identity = 84/198 (42.42%), Postives = 116/198 (58.59%), Query Frame = 3 
Query:  198 EVLEFWLGDMERYTTDPEYKAVKDKQ--WWAGKDEEFNDVQMASADLISAASSGKLTGEEW-ESPAGTLARIIILDQFPRTVSRGTREAFAGDEKAAALSLSFVSEGWDESLATLTEKHFCYMPLMHSEKLELQDKCVECLTRLVEANVEDTASGKYARFILDFAKEHRDIVKRFGRFPHRNALLGRVSTEEEEAWLS 782
            EVL+FW GD++      E   V DK   WW G  E    +    A+ +  A  G L  + W E+P G LA I++LDQF R + RG+  AF+GD +A A++   +  G+D++L   TE+ F YMPL H+E L  QD  V C+  L  A +     G +   +LDFA +HRD++KRFGRFPHRN  L R STE+E A+L+
Sbjct:    7 EVLQFWFGDLK------EGFPVADKSTLWWGGSQEIDQQITELFANRVRQALQGTL--DSWKETPRGRLALILLLDQFTRNIYRGSGAAFSGDAQALAITQESIQLGYDQALE-FTERLFLYMPLEHAESLPAQDLSVSCMAELT-AQIPVDRRGMFEN-VLDFAVQHRDVIKRFGRFPHRNQALERESTEDELAYLN 193
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BLAST of mRNA_S-ischiensis_contig12.2595.1 vs. uniprot
Match: UPI001EFB12F1 (DUF924 domain-containing protein n=1 Tax=Comamonas sp. B21-038 TaxID=2918299 RepID=UPI001EFB12F1)

HSP 1 Score: 147 bits (371), Expect = 1.360e-36
Identity = 82/204 (40.20%), Postives = 121/204 (59.31%), Query Frame = 3 
Query:  177 AGLKSASEVLEFWLGDMERYTTDPEYKAVKDKQWWAGKDEEFND-VQMASADLISAASSGKLTGEEWESPA-GTLARIIILDQFPRTVSRGTREAFAGDEKAAALSLSFVSEGWDESLATLTEKHFCYMPLMHSEKLELQDKCVECLTRLVEANVEDTASGKYARFILDFAKEHRDIVKRFGRFPHRNALLGRVSTEEEEAWLS 782
            A + S+ EVL+FWLG     T     +A++ KQ W  K + F+  ++      + AA SG+L G  W      TLARI++LDQF R + RGT ++FAGD +A  L+L     G D+ L  +  + F Y+PL H+E   LQ + V+  TRL +++ E      Y +   D+A  H+D++ RFGRFPHRNA+LGR ST +E+A+L+
Sbjct:    8 APIASSDEVLQFWLGS----TRPSNGEALQHKQQWFSKSDAFDARIRERFGTTVQAALSGELPG--WTDGVWDTLARILLLDQFTRNIYRGTPQSFAGDPQALQLALGLCDSGLDQQLPAVV-RVFVYLPLEHAEDAVLQQRSVDLFTRLRDSHPEPAELQTYLQGTWDYALRHQDVIARFGRFPHRNAVLGRSSTAQEQAYLA 204
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BLAST of mRNA_S-ischiensis_contig12.2595.1 vs. uniprot
Match: UPI001C0E2D97 (DUF924 family protein n=1 Tax=Achromobacter sp. GG226 TaxID=2779529 RepID=UPI001C0E2D97)

HSP 1 Score: 154 bits (388), Expect = 2.090e-36
Identity = 90/197 (45.69%), Postives = 119/197 (60.41%), Query Frame = 3 
Query:  198 EVLEFWLGDMERYTTDPEYKAVKDKQWWAGKDEEFN-DVQMASADLISAASSGKLTGEEWES-PAGTLARIIILDQFPRTVSRGTREAFAGDEKAAALSLSFVSEGWDESLATLTEKHFCYMPLMHSEKLELQDKCVECLTRLVEANVEDTASGKYARFILDFAKEHRDIVKRFGRFPHRNALLGRVSTEEEEAWLS 782
            +VL+FW    E     PEY  V++   W  KD  F+ +++     LI  A +G L   +WE  P G LARI+ILDQF R   R T +AFAGD +A AL+L  +  GWD ++  + ++ F Y+PLMH+E LE+Q +CVE L R + A     AS       LDFA+ HRDIV RFGRFPHRNA LGR +T EE  +L+
Sbjct:  258 DVLDFWFHAPEH----PEYLTVREA--WFRKDASFDAEIRTRFGPLIDGALAGGL--RDWEGVPDGALARILILDQFTRNTLRDTADAFAGDVQALALALQVIDAGWDVAMPPV-QRQFVYLPLMHAEDLEIQQRCVE-LYRALAAQAPSLASA------LDFARRHRDIVARFGRFPHRNAALGRDTTAEEAEFLT 438
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVL0_ECTSI2.160e-5949.11Putative transmembrane protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KSE8_9PHAE9.740e-5949.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6H1_9STRA2.430e-4243.52Putative transmembrane protein n=1 Tax=Tribonema m... [more]
A0A7R9UCH7_9STRA1.230e-4142.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
UPI00196A8BBE1.370e-3845.69DUF924 family protein n=1 Tax=Amphritea spongicola... [more]
A0A7G5ED99_9BURK4.520e-3840.78DUF924 domain-containing protein n=1 Tax=Comamonas... [more]
A0A0G4FWM7_VITBC2.100e-3742.66Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
UPI001BEC4E757.660e-3742.42DUF924 family protein n=3 Tax=Neptunomonas phycoph... [more]
UPI001EFB12F11.360e-3640.20DUF924 domain-containing protein n=1 Tax=Comamonas... [more]
UPI001C0E2D972.090e-3645.69DUF924 family protein n=1 Tax=Achromobacter sp. GG... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:1110448..1119008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue2.9e-51
Seed eggNOG ortholog2880.D7FVL0
EggNOG free text desc.Bacterial protein of unknown function (DUF924)
EggNOG OGs2S80R@2759,COG3803@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size2843
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2595.1prot_S-ischiensis_contig12.2595.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 1112446..1118877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.6976988-UTR-S-ischiensis_contig12:1110447..11124451622815647.6976988-UTR-S-ischiensis_contig12:1110447..1112445Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1110448..1112445 -
1695739825.9876223-UTR-S-ischiensis_contig12:1110447..11124451695739825.9876223-UTR-S-ischiensis_contig12:1110447..1112445Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1110448..1112445 -
1622815647.7765458-UTR-S-ischiensis_contig12:1118877..11190081622815647.7765458-UTR-S-ischiensis_contig12:1118877..1119008Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1118878..1119008 -
1695739826.070279-UTR-S-ischiensis_contig12:1118877..11190081695739826.070279-UTR-S-ischiensis_contig12:1118877..1119008Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1118878..1119008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.7120786-CDS-S-ischiensis_contig12:1112445..11125721622815647.7120786-CDS-S-ischiensis_contig12:1112445..1112572Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1112446..1112572 -
1695739825.9992974-CDS-S-ischiensis_contig12:1112445..11125721695739825.9992974-CDS-S-ischiensis_contig12:1112445..1112572Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1112446..1112572 -
1622815647.7255445-CDS-S-ischiensis_contig12:1113123..11132511622815647.7255445-CDS-S-ischiensis_contig12:1113123..1113251Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1113124..1113251 -
1695739826.0096242-CDS-S-ischiensis_contig12:1113123..11132511695739826.0096242-CDS-S-ischiensis_contig12:1113123..1113251Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1113124..1113251 -
1622815647.7375968-CDS-S-ischiensis_contig12:1113762..11139131622815647.7375968-CDS-S-ischiensis_contig12:1113762..1113913Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1113763..1113913 -
1695739826.0232356-CDS-S-ischiensis_contig12:1113762..11139131695739826.0232356-CDS-S-ischiensis_contig12:1113762..1113913Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1113763..1113913 -
1622815647.747441-CDS-S-ischiensis_contig12:1115961..11160511622815647.747441-CDS-S-ischiensis_contig12:1115961..1116051Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1115962..1116051 -
1695739826.0368996-CDS-S-ischiensis_contig12:1115961..11160511695739826.0368996-CDS-S-ischiensis_contig12:1115961..1116051Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1115962..1116051 -
1622815647.7571914-CDS-S-ischiensis_contig12:1117692..11178411622815647.7571914-CDS-S-ischiensis_contig12:1117692..1117841Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1117693..1117841 -
1695739826.052391-CDS-S-ischiensis_contig12:1117692..11178411695739826.052391-CDS-S-ischiensis_contig12:1117692..1117841Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1117693..1117841 -
1622815647.7668195-CDS-S-ischiensis_contig12:1118808..11188771622815647.7668195-CDS-S-ischiensis_contig12:1118808..1118877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1118809..1118877 -
1695739826.062109-CDS-S-ischiensis_contig12:1118808..11188771695739826.062109-CDS-S-ischiensis_contig12:1118808..1118877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1118809..1118877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2595.1

>prot_S-ischiensis_contig12.2595.1 ID=prot_S-ischiensis_contig12.2595.1|Name=mRNA_S-ischiensis_contig12.2595.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=238bp
MSDPLPGGLEPGDAPAGLKSASEVLEFWLGDMERYTTDPEYKAVKDKQWW
AGKDEEFNDVQMASADLISAASSGKLTGEEWESPAGTLARIIILDQFPRT
VSRGTREAFAGDEKAAALSLSFVSEGWDESLATLTEKHFCYMPLMHSEKL
ELQDKCVECLTRLVEANVEDTASGKYARFILDFAKEHRDIVKRFGRFPHR
NALLGRVSTEEEEAWLSSDDLPEFAKSQMTPQPSATA*
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mRNA from alignment at S-ischiensis_contig12:1110448..1119008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2595.1 ID=mRNA_S-ischiensis_contig12.2595.1|Name=mRNA_S-ischiensis_contig12.2595.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8561bp|location=Sequence derived from alignment at S-ischiensis_contig12:1110448..1119008- (Schizocladia ischiensis KU_0333)
GAGCGTCGGGTGCACCGCAGGTGGAGGCACTTCACTTGCCACGCTTGCCT
CTGGGTTGAGGCCCGAGCACAAGCCGTCGGATTCTCCTGATCGTCTTCTT
CCAGGGCTGTTCGTGGACTGGCCGTTGCAGCATGTCGGACCCTCTACCAG
GCGGTTTGGAGCCGGGGGATGCGCCTGCAGGCCTCAAGTCAGCGTCCGAG
GTGGGACACCATTCAATAAGTGATGTGGATTGACCTGCGGTGGTTTGTCT
TTTCCAGGCTCACATTGGCGGGCGTTTGCACTGTTTGAATACGAGTACTA
TACAGCTCTACTTGCTGTATCACCCATTGCACTCAGAGGAATATACGCCC
GGGGCGTTGGTCACCTGGAACGCTGTTGTCTTGACCTGCACGAACAGGGT
GGCACTTAGGGGTTAATTAGGGCCTAGTTAGCCTTAATTCTAGGTCTAAT
TACCCCGAATTACCTCTAATTAAGGGCCTGAAAGGGCACCAGTTAGGGGT
TAAATGCAACCCTGAGCTGGAACACTCCTGTCTTGACCTGCACGAATGCA
CTGCCATGGTGACAAACTATCCACTGCTGCAGATGCTTGGGTTCTGGTTT
GGGAACATGCACGACAGAAATACACACGTTGGTCAGCTGGGACACACCTG
TCTTGACCTGCGCGAGTGCGCTGCCATGCACGGCAAACTATCCACTGTGA
TAGTCACTAATATAAGAACACTCAATTCTGAAATGGGACAACTACTACTG
CAATGCGAGAACAGTCAATCTCACACACGTGCGATTGTACCTCGTTTCAA
TTTATAGGAATCACTATCCGCTGCTGCAGGTGCTTGGGTTCTGGTTTGGG
GACATGGAGCGCTATGCCACCGACCCATGAGAGGAATATACACGTTGGTC
AGCTGGAACGCTCCTGTCTTGACCTGCACGATTGCGCTGCCATGCACTGC
AAACTATCCGCTGCAGGCAGGGTTGGCACTTAGCCCCTAAGTGGTGCCCT
TTTAGGCCCTTAACTAGAGATAATCAGGGGTAATTTGACCTAAAATGAAG
GCTAATATATATCACGTGGTGCTTGCCGCAGTCCCGAGACCATTGACCGC
GCGCCTCGGTCGAGACGGAGCAGGATTTAGGCCCTAATTCACCTCTAAGA
GCCAACCCTGGCTGCAGGTGCTTGAGTTCTGGCTTGGGGACATGGAGCGT
TACACCACCGACCCGGAGTACAAGGCGGTCAAGGACAAGCAGTGGTGGGC
CGGGAAGGACGAGGAGTTCAATGATGTGCAAATGGCGTCCGCTGATCTGA
TATCAGCAGCTAGCAGGTGCGTGGGTGGGTGAGTGCGGCCACGCTAGTCG
GTGGGAGGCCCAATTTTCCCACGTATCAGGTATGGTGCAACCCACATGTT
CTGTCGGTGAAGTACCCGGCATGCTCCGTCCAATAGGACGCGTGGCCAAT
GGCTTCAGCTACAGCTGGCCAGCGATCCACGAGAAGGAGCAAAGATGAGG
ATCGTTCGGGTCCAGGGCATGCACAGCGACGAGAAACCTCGTTCAAACGT
GAGTACGCACATATGTATGCCACATGAGGCTGACTGTGCTCTTTCTTCGT
AGTATGCTGCTGGGAGGCCAACTATGCTAAAATAGTTCTGGCGCTTTAAC
CCTTTCACCCCTGGGGTCCGTGGAATCATAGGGTTTTAGTGTGTAAGTCC
AATTTAGCAGGGGCAAAAGGGTTAAGACCTTGGCCTATGGAATACGCATG
TTGCGTTCTTGGTGGTGGTTGGCTGGTCTGTGGGCAGCTGCAGCCGCACT
TGTTATACCAAAAAGCAGACCAAGTTGGACAGTGGCCTTCAGACAGGGCG
AGCAATATTGCGAATGGTGGTGACGCTGCTTCCCCGATTTGTGTCTCCCT
TCCTCAATGCCGTCGCATTGCGAGTTTGTTTCTGGAAGGGTACGTAGGCG
ACTTTTATTCCTCCACGAACCTCTTGACGGGGTGCTGGGGCTGGCGCTGG
GCCTCAATTAGTCGAGTGGTCCAGGAACGGGTTCATAGTATTGGGCCTTT
CACGAACATAGGCGCAAGAAAGGTGTACGGGTTGCAGTGCTTCCTGCCAT
GATCGCCAATCCTCGGGCTTGCTCGCCTGATCAAAGGACAATGGTAGAAT
TGCCGTGTCCCGGGGGCCCAATGGCGAGACGGGGATCGGTGTGCAACCCA
TCGCCTGGCCGGGGAGAACCCGGTATGCTCCGTCCCGGCGCAATTGTAGG
GACGCGCAGCCAATGGCATAAAGGCTACCCTGCGAGGGCTGGCCGGCGGT
CCAGCAAGTGCAAGTAGTATAGTGGGCCCACGTTCGGTGGCATGCACAGG
ACGGGGTGTAATAACAGCCCTGCCCAATGTGAGCACACACTTGCAGTGAT
TCATATGAATTGTAACGAGGTACAATCGCACGTGTGTGCGATTGACTGTT
CTCGTAATTTCAGTTGATTCATTTAAGAATTGAATGTTATTATATTCGTG
ATTATCGCATCAAGGAAAAAAGAACCAGGCAGGTTGGGGGTGGAGGGTAG
AAAAAAAGAAAAAAAAGCACACACTTGCAGTACGCTTGGAGTGCAGTATG
AGTAGTACAAGTTTCAAAGTACCGGAAGTGGTAGCGCTTGTCCATGGGAG
TACCTATGTACAGTGCGAGAACTGTCTGAATCACGAGGAACTCGAGGGAT
ACACCGCCTCGAATGAGGCCTTAATTAACCTCTAAGTGCCAACCCTGCCC
CTGTTCGCCTGCAGTGGCGACCTGTCCGGGGAGGAGTGGGAGTCCCCCGC
TAACTACTTGGATTTAGTGTGGGTCAAACTGTCGAATGTCGACTATCGAT
AGATATATAGATCAGCTTATCTACCACTCAAAATAGATCAGCACTGTTGA
TAAATAGGTTGATTTGCTTAAACATTCCATCACTCCCCCCCCCCTTTTCA
CCTGCAGCGGCAAGCTCACCGGAGAGGAGTGGGAGTCCCCCGCGGGGACG
CTGGCCCGCATCATCATCCTGGACCAGTTCCCTCGCACCGTGAGCAGGTC
TGGCCACACCTAACACGAGTAAAGTAGTTGTACTAGACTCGAGTACAGCA
AACTACAGTAGTAGTTGTATATATATACTTCCGGAAGTACTACAGTAGTA
GTTGTACTACTACATATATACACTGGCCCGGATCATCACCCTGGACCAGT
TCCCCCGCACCATTCACAGGTGAGGCCCTACCAATACCTACCACCACGAC
TACTAAACCAGTTCCCTCGCACTGTTCACAGGTCAGGCCACAGCGGGGGC
GCCCCTACCAGTGCAGTTCCTACCGCCACGAGTACAGTATTCACAGGAGC
AACACAGGGCAAGGTGCAGGCCACGTCACCAAAGACCTCAGCAGTGGCCC
GTCCTTTTAGCTCGCCAAGGGAAATTTGTGTTGGGAAGGGGAGAAAAGGA
GGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGCAGGAGGAGG
AGGAGGAGGAGTAGAGTTGTACTTCGAAGTACTAAACTCGAGTACAGTGC
AGCAGTAGGTCTGCAATGTCCTGGGAGGTGTGTGGCGCAGAGCCGCGAAC
CGACAGCAGTGTTAGAAATCTCCTCACCAAACGACTTGGTTTCAGTATCG
GAGAATGTGTTCAGGTGAAAGCTACTTCGGGGGTAGTAAATAGTATGTCG
GGCTGTTTTGGGGTCTGGGTTTGGGTTAGGGGTATTGGTTGGGTGGGTGG
GGGGCGGGTGCCCGATGGTAAAGTCGTCGTCCTCGACGTCGATCAAGCCT
TTCTAACACGCCTCCGAACCGAAGGTAGTGCGACGCGCTCCAAGTACAGC
ATACCTACAGTGCTTCCAAGTACTCATGAGTATTTGTGCAAACGAGTACT
TTGCGTGGTGTTGCGTTATAGCTTGGAGCTTGTTGGCCGCGTAAGTACCT
CTTCCGAGCCGGGATGTACATAGATTTATGTACAGGGGCGTCCTTCTATT
TACGTTTTTCTTGCCCGGGCCAGTCTTGGCGCCGTTTTGTTTAAGTCCCG
CCCCCAGGGCGTTGGGGAGTGACGACAACCTCTTACCGCTTGCTGAACCC
TTTAGCCCCTGGTAAATTGGACTTACGCACTAAACCCCTATGACTGCACA
GACCCCAGGGGCGAAAGGGTTGGACAAATTTCCACAGTCTAGAGCTACTG
TACATGCGAAAGTACGACTGTAGCGCCATTTGGGCCGCCCCACCTCTCAG
TGTTTTGTCGCCCTGTCGGTGCAACCTTTTTTCTAAAGGTTTCTACTGTC
TTTTCTTTTTTTCTTTCTTTCTTTTCTATCTTTCGGTGTGTATAACAGGC
CGGTGTCATCGCCGGGTGTGTTCAGGGGTGCCCTTGAGGCGCTTGGAATG
ATAACATTCACTTTTTACCCCTTGATCCACCAAGCACATTTTGGTACCCT
ACTACAGCAGCAACAGGAGCAACACGGGGCGAGGTACAGGCCACGTCACT
ACAGACCTCAGCAGCGGCCCTTCCTTATAGCTCGCCAGGGAAAATTTGTG
TGTGGAAGGGGAGAAGAGGAGGAGGGGGAGGCCTAGCTCTACTACAGAGT
GATGTGGCACAACTTCGCGCGTACGTTTTAACCAACCTGTCGGTGCAACC
CATTGCACATTTTGGTACCCTACTGCAGTCTCGACCGAGGCACGTGGTCA
ATGCTCTCGGGACTACGGCAAGCACCATGTGAGTACTTATATATATATGC
TGCAATAATGTGGCACAAGCTCGCGCCTGTTTCACCAACCTGTCGGTGCA
AACCTATTGCACATTTGGTACCCTACTGCGGTAATGTGGCACAACCTCGC
GGGTCTGTTTTTAAGTTTTTATCCAACCTGTCGGTGCAAACCTATTGGCG
TGCTACCAGCCGGGTTCGTCGCTGGCGTTGAGGTGTGTTAGAAACCCCTC
GCCAAAGGACTCGATTCAAGTATGCGGAGATGTCCGGAAATTTGCGACTA
ACTAATTTCTAAGTTTTCACCTCAACACATTCTCCGATGCTGACACCAAG
TCATTTGGCGAGGACATTTCCAACTCTACCGGTGGTGTTGTTCAGGGGCA
CCCGCGAGGCGTTTGCGGGCGACGAGAAGGCAGCGGCGCTGTCCTTGTCC
TTCGTCTCGGAGGGCTGGGACGAATCCTTGGCGACGTTGACTGAGAAGCA
CTTCTGCTACATGCCCCTCATGCACTCGGAGAAATTGGAGCTGCAGGTTA
GGGATCGCGGCTTGTCTTCGTCTTCATCTTCTTCTTCTTCTTCTTCTTCT
TCCTTTAAAGTACCATATTGTCTTGATCGTTCCTCATCTTCTTCCTCCTC
CTCTTCGTGGAATGTCGGCGGCAGGACAAGTGCGTGGAGTGCCTGACTTT
GCTGGTGCCCTTTTAGGCCCTCAACTAGCGGTGAAATGAAGGCTAATTAG
GCCCTAACTAACTCTGAGTGCAGGACAAGTGCGTGGAGTGCCTGGCTTTG
CTGGTGGAGGCCAACGTCGAGGACACGGCCTCCTGAAAGTAAACTAGGGG
CAATTAGACCTAAACTGAGGGCTGATTTGGCCCTAATTGAACTCGTTGGC
AGGACAAGTGCGTGGAGTGCCTGACCAAGCTGTTGCCCTTTTAGGCCCTC
AATTAGAGGAAGTAGGGGTAGTTCGGCCCTCAACTAGTCGTAGAGGTAAA
TAGGGGTAATTAGACCTGACCTGAAGTCTAATTTTGACCTAATTTACCTC
GAAGCAGGACAAGTGTGTGGAGTGCTTGACCAGGCTGGTGGAGGCCAACG
TCGAGGACACCGCCTCCGGGAAATATGCGCGCTTCATCCTGGACTTTGCC
AAGGAGCACAGGGACATTGTCAAGCGCTTCGGCAGGTGACTGCAGTAACC
CCCTTTATTCTTTGATGTGATTGAAAACCACTATTACGAGAGCACTCTAT
TCTTAAATGATACAACCACTAATACGAGAACACTCAATCTCACACACGTG
CGATTGTACATCGCTACACTTTATATGGATCACCGCCTGTCCTCCATTCT
TTTTGCAGGTTCCCCCACCGTAACGCGCTGTTTGGGCGTCCACCGCGGAA
TTAGGGGTAATTAAACCTAAAATGGAGGCTAATTAGGCCCTAATTAACCT
CTAAACCCTGCTTTTCGCTGCAGGTTCCGCCACCGCAACGCGCTGTTTGG
GCGGGCGTCCGCCGCGGAATTAGAGGTAATAAGGGGTAATTAGACGTACA
ATGAAGGCTAATTATTCCCTAATTCACCTCTAACTTTCACTGCAGGTTCC
CCAACCGCAACGCGCTGTTTGGGCGGGCGCCCACCGCCGAATTAGAGGTA
ATTAGGGGTACCGTAATTAGACCTAAAACGGAGGCTAATTTACGCCCTAA
TTAACGTGTAAGTGCCAACCCTGCTGTTTGCGACAGGTTCCCCCACCGCA
ACGCGTTGCTTGGTCGGGTTTCCACGGAGGAGGAGGAGGCGTGGCTGTCT
TCGGACGACCTGCCCGAGTTTGCCAAGAGCCAGATGACGCCGCAACCATC
GGCTACGGCTTGAGGCAATGGTGTATGGAAGGACCATGCACCAGTGGCTT
GAGGCTTTTGTTCGTGCGTCCTCCCTGCTCTCCACACGGCACACATTGCT
TACGGTACAGTAGTACTACTGTATGTAGTCCTGGAACTAGAACTGCCCGA
ATTTGCAAAGACACGATGGCGCCGCAGCCATCGCCTGCGCCATCGGCTAC
GGGTTGAGGGTTTCGTGCATGCGTCCTCCGTGATCTCGACGAAGAGCACA
TTTCTTACGATACATGGCAGTAGATCATCTTGGAACGAAGAACTTCCAAC
AACTTCGAAGTCTTCGAGTATTTTTACGTAGTGAGCCGGCATCGATCTGC
CCGAGTTTGCCAAGACACAGATGGCGCCGCAGCAATCGGCTACGGCTTGA
GGCTTTCTCTTTTCGTGCGCCCGCCACCCCTGCTCTCCAGGGTTGGCACT
TGGAGGCTAATTACGGCCTAATTAGCCGTCGTTGTAGATCTATGTAATTG
CCCACTACCTACCTCTAATTGCGGGCCTAAAAGGGCACCACTTGCTGTAG
GGGTTAAGTGCCAACCCTGTTCGTGGGTACTCCCTGCTCTCGACAGTGCG
CACATTTCTTACTATACAGTAGAACTACTTCACAGTAGTACCAAGTGCTT
GGCGCCGCAGCCATCGGCTACGGCTTGAGGCTTTCGTCCGTCGCCCCTGC
TCTCGACACGGCGCACCTTTCTTACGATACAGTAGCTCCGATCCAGTAGC
TCCGCCTCGACCGAGGCGCGTGGTCAATGGTCGAGATCGGGACTACTTAC
GGCAAGCGCAACGTGAGTACATGTATACTTCGTATTTACAGTAGAACTAC
TAGTACTAGTACTGCCCAGTGCTTACTTGCAAGTCGTCGAGTATTTTTAC
TTGTTATTTTCGATCGCGTACGAGTTCCGGGCCCCGTTCCCAAACTTGGG
CTCCCTTACCGGCAGAGCTAACGCTACTAATACTCGAGTAGCTCTTCTTT
CACTCGCGGGGCACAGTGACACAGCAAAAAAGTACAAGTAGCACATGTAC
TTCCCTCCGAGCAAATCAAATGTCCTAGATTTTGGTGGCGCCTGGTGACT
TGGGCGACGCACGAACACCCCCCACAGGTGTGCCAAGTGTTGGATCAAAG
TAACACAATTGTTTGTTTGACGCACCGTAGTGTTTTCAGTTTGCTGCGGT
GTTCCATGGTGTTTCTTTTGTCTTTGGGCCCATGGCGTAAACTGTCTTTG
GGTGCACTTCCTTGCGCTCGTCGTGACGTAGAGGGTCTTGCTCAGTGCTT
GTTTCAGCGCTTGCCGTAGCATGTACCGTAGTCGGCGGAGAGATATTGCC
CCCATGGGACAATTTTCGGCGGAGTACTTCTAGCCAGGAAGGCCCAAATT
TCCCGAAAACTCTCCGAACAGTTCCCCCAGGTCCTGAGGAAGATTTCCTG
AATTTTCCTGCGCGAATCCGACCGGTATTCGGCGAGAAAAGTTCTCCCGA
AGATTGGCATGGGTGGGGCAAGATCTCTCCGACGACTATGGTATCCCAGA
AGCCGTTGACCAGTTGCGGCCCTATTTTCCAAGGTTTACACAGAGCCGGC
CACGGGTCGGGTCACAGAGCTGGGCCACGGCCGGGTTGGGTTTTTTCGGG
TCGAGTCGGACCCCAAAGCCCGGTATTGGCCCGGCCCGCGACAGTTGACA
AGGCCCGTGACCCGGCCCGTGGAAAATCTCGACCTGAAAGCCCGGTACTG
GCCCGGCCAGTGAAAACGGTCCGGCCCGTGACCCGGCCCGTGGTTTTTCT
GGCTCTGCAATATGTAAAGCCTTGCTATTTTCGGCGGTATAAGTGGCCCC
GGGGCTGGGACCACGTGCCAGGACGGATGCACAGGCTCGGTACGTGCTTC
TACAGTAGAAGGACTATTGTACCATAGAGCTCTACAGGCTGCAGAACAAG
TTTGGGGGGGCTTTGAGCCCTGGACAACCACAAATACGAGAACACTCAAT
CTCACACACGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:1110448..1119008-

>mRNA_S-ischiensis_contig12.2595.1 ID=mRNA_S-ischiensis_contig12.2595.1|Name=mRNA_S-ischiensis_contig12.2595.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1428bp|location=Sequence derived from alignment at S-ischiensis_contig12:1110448..1119008- (Schizocladia ischiensis KU_0333)
ATGTCGGACCCTCTACCAGGCGGTTTGGAGCCGGGGGATGCGCCTGCAGG
CCTCAAGTCAGCGTCCGAGATGTCGGACCCTCTACCAGGCGGTTTGGAGC
CGGGGGATGCGCCTGCAGGCCTCAAGTCAGCGTCCGAGGTGCTTGAGTTC
TGGCTTGGGGACATGGAGCGTTACACCACCGACCCGGAGTACAAGGCGGT
CAAGGACAAGCAGTGGTGGGCCGGGAAGGACGAGGAGTTCAATGATGTGC
AAATGGCGTCCGCTGATCTGATATCAGCAGCTAGCAGGTGCTTGAGTTCT
GGCTTGGGGACATGGAGCGTTACACCACCGACCCGGAGTACAAGGCGGTC
AAGGACAAGCAGTGGTGGGCCGGGAAGGACGAGGAGTTCAATGATGTGCA
AATGGCGTCCGCTGATCTGATATCAGCAGCTAGCAGCGGCAAGCTCACCG
GAGAGGAGTGGGAGTCCCCCGCGGGGACGCTGGCCCGCATCATCATCCTG
GACCAGTTCCCTCGCACCGTGAGCAGCGGCAAGCTCACCGGAGAGGAGTG
GGAGTCCCCCGCGGGGACGCTGGCCCGCATCATCATCCTGGACCAGTTCC
CTCGCACCGTGAGCAGGGGCACCCGCGAGGCGTTTGCGGGCGACGAGAAG
GCAGCGGCGCTGTCCTTGTCCTTCGTCTCGGAGGGCTGGGACGAATCCTT
GGCGACGTTGACTGAGAAGCACTTCTGCTACATGCCCCTCATGCACTCGG
AGAAATTGGAGCTGCAGGGGCACCCGCGAGGCGTTTGCGGGCGACGAGAA
GGCAGCGGCGCTGTCCTTGTCCTTCGTCTCGGAGGGCTGGGACGAATCCT
TGGCGACGTTGACTGAGAAGCACTTCTGCTACATGCCCCTCATGCACTCG
GAGAAATTGGAGCTGCAGGACAAGTGTGTGGAGTGCTTGACCAGGCTGGT
GGAGGCCAACGTCGAGGACACCGCCTCCGGGAAATATGCGCGCTTCATCC
TGGACTTTGCCAAGGAGCACAGGGACATTGTCAAGCGCTTCGGCAGGACA
AGTGTGTGGAGTGCTTGACCAGGCTGGTGGAGGCCAACGTCGAGGACACC
GCCTCCGGGAAATATGCGCGCTTCATCCTGGACTTTGCCAAGGAGCACAG
GGACATTGTCAAGCGCTTCGGCAGGTTCCCCCACCGCAACGCGTTGCTTG
GTCGGGTTTCCACGGAGGAGGAGGAGGCGTGGCTGTCTTCGGACGACCTG
CCCGAGTTTGCCAAGAGCCAGATGACGCCGCAACCATCGGCTACGGCTTG
AGTTCCCCCACCGCAACGCGTTGCTTGGTCGGGTTTCCACGGAGGAGGAG
GAGGCGTGGCTGTCTTCGGACGACCTGCCCGAGTTTGCCAAGAGCCAGAT
GACGCCGCAACCATCGGCTACGGCTTGA
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