mRNA_S-ischiensis_contig12.2591.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2591.1
Unique NamemRNA_S-ischiensis_contig12.2591.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig12.2591.1 vs. uniprot
Match: A0A6H5JZR7_9PHAE (ENTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR7_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 6.770e-89
Identity = 138/173 (79.77%), Postives = 156/173 (90.17%), Query Frame = 2 
Query:  203 SMDKLALXXXXXXKIKNLAGEVRDRVAPRNDTERKVYDALSNKNWGASSTLLNDIARDTYDYEKYGIVMPLIWQALDSPSREWRKVFKALTLMEHLIKNGNERVVEDSRDHLHRVRMLSDFNYYEGHLDKGSGVREKSKQLIDLLKDNDAIRSEREKARKLRDKYVGLGSGAG 721
            ++DKL+L      K+KN+ GEVRD +APRNDTE++VY+ALSNKNWGASSTLLNDIARDTYD+EKYGIV+PLIW AL SPSREWRKVFKAL L+EHLIKNG ERV+ED+RD+LHRVRMLSDFNYYEG +DKGSGVREKSKQ+I+LLKDND IR EREK RKLRDKYVGLGSG G
Sbjct:    8 TLDKLSLD-----KVKNMVGEVRDTIAPRNDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIWTALQSPSREWRKVFKALCLLEHLIKNGAERVIEDARDNLHRVRMLSDFNYYEGPIDKGSGVREKSKQVIELLKDNDMIREEREKCRKLRDKYVGLGSGGG 175
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BLAST of mRNA_S-ischiensis_contig12.2591.1 vs. uniprot
Match: A0A835YGI8_9STRA (ENTH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGI8_9STRA)

HSP 1 Score: 231 bits (589), Expect = 5.090e-74
Identity = 110/161 (68.32%), Postives = 139/161 (86.34%), Query Frame = 2 
Query:  206 MDKLALXXXXXXKIKNLAGEVRDRVA-PRNDTERKVYDALSNKNWGASSTLLNDIARDTYDYEKYGIVMPLIWQALDSPSREWRKVFKALTLMEHLIKNGNERVVEDSRDHLHRVRMLSDFNYYEGHLDKGSGVREKSKQLIDLLKDNDAIRSEREKARKL 685
            +DKL +      K+KNLA +V+++VA  +NDTER+VYD LSNKNWGASST+LNDIARD+YD++KYG++M ++WQ+L+SP REWRKVFKAL+L+EHLIKNG ERVVED+RD +HR+  LS FNYYEGH DKGSGVREKSKQLI+LLK ND IR ER++A+K+
Sbjct:    5 LDKLTID-----KLKNLAADVKNQVAVAKNDTERQVYDVLSNKNWGASSTILNDIARDSYDFDKYGMIMTIVWQSLESPPREWRKVFKALSLLEHLIKNGTERVVEDARDRMHRITTLSQFNYYEGHADKGSGVREKSKQLIELLKSNDTIREERKRAQKV 160
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BLAST of mRNA_S-ischiensis_contig12.2591.1 vs. uniprot
Match: A0A6U4DQX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DQX0_9STRA)

HSP 1 Score: 219 bits (559), Expect = 6.140e-69
Identity = 102/166 (61.45%), Postives = 136/166 (81.93%), Query Frame = 2 
Query:  242 KIKNLAGEVRDRVAPRNDTERKVYDALSNKNWGASSTLLNDIARDTYDYEKYGIVMPLIWQALDSPSREWRKVFKALTLMEHLIKNGNERVVEDSRDHLHRVRMLSDFNYYEGHLDKGSGVREKSKQLIDLLKDNDAIRSEREKARKLRDKYVGLGSGA--GGFGG 733
            ++++   EVR +VAP+N+TER+VY+A+SNKNWGASSTLLN+IA D   YE Y +VM +IW++L++  R WR++FK L+L+EHLIKNG ER+VEDSRDH+H++R L+DFNYYEG  D+GSGVREK+KQ++DLL DN AIR ER  AR+LRDK+VG+ +    GGF G
Sbjct:    9 RLRSAVDEVRAQVAPKNETERRVYEAISNKNWGASSTLLNEIAADVRHYEHYSMVMKIIWESLNAAGRSWRQIFKTLSLLEHLIKNGPERIVEDSRDHMHKIRTLTDFNYYEGTTDRGSGVREKAKQIMDLLSDNTAIREERANARRLRDKFVGISNSGRTGGFSG 174
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BLAST of mRNA_S-ischiensis_contig12.2591.1 vs. uniprot
Match: A0A7S1TU31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU31_9STRA)

HSP 1 Score: 219 bits (559), Expect = 8.300e-67
Identity = 102/166 (61.45%), Postives = 136/166 (81.93%), Query Frame = 2 
Query:  242 KIKNLAGEVRDRVAPRNDTERKVYDALSNKNWGASSTLLNDIARDTYDYEKYGIVMPLIWQALDSPSREWRKVFKALTLMEHLIKNGNERVVEDSRDHLHRVRMLSDFNYYEGHLDKGSGVREKSKQLIDLLKDNDAIRSEREKARKLRDKYVGLGSGA--GGFGG 733
            ++++   EVR +VAP+N+TER+VY+A+SNKNWGASSTLLN+IA D   YE Y +VM +IW++L++  R WR++FK L+L+EHLIKNG ER+VEDSRDH+H++R L+DFNYYEG  D+GSGVREK+KQ++DLL DN AIR ER  AR+LRDK+VG+ +    GGF G
Sbjct:    9 RLRSAVDEVRAQVAPKNETERRVYEAISNKNWGASSTLLNEIAADVRHYEHYSMVMKIIWESLNAAGRSWRQIFKTLSLLEHLIKNGPERIVEDSRDHMHKIRTLTDFNYYEGTTDRGSGVREKAKQIMDLLSDNTAIREERANARRLRDKFVGISNSGRTGGFSG 174
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BLAST of mRNA_S-ischiensis_contig12.2591.1 vs. uniprot
Match: G4ZC50_PHYSP (ENTH domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZC50_PHYSP)

HSP 1 Score: 203 bits (517), Expect = 2.020e-63
Identity = 91/143 (63.64%), Postives = 125/143 (87.41%), Query Frame = 2 
Query:  293 DTERKVYDALSNKNWGASSTLLNDIARDTYDYEKYGIVMPLIWQALDSPSREWRKVFKALTLMEHLIKNGNERVVEDSRDHLHRVRMLSDFNYYEGHLDKGSGVREKSKQLIDLLKDNDAIRSEREKARKLRDKYVGLGSGAG 721
            D ERK+ +ALSNKNWGASSTLLN+I++ TYDYE YG++M  IW+ALD+  R+WR V+KAL+L+EHL+KNG ERV+E++RDH+ ++R LS F+Y++G +D+G+GVR+K+KQL+D+L DND IR+EREKA +LR+KYVG+GSG G
Sbjct:    1 DVERKMEEALSNKNWGASSTLLNEISQLTYDYEAYGVIMRKIWEALDAEGRQWRAVYKALSLLEHLVKNGTERVIENARDHMFKLRHLSGFSYHDGSVDRGNGVRDKAKQLVDMLNDNDMIRTEREKAGRLRNKYVGIGSGVG 143
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BLAST of mRNA_S-ischiensis_contig12.2591.1 vs. uniprot
Match: A0A0P1AWZ9_PLAHL (Enth domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWZ9_PLAHL)

HSP 1 Score: 205 bits (521), Expect = 4.820e-63
Identity = 98/172 (56.98%), Postives = 137/172 (79.65%), Query Frame = 2 
Query:  206 MDKLALXXXXXXKIKNLAGEVRDRVAPR--NDTERKVYDALSNKNWGASSTLLNDIARDTYDYEKYGIVMPLIWQALDSPSREWRKVFKALTLMEHLIKNGNERVVEDSRDHLHRVRMLSDFNYYEGHLDKGSGVREKSKQLIDLLKDNDAIRSEREKARKLRDKYVGLGSG 715
            MD+ AL      K+KN+  + +  V  +   D ERK+ +ALSNKNWGASSTLLNDIA+ TYD+E YG++M  IW ALD+  R+WR V+KAL+L++HLIKNG ERV+E++RDH+ ++R LS F+Y++G +D+G+GVR+K+KQL+D+L DN+ IR+EREKA +LR+KYVG+GSG
Sbjct:    1 MDRFALD-----KLKNVMDDAKSAVKAKMGTDVERKMEEALSNKNWGASSTLLNDIAQLTYDFEAYGLIMRKIWDALDAEGRQWRTVYKALSLLDHLIKNGTERVIENARDHMFKLRHLSGFSYHDGSVDRGNGVRDKAKQLVDILNDNNVIRTEREKAGRLRNKYVGIGSG 167
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BLAST of mRNA_S-ischiensis_contig12.2591.1 vs. uniprot
Match: A0A8K1FFS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFS9_PYTOL)

HSP 1 Score: 217 bits (552), Expect = 7.240e-63
Identity = 105/178 (58.99%), Postives = 141/178 (79.21%), Query Frame = 2 
Query:  206 MDKLALXXXXXXKIKNLAGEVRDRVAPR--NDTERKVYDALSNKNWGASSTLLNDIARDTYDYEKYGIVMPLIWQALDSPSREWRKVFKALTLMEHLIKNGNERVVEDSRDHLHRVRMLSDFNYYEGHLDKGSGVREKSKQLIDLLKDNDAIRSEREKARKLRDKYVGLGSGAGGFGG 733
            MDK  L      ++KN+  E ++ V  +   D E+K+ +ALSNKNWGASSTLLN+IA+ TYDYE Y ++M  IW+A+DS +R+WR VFKALTL++HLIKNG ERVVE++RDH+ ++R LSDF+Y++G  DKG+GVREK+KQ++D+L +ND IR EREK+RK+RDKYVG+GS  GG GG
Sbjct:    1 MDKFTLD-----RLKNVVDEAKNAVKAKLGTDVEKKLEEALSNKNWGASSTLLNEIAQLTYDYESYNVIMTKIWEAMDSHARQWRTVFKALTLLDHLIKNGTERVVENARDHMFKLRALSDFSYHDGSADKGAGVREKTKQILDMLNNNDLIREEREKSRKMRDKYVGIGSVGGGMGG 173
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BLAST of mRNA_S-ischiensis_contig12.2591.1 vs. uniprot
Match: A0A2D4BF42_PYTIN (Eukaryotic translation initiation factor 4 gamma 2 putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF42_PYTIN)

HSP 1 Score: 217 bits (552), Expect = 7.360e-63
Identity = 106/174 (60.92%), Postives = 138/174 (79.31%), Query Frame = 2 
Query:  206 MDKLALXXXXXXKIKNLAGEVRDRVAPR--NDTERKVYDALSNKNWGASSTLLNDIARDTYDYEKYGIVMPLIWQALDSPSREWRKVFKALTLMEHLIKNGNERVVEDSRDHLHRVRMLSDFNYYEGHLDKGSGVREKSKQLIDLLKDNDAIRSEREKARKLRDKYVGLGSGAG 721
            MDKL L      ++KN+  E +  V  +   D E+K+ +ALSNKNWGASSTLLNDIA+ TYDYE Y +VM  IW+ALDS +R+WR VFKALTL++HLIKNG ERVVE++RDH+ ++R L+DF+Y++G  DKG+GVREK+KQ++DLL DND IR EREK+R++RDKYVG+ SG G
Sbjct:    1 MDKLTLD-----RLKNVVDEAKSAVKAKLGTDVEKKLEEALSNKNWGASSTLLNDIAQLTYDYESYNVVMAKIWEALDSHARQWRTVFKALTLLDHLIKNGTERVVENARDHMFKLRSLTDFSYHDGSADKGAGVREKTKQILDLLNDNDRIREEREKSRRMRDKYVGISSGPG 169
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BLAST of mRNA_S-ischiensis_contig12.2591.1 vs. uniprot
Match: K3WLF9_GLOUD (ENTH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLF9_GLOUD)

HSP 1 Score: 216 bits (550), Expect = 1.810e-62
Identity = 104/174 (59.77%), Postives = 138/174 (79.31%), Query Frame = 2 
Query:  206 MDKLALXXXXXXKIKNLAGEVRDRVAPR--NDTERKVYDALSNKNWGASSTLLNDIARDTYDYEKYGIVMPLIWQALDSPSREWRKVFKALTLMEHLIKNGNERVVEDSRDHLHRVRMLSDFNYYEGHLDKGSGVREKSKQLIDLLKDNDAIRSEREKARKLRDKYVGLGSGAG 721
            MDK AL      +++N+  E +  V  +   D ERK+ DALSNKNWGASSTLLN+IA+ TYDYE Y +VM  IW+A DS +R+WR VFKAL+L++HL+KNG ERVVE++RDH+ ++R LSDF+Y++G  DKG+GVREK+KQ++DLL DND IR EREK+R+LRDK++G+GSG G
Sbjct:    1 MDKFALD-----RLRNVIDEAKSTVKAKMGTDVERKMEDALSNKNWGASSTLLNEIAQLTYDYESYNVVMKKIWEATDSHARQWRTVFKALSLLDHLVKNGTERVVENARDHMFKLRQLSDFSYHDGSADKGAGVREKAKQIVDLLNDNDLIREEREKSRRLRDKFIGIGSGGG 169
[Close]
BLAST of mRNA_S-ischiensis_contig12.2591.1 vs. uniprot
Match: A0A7S4DHG0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHG0_HETAK)

HSP 1 Score: 203 bits (516), Expect = 2.420e-62
Identity = 94/171 (54.97%), Postives = 134/171 (78.36%), Query Frame = 2 
Query:  245 IKNLAGEVRDRVAPRNDTERKVYDALSNKNWGASSTLLNDIARDTYDYEKYGIVMPLIWQALDSPSREWRKVFKALTLMEHLIKNGNERVVEDSRDHLHRVRMLSDFNYYEGHLDKGSGVREKSKQLIDLLKDNDAIRSEREKARKLRDKYVGL--------GSGAGGFGG 733
            +KN+A +V   V P+NDTE++V++ALSN+NWGASSTL+ +IA+DT+DYEKY  +  LIWQALDSP R WR VFK L+L+E L+K+G+ERV+ED+RDH HR+R+L +F+Y +G +D+G GVR+K++QL++LL  N+ IR ER+KA+ LR+K+ G+        G G G +GG
Sbjct:   17 VKNIAQDVAINVKPKNDTEKRVHEALSNQNWGASSTLMQEIAKDTFDYEKYPQITKLIWQALDSPGRAWRSVFKGLSLLEFLVKHGSERVIEDARDHTHRLRLLLNFSYSDGGVDRGQGVRDKARQLVELLSSNETIREERQKAQALRNKFSGISNDSYSYGGGGGGSYGG 187
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZR7_9PHAE6.770e-8979.77ENTH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YGI8_9STRA5.090e-7468.32ENTH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6U4DQX0_9STRA6.140e-6961.45Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1TU31_9STRA8.300e-6761.45Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
G4ZC50_PHYSP2.020e-6363.64ENTH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A0P1AWZ9_PLAHL4.820e-6356.98Enth domain-containing protein n=1 Tax=Plasmopara ... [more]
A0A8K1FFS9_PYTOL7.240e-6358.99Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BF42_PYTIN7.360e-6360.92Eukaryotic translation initiation factor 4 gamma 2... [more]
K3WLF9_GLOUD1.810e-6259.77ENTH domain-containing protein n=1 Tax=Globisporan... [more]
A0A7S4DHG0_HETAK2.420e-6254.97Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:1072525..1081188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.5
Seed ortholog evalue3.1e-58
Seed eggNOG ortholog36331.EPrPI00000013702
Preferred nameENT3
KEGG koko:K12471
KEGG Pathwayko04144,map04144
GOsGO:0000147,GO:0002020,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005856,GO:0005884,GO:0005886,GO:0005938,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007034,GO:0008104,GO:0008150,GO:0008289,GO:0009579,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019899,GO:0022607,GO:0030029,GO:0030036,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030276,GO:0030479,GO:0030659,GO:0030662,GO:0030665,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031410,GO:0031982,GO:0032266,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0033365,GO:0034498,GO:0034613,GO:0035091,GO:0042147,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061645,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080025,GO:0097435,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1901981,GO:1902936
EggNOG free text desc.Source PGD
EggNOG OGs1MGDE@121069,KOG2056@1,KOG2056@2759
Ec32 ortholog descriptionENTH domain protein
Ec32 orthologEc-04_003620.1
COG Functional cat.F
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size734
Cds size528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2591.1prot_S-ischiensis_contig12.2591.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 1072730..1081188 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.5966861-UTR-S-ischiensis_contig12:1072524..10727291622815647.5966861-UTR-S-ischiensis_contig12:1072524..1072729Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1072525..1072729 +
1695739825.9045517-UTR-S-ischiensis_contig12:1072524..10727291695739825.9045517-UTR-S-ischiensis_contig12:1072524..1072729Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1072525..1072729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.6077652-CDS-S-ischiensis_contig12:1072729..10727911622815647.6077652-CDS-S-ischiensis_contig12:1072729..1072791Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1072730..1072791 +
1695739825.9223552-CDS-S-ischiensis_contig12:1072729..10727911695739825.9223552-CDS-S-ischiensis_contig12:1072729..1072791Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1072730..1072791 +
1622815647.6193955-CDS-S-ischiensis_contig12:1075955..10760751622815647.6193955-CDS-S-ischiensis_contig12:1075955..1076075Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1075956..1076075 +
1695739825.9342387-CDS-S-ischiensis_contig12:1075955..10760751695739825.9342387-CDS-S-ischiensis_contig12:1075955..1076075Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1075956..1076075 +
1622815647.6295023-CDS-S-ischiensis_contig12:1078895..10789741622815647.6295023-CDS-S-ischiensis_contig12:1078895..1078974Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1078896..1078974 +
1695739825.9454124-CDS-S-ischiensis_contig12:1078895..10789741695739825.9454124-CDS-S-ischiensis_contig12:1078895..1078974Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1078896..1078974 +
1622815647.639336-CDS-S-ischiensis_contig12:1079537..10796731622815647.639336-CDS-S-ischiensis_contig12:1079537..1079673Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1079538..1079673 +
1695739825.9646795-CDS-S-ischiensis_contig12:1079537..10796731695739825.9646795-CDS-S-ischiensis_contig12:1079537..1079673Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1079538..1079673 +
1622815647.6516633-CDS-S-ischiensis_contig12:1081057..10811881622815647.6516633-CDS-S-ischiensis_contig12:1081057..1081188Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1081058..1081188 +
1695739825.977213-CDS-S-ischiensis_contig12:1081057..10811881695739825.977213-CDS-S-ischiensis_contig12:1081057..1081188Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1081058..1081188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2591.1

>prot_S-ischiensis_contig12.2591.1 ID=prot_S-ischiensis_contig12.2591.1|Name=mRNA_S-ischiensis_contig12.2591.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
MDKLALDKLSLDKIKNLAGEVRDRVAPRNDTERKVYDALSNKNWGASSTL
LNDIARDTYDYEKYGIVMPLIWQALDSPSREWRKVFKALTLMEHLIKNGN
ERVVEDSRDHLHRVRMLSDFNYYEGHLDKGSGVREKSKQLIDLLKDNDAI
RSEREKARKLRDKYVGLGSGAGGFGG
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mRNA from alignment at S-ischiensis_contig12:1072525..1081188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2591.1 ID=mRNA_S-ischiensis_contig12.2591.1|Name=mRNA_S-ischiensis_contig12.2591.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8664bp|location=Sequence derived from alignment at S-ischiensis_contig12:1072525..1081188+ (Schizocladia ischiensis KU_0333)
CTTCGCCGAAGGTTTGTCACCCTCCTCGCTGCTGCTTTGCAATCGCTTCA
GAGGGCGGCTGCGGGCTGGTGGCACCCGCTACTGGTGACCCAGACCCCGG
TGGAAGTTGGTTTCGCTTTTTCCGTCTCGGGGGGGGTGGCTGTCTGCGCT
CGCGGAAGCGGGATCAGTGAGTGCTTAGCGCGCGGCGCCGGTTCACTGGA
GCAGCATGGATAAGCTTGCCCTGGACAAGCTGAGCCTGGACAAAATCAAG
AACCTGGCTGGCGAAGTGTGAGCAAAATTGAGCAAAATTGCACAGAGCCG
TGGCCCCCAAAGCTCCTTTCGACCAGTTCGACTGCCGTATGAATCAGCGA
TGCGCGGTGCCGGCGATACAGCGTACCCTAACAACGTTGCAAAACCGGGT
CAGGCCTCTCTAGCACCTTAGGCGGGTCCTTCCATGGCGTGGGACTTGGT
TCGGCGGGGTCTACGTGCTCTGTGGGCTTGCGGCGGCGTACTTGCCTTGC
GAGCGGCTAACGTCTGCAAAAGTCATCGTTGTTGCCTCCGGGGGCGCTTT
CTTTCTCTGTAGAACCGCCCCTTTCACCCCTCGAAGAGGGTTACTCAATA
GCTACTCTCGACTGGGGATCGCTATCATCCGCGATATGTCATATACGGTA
CTTCGAAGCAAAAACAGTATGTTTGGCGCTTATTCGTGGGAAGGATTTAC
AAGTAGCCCAGCAAAGTGACTTGTTTTTCGCAAATTGTGGCCTGTTTTTT
TGCTGTACAGTAGAATGATTCCGCCGCAACGTGCCCCACTGCCCCGGGGG
AGTTTTTTGTCTTCTGCTTCTCTCCCGCCAGGTTTTGTCGAGATGCCCAC
AGAACATACGATCAACTTACATGCATATGGGACACCAGCGAAGAAACGGC
TTTGAAGACACGAAGGATTCGGGTCTTCCAAAACTCAAGAGAAACGCCAA
AGGCTTCATACCGCCGGCGGTATATAGGAAACGGCAAAACTGCCTCCCAG
GTCCGCTTCGGCTCCCCTCTGAGGCGGATATTTGACCCTTTTACCCCTGG
TAAATTGGACTTACACACACTGAAACCCTCTGATTATGCGGACCTCAGGG
GCAAAGCCGCTACCGTAATGGACGGTGTATAACGACCCCCTTCGGGACAA
CCGGCGGGCAATTTTTTCTCGCCGGAACTTTTGTTGATCGAATCGAAAAC
CCTCGGAATGAATGCCTTTCGTCGAGACCAATATATCCGAGGGTTTCCGA
TTCTCGATCGAAAACCGATCGGGTGAGAAAAATTGCCCGCCGGTTGTCCC
GAAGGGGGTCGTTATACACCGTCCTTTACGGTAACCCAATAGTCTCCGCC
GTCGAGGCGCGTGGTCGAAATGGTCTGGACTACGGCAAGCACAACGTGAG
TGCATACTTCTGTACTTGCATACCTCGAAGAATGTATACTTTGTACCAAG
TATGTGTTATGTACGGTAGTGTTGTCTGCTCCGTCTCGATCGAGGCGCGT
AGTCAGTGGCCTCGGGACTACGGCAAGCACGACGTGAGTATACACACACA
CATGTGAAATGTTGTGAACTGGAGCCGGTTTGTACCGGTTCGGTTCAGTC
AAATGGCTTACAATAGCCGGTTTGGTCGGCCGAAAGACTTGCCGTTTTGT
TTCCCCCCCCGTTTCTTCTGTCCTTTAGAATCGTGCGTGTTTGGCCGCAT
CGGGTTGTATTGTAGCCGTTGCGGGGTAACGTTACCGGCATTGATATGAT
AGCCTGCTTGCGGTACACAAGTGGCCGTTGTCGAGCAAAAGGTGAACGAT
CAACCGGGTCATCGGTTGGCCAAAACAGATCAACACCGGTTCCTCGTTGA
CTTACCCTTGTATGGCGCTTGTACTGTACCGTGCTCGTTTCGTCGAGTGG
TCCAGGAACCGGGTTCATAGCCCGAAGGTCGCGGTTCCGTAGTTTGACAT
CACATCACACCTGCTCTGCCTCGAACGAGGCGCGGGGTCAATGATCTCGC
GACTGTGGCAAGCACCACGTGAGTACATATATATACATATATCACATCAG
ATCACAATTTTTAACAACCCTGTCCAACATGTGTACTCGTATACACACGG
CACTTGTATTTCGTGTCTGTTCGCACCTCCACTGCAATAGCCGGTTTTGA
TTTAGCAACAAGTCTCACCCGTCACAACTCCACCGCAATAGCCAGTTTTG
ATTCAAAAACAGGTCACACCGGCGGTCATGTCGTCGCACACCGCGTGTGT
GCGGGCCAAAAAATTGTCCGCGTCGGGCAGTGATGGAATATCCAAGCAAA
TGAACCTATTTATCAAAAGTACTGATCTAGAGCTCTATTTTGAGTGGTAC
ACAAGCGGCGAGTTCCAGGCCCCGTGCCAAATGGCTCGTCCCAAAACAGG
ACTCAACGAAGCCCTTCTTCCCCTCGCAGAACAAAAGAAAACAAAAAATA
AAGAAGGAAAGGGGCGGGGTGATGAGGAAAGGGAAGAGGCGCAGGGAAGT
CTCTTGTGCACACAGTGGGGCATGCGGTCTACATATCGACAGTCGATATT
CGATAGTTTGACCCAAACTTAAAACCAAGTAGTTGCATAACACCACCCAC
AAAATCACCCGAGCCCGATAGCTATCCACTGATGGATATTCCATACTACT
GTAGCATCGGGCAGGCGGGACCGTGTGGCCCCGAGGAACGACACGGAGAG
GAAGGTGTACGGTGCCCTCTCCAACAAGAACGCCTGTGCACAGCTCTACT
GCAATAGCCAGTTTTGATTTTAACATGTCTCACCAATCATGTCGCAAGAC
AAACCAATGAGTACATACATATATATATATATATGTATTTGGTGTGATAA
TCACTGGTATACGAACGCTCAACCATTAAATGGGATAGCCGCTAATACAA
AGAACACTCACATCTCACACACGTGCGATTGTACCTATGTTTCAATCTAT
ACGAGTCACCGCCAAAAAATCGTCTGCACCTGGGGCGCAGGCGGGACCTC
GTGGCCCCGAGGAACGACACGGAGAGGGAGGTGCACGATGCCCTCTCCAA
CATGAACTGGCGCGGCACTTGTATAGCGTGCCTGTTCACAACTCTACTGC
ACCGCAATAGCCAGTTTTGACTCAACAAGTCTCTCCGGCCGTGTTGTCCC
ACACCGCGTGCGGGCCAAAAAATTGCCCCGACCTGGGGCAGGCGGGACCG
CGTTGCCCCCAGGACACTGTACATGTATAGCGTGTCTGTTCACAACCCTA
CCGTAATAGCCAGTATTGATCTAACAACAAGTCTCGCCCCCAAAAATGCC
CACACCTTGGGCAGGCGGGACCGCGTAGCCTCGAGGAACGACACGGAGAC
GGAGGTGTACGATGCGCTCTTAATCGGTCGAGCCCGACAACTATCTACTG
ATCATGATTTAATTGTCTGCACCTTGGGCAGGCGGGACCGCGTGGCCCCT
AGGAACGACACGGAGAGGAAGGTGTACGATGCCCTCTCCAACAAGAACTG
GGGGGCGTCCAGCACTCTCCTCAATGACATCGCCCGGGATACCTATGACT
AGTGAGTGTCGAGTGTGATGTGATGTGCACACAAAGGCACTGTAGTGTGA
CATCACATCACATCACAATAAATCATCCGGGTGTGTGTGTGCGTGTGTGT
GCGTCCAACGCTCTCCTCAACGACATCGTCCGGGATAGCTACGACTAGTG
AGTGTCGAGTGTGATGTGATGTGATGTGATGTGATGTGCACACAAAGGCA
CTGTAGTTTGACATCACATCACATCACAACAAATCATCGGGGTGTGTGTG
TGTGTGTGTGTGTGTGTGTACGTCCAACGCTCTCCTCAACGACATCGCCC
GGGATACCTACGGCTAGTGAGTGTCGAGTGCGATGTGATGTGATGTGGTG
TGATGTGCACACAAAGGCACTGTAGTTTGACATCACATCACATCGCAATA
AATCATCGGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGT
GCGTCCAACGCTCTCCTCAACGACATCGCCCGGGATAGCTACGACTAGTG
AGTGTCGAGTGTGATGTGATGTGATGTTCACACAAGGACCATGTAGTTTG
ACATCACATCACATCACAATAAATCATCGGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTACGTCCAACGCTCTCCTCAACGACATCGC
CCGGGATAGCTACGACTAGTGAGTGTCGAGTGTGATGTGATGTGATGTGA
TGTGATGTGCGCACAAAGGCACTGTAGTTTGACATCACATCACATCACAA
CAAATCGTCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTCCGA
CGCTCTCCTCAACGACATCGCCCGGGATACCTACGACTAGTGAGTGTCGA
GTGTGATGTGATGTGATGTGATGTGATGTGCGCACAAAGGCACTGTAGTT
TGACATCACATCACATCACAACAAATCATCGGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTACGTC
CAACGCTCTCCTCAACGACATCGCCCGGGATAGCTACGACTAGTGAGTGT
CGAGTGTGATGTGATGTGATGTGATGTGATGTGCGCACAAAGACACTGTA
GTTTGACATCACATCACGTCACAACAAATCATCGGGGTGTGTGTGTGTGT
GTACGTCCAACGCTCTCCTCAACGACATCGCCCGGGATAGCTACGACTAG
TGAGTGTCGAGTGTGATGTGATGTGATGTGATGTGATGTGCGCACAAAGG
CACTGTAGTTTGACATCACATCACATCACAACAAATCATCGGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA
CGTCCAACGCTCTCCTGAACGACATCGCCCGGGATACCTACGACTAGTGA
GTGTCGAGTGTGATGTGATGTGATGTGCACACAAAGACACTGTAATTTGA
CATCACACCACATCACAACAAATCATCGGTGTGTGTGTGTGTGTGTACGT
GTGTGTCGAGTGTGTGTGCGCGCGTGCATGTGTGCGTCCAGCACTCTCCT
CAATGACGCGCCCGGGATACCTACGACTAGTGAGTGTCCAGTGTGATGTG
ATGTGATGTGCACACAAAGGCACTGTAGTTTGACATTACACATCACATCA
CATCACAACAAATCATCGGTGTGTGTGTGTGTGTGTGTGTGTACGTCCAG
CGCTCTCCTCAACGACATCGCCCGGGATACCTACGACTAGTGAGTGTCGT
AACTTAACAGTCTTTATAACAATGGAATTTTGTTGAAAGGCATGCAGCAC
CTGCAAAGTACAAAAGCCGTGTACGTGTGTGTGTGTGTGTGTGCGCGCGC
GTGTGTGTGATGTGATGTGCACACAAGAACACTGTAGTTTGACATCACAT
CACATCGCATTGTGTCATCGGTGTGTGTGTGTGTGCGCGCGCGCTCGTGT
GCATGTGTGCGTCCAGCACTCTCTCCAATGACATCGCCCAGGATACCTAC
GCCTAGTGAGTGTCGTAAATAGAAAAGTCTTTATAAAAATGGCTTTTGTT
GAAAAGCATGCAGCACCTGCAAAGTACAAAAGCCGCGTGTGTGTGCGCGT
GTGTGTGTGATGTGATGTGATGTGATGTGCACTCAAGAACACTGTAGTTT
GACATCACATCACATCACAACAAATCATCGGTGTGTTTGTGTGTGTGTGT
GCGCGCGCGCGCGCGTGTGCGTGTGTATGTGTGTGTGTGTGTGTGCGTGT
GCGCGTTTGTCCGTGGGTGCATGTGCATGTGTGTGTGTGCGTGCGTGCGT
GCTTGTGTGTGTGGTATTTGTGTGTGTGTGCGTGCATGCGTGCGTATGTG
TGTGTGTGTGTGTGTGCATTTGCTTGTGCGTGCATGGATGGCGTGTATGC
ATGCGTGCGTGCGTGCCCCCCGGCCGCCGCCCCCGCCGCCGCCGACCTGA
CCTTTAGGGTTGTGAGCTGGTGCCAGTTTTTACCGCTCGGTACCAGTTTA
CTGGTTCAACCAGTTAACCGATCTGTCTCGAACGAGGCGCGTGGTCAATG
GTCTCGGGACTACCGCAAGCACCACGTGAGTACATATATCACTGAGCGGT
GGCCAATTGTGCATAGCCGGAGCGGGTGACATGACCGTTATTCGTTGATT
TTGGGAATGCTTTAGCCATTGCCGGCAACCGGTTAAGACCGACCGGTTAA
CAGTTAAACCGGTAGGCCTTGCCAGTTCACAACCCTGCTGACATTGCAGC
CCCACCCCCGTGACCGCCTGTCCGCCCCGCCGTCCGTCCGTCTGTCTGTC
CGCCACGCGCACCCCCTGCAGCGAGAAATACGGAATAGTCATGCCCCTCA
TATGGCAGGCGCTCGACAGCCCCAGCCGCGAGTGGCGCAAGGTTTTTAAG
GTGAGGGAGGCGCCGCCGCCGTCGCAATCATGGCTGCGTGTTGGTACTGT
AGGTCCTGCACTGTACTACAGTACAGTAGTACTTGGCGTACCGTACATGC
AGATTTGTGTGACGGGTTGAAGAATTTCCCCGAATGGCATCCCCGGTAAT
GGCACAACCCCAAAGTTCTGTCGGTGAAGTACCCGGCATGCTCCGTCCAA
CGGGACGCGTGGCCAATGTACGAAAGCTACAGCTGGCCAGCGCATCCACG
AGAAGGAGCAAAGACGAGCATCATTCGGGTCCAGGGCATGCACAGAGACG
AGAAACCTCGTCCGAATGTGAGTACACACTGATGGCACGGGCGGCTGCTT
CGCCGTCGCCGCCGCCACTGCTGCAGGCCCTGACGCTGATGGAACACCCG
ATTAAGAACGGGAACGAGCGGGTGGTGGAGGTCATTTTAGGTCTAGTTAC
CCCTAGTAACTACCTCTTATCAAGGGCCTAAAAGGGCACCACTTAAGTTA
GGAGTTATGTGCCAACCCTGGTTGTCGTCGCTGCCGTCACTGCCGCCGTC
GCTTTTTTTTCAGGCCCTGACGCTGATGGAACACCTGATCAAGAATGGGA
ACGAGCGAGTGGTGGAGGACTCACGCGACCACCTGCACCGGGTGCGCATG
CTGTCCGACTTCAACTACTATGAGGGGCACCTAGACAAGGGCTCGGGCGG
TGAGTGAGAGATTCCTCGAGCTGTTTGTGCGTTCTATGCAGATTTGCTGG
ACTTCCTGGAAGTACGTACAGTCGGGGCCGCCAGTAAGTTCCGAAAAAAC
CTTCAACTTCAACGTGCTGATCTTCAACTTGAGATTTGTTCTGAAGGCTG
AGGTACAAGGTTTTGACGTGATACCTTCACAGTGAAGCGGCCAATTATTC
GGTGAGTGGAACAAAACGTTGGGAAAGAGCATGCTCAATTGTTTCTCTTG
AAGGTCAAAGGAACAAACTAGTACCACCTACTGTAGTTCAACTGCTACGA
GGGGCACCTAGACAAGGGCTCTGACGGTGAGAGAACCTTCAAGCTATCTA
TGCCTGTTATCCAGATTTGCTGCAGCCGGCACACTCGTGGACTAGAATAT
CGGCTACCGTTGTTGTTGTACCTCGTGCAGGGGGCACTGCCCGGGTAAAG
GGCTCCTGGCGGTGGGACTTTAGCCTTTCACCCCTGGGGTCCGTATAATC
ATAGGGTTTTAGTGTGTACGTCCAATGTAGCAGGGGTAACAGGGTTAAGC
TCCTGGTGGGCGGAGGGACACTGATGTGATGTGATGTGATGCGATGTGAT
GCCAAACTATATTAAATTAGAGTGCACGTCACATCACATCACATCACATC
GCAGTAGTGTCCAGTACCCGGGCAAGGGCTCCTGGCGGTGTGGAACTTTA
GCCCTTGGAGGGAGCACTTCCCGACAGTAGGTCAATGGTCCCCGGACTAC
TTACTAGTATTGTAGTATTAGCAGGAACCACACGAGGCGGCCACGCGTCA
CTAAAGACCTCAACTGTGGCCCTTCCTTGGCTCGCCAGGGGAAATTTGTG
TGGGGAAGGGGAGAAGAGGAGGAGGGAGAGGTGGACGGGAGGAGGAGGAG
GAGTAGGAGTTACGGTGAGCGCAGCATGGGCACGTCCTTCGAATACCGTA
TAAGATGCCCCCAATTTCAGTATGTACTTATTTATATAGCTCTGCAGTAG
AGTAGGCAGGACTGTTCTTACCACCACTGCCCCCCGCGACAAAAAAAAAA
CGACGACGAAATACCTACTCTGTGCGTGTGAAGTCCAAGCAGCTGATTGA
CCTCCACCACTGCCGCACCCCAATGCCCCCCCCCCCCCCCCCCCCCCCTC
GCAAAAAAAAAACAAAAAACGACGTCGATATACTCAGTGCGTGAGAAGTC
CAAACAGCTGATCGACCTCCTCCAGGACAAGGACCAACCCCCCCCCCCCG
CACAACACAAAACGCCGACGATGTACCTACTCAGTGCGAGAGAAGTCCAA
GAGGCTGATCGATCCCAATTCCCCCCCCCCGGCCCTCCCCGCCCCCCGTG
CGACAACAACGACGACGACGACAATGTACTCAGTGCGTGAGAAGTCCAAG
CAGCTGATCGACCTCCTCAAGGACAATGACGCCATCCGCTCCGAGCGCGA
AAAGGCCCGGAAGCTACGGGACAAGTACGTGGGCTTGGGGAGCGGGGCGG
GCGGCTTTGGCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:1072525..1081188+

>mRNA_S-ischiensis_contig12.2591.1 ID=mRNA_S-ischiensis_contig12.2591.1|Name=mRNA_S-ischiensis_contig12.2591.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig12:1072525..1081188+ (Schizocladia ischiensis KU_0333)
ATGGATAAGCTTGCCCTGGACAAGCTGAGCCTGGACAAAATCAAGAACCT
GGCTGGCGAAGTATGGATAAGCTTGCCCTGGACAAGCTGAGCCTGGACAA
AATCAAGAACCTGGCTGGCGAAGTGCGGGACCGCGTGGCCCCTAGGAACG
ACACGGAGAGGAAGGTGTACGATGCCCTCTCCAACAAGAACTGGGGGGCG
TCCAGCACTCTCCTCAATGACATCGCCCGGGATACCTATGACTAGCGGGA
CCGCGTGGCCCCTAGGAACGACACGGAGAGGAAGGTGTACGATGCCCTCT
CCAACAAGAACTGGGGGGCGTCCAGCACTCTCCTCAATGACATCGCCCGG
GATACCTATGACTACGAGAAATACGGAATAGTCATGCCCCTCATATGGCA
GGCGCTCGACAGCCCCAGCCGCGAGTGGCGCAAGGTTTTTAAGCGAGAAA
TACGGAATAGTCATGCCCCTCATATGGCAGGCGCTCGACAGCCCCAGCCG
CGAGTGGCGCAAGGTTTTTAAGGCCCTGACGCTGATGGAACACCTGATCA
AGAATGGGAACGAGCGAGTGGTGGAGGACTCACGCGACCACCTGCACCGG
GTGCGCATGCTGTCCGACTTCAACTACTATGAGGGGCACCTAGACAAGGG
CTCGGGCGGCCCTGACGCTGATGGAACACCTGATCAAGAATGGGAACGAG
CGAGTGGTGGAGGACTCACGCGACCACCTGCACCGGGTGCGCATGCTGTC
CGACTTCAACTACTATGAGGGGCACCTAGACAAGGGCTCGGGCGTGCGTG
AGAAGTCCAAGCAGCTGATCGACCTCCTCAAGGACAATGACGCCATCCGC
TCCGAGCGCGAAAAGGCCCGGAAGCTACGGGACAAGTACGTGGGCTTGGG
GAGCGGGGCGGGCGGCTTTGGCGGCTGCGTGAGAAGTCCAAGCAGCTGAT
CGACCTCCTCAAGGACAATGACGCCATCCGCTCCGAGCGCGAAAAGGCCC
GGAAGCTACGGGACAAGTACGTGGGCTTGGGGAGCGGGGCGGGCGGCTTT
GGCGGC
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