mRNA_S-ischiensis_contig12.2576.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2576.1
Unique NamemRNA_S-ischiensis_contig12.2576.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig12.2576.1 vs. uniprot
Match: D8LFI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI6_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.150e-13
Identity = 79/193 (40.93%), Postives = 102/193 (52.85%), Query Frame = 2 
Query:   59 PPGPQLMRTEKAALLQRMAYKLERLPEERAQPFLREQLRLVVDLVMGGDGRRAQQXXQQDLLMPAWLQPSAEALCVPGLLAADPALRRPFYERFVRQAALHASNNTAAAXXXXXXXXXXXXXXXXXXXXXXXXAPPG--PGDLILHGLARDWLPGAARYWPVVLVDALLGAVDTSAPLRLAEDPLMKPLPAAA 631
            P  P L   E+   +QR+  +L+RL E   Q   + QL ++  LV   +G            MP W+Q  A  L + GL+AADPALRR F +R V++A   A+      XXXXXXXXXXXXXXXXXX         G  P  +I+H L  DW P   R+WP  + DALLG V+    L L +D  M+P   AA
Sbjct: 2983 PKSPFLSDQERKMFVQRLV-RLDRLSEVHVQSVFKLQLEVIDALVNVPEGST----------MPKWVQAEAPRLFMAGLMAADPALRRRFSQRLVKEAGTAAAXXXXXXXXXXXXXXXXXXXXXXXXGDAVTAGSSGASPSAVIMHALRLDWEPLQLRFWPAAVADALLGLVNGGRALSLEDDECMRPFVGAA 3164
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFI6_ECTSI1.150e-1340.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:860862..861722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size639
Cds size639
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2576.1prot_S-ischiensis_contig12.2576.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 860862..861722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.8530254-CDS-S-ischiensis_contig12:860861..8610781622815632.8530254-CDS-S-ischiensis_contig12:860861..861078Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 860862..861078 +
1695739816.8440912-CDS-S-ischiensis_contig12:860861..8610781695739816.8440912-CDS-S-ischiensis_contig12:860861..861078Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 860862..861078 +
1622815632.8635807-CDS-S-ischiensis_contig12:861132..8612641622815632.8635807-CDS-S-ischiensis_contig12:861132..861264Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 861133..861264 +
1695739816.8543563-CDS-S-ischiensis_contig12:861132..8612641695739816.8543563-CDS-S-ischiensis_contig12:861132..861264Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 861133..861264 +
1622815632.8743625-CDS-S-ischiensis_contig12:861432..8617221622815632.8743625-CDS-S-ischiensis_contig12:861432..861722Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 861433..861722 +
1695739816.8639002-CDS-S-ischiensis_contig12:861432..8617221695739816.8639002-CDS-S-ischiensis_contig12:861432..861722Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 861433..861722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2576.1

>prot_S-ischiensis_contig12.2576.1 ID=prot_S-ischiensis_contig12.2576.1|Name=mRNA_S-ischiensis_contig12.2576.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=213bp
GGGRGGCGSGSGRRFAAAAAAGAPADEDGEGGVAAADGLQVGAAAGGESA
ALFAGAAAAGGGSGDGRRRPKSAAAAAARSADAGVAPAERGGALCAGAAG
GGPGATPPLLRAFRPSGRAPCLQQHRCSHRCCPRRPGPEQGARARCARRR
AHCTPGPRGSHPTRPGPGLAAGGGPVLAGGPGGRPSRGGGHLGAAPIGGG
PTDETVAGGGGSG
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mRNA from alignment at S-ischiensis_contig12:860862..861722+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2576.1 ID=mRNA_S-ischiensis_contig12.2576.1|Name=mRNA_S-ischiensis_contig12.2576.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=861bp|location=Sequence derived from alignment at S-ischiensis_contig12:860862..861722+ (Schizocladia ischiensis KU_0333)
GGCGGTGGGCGCGGCGGGTGTGGGAGTGGGAGTGGAAGGCGTTTTGCTGC
AGCCGCCGCCGCCGGGGCCCCAGCTGATGAGGACGGAGAAGGCGGCGTTG
CTGCAGCGGATGGCCTACAAGTTGGAGCGGCTGCCGGAGGAGAGAGCGCA
GCCCTTTTTGCGGGAGCAGCTGCGGCTGGTGGTGGATCTGGTGATGGGCG
GCGACGGCCGAAGAGCGGCAGGGGCGGGGGCGGCGGCATCGCTGCCGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGATCTGCTGAT
GCCGGCGTGGCTCCAGCCGAGCGCGGAGGCGCTCTGTGTGCCGGGGCTGC
TGGCGGCGGACCCGGCGCTACGCCGCCCCTTCTACGAGCGTTTCGTCCGT
CAGGTATTTACGGGTTGGGTTCTGGTCTGCGTTGTTTCTCGTGCTCGCTC
GAAGAGTACCCTGGGCAGCGTTTCTGTCTGGTTGGGCATTGTTTCACTGT
AGTTATCCCATCACCGTCTGAGGGTTAAGCAAGCTCCCGAACAAGCACCC
CCCCCCGCCCGTCCGCACCAGGCCGCGCTCCATGCCTCCAACAACACCGC
TGCAGCCACCGCTGCTGCCCCCGCCGCCCAGGCCCAGAGCAAGGCGCCCG
GGCCCGCTGCGCCCGCCGCCGGGCCCACTGCACCCCCGGGCCCAGGGGAT
CTCATCCTACACGGCCTGGCCCGGGACTGGCTGCCGGGGGCGGCCCGGTA
CTGGCCGGTGGTCCTGGTGGACGCCCTTCTCGGGGCGGTGGACACCTCGG
CGCCGCTCCGATTGGCGGAGGACCCACTGATGAAACCGTTGCCGGCGGCG
GCGGCAGTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:860862..861722+

>mRNA_S-ischiensis_contig12.2576.1 ID=mRNA_S-ischiensis_contig12.2576.1|Name=mRNA_S-ischiensis_contig12.2576.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1278bp|location=Sequence derived from alignment at S-ischiensis_contig12:860862..861722+ (Schizocladia ischiensis KU_0333)
GGCGGTGGGCGCGGCGGGTGTGGGAGTGGGAGTGGAAGGCGTTTTGCTGC
AGCCGCCGCCGCCGGGGCCCCAGCTGATGAGGACGGAGAAGGCGGCGTTG
CTGCAGCGGATGGCCTACAAGTTGGAGCGGCTGCCGGAGGAGAGAGCGCA
GCCCTTTTTGCGGGAGCAGCTGCGGCTGGTGGTGGATCTGGTGATGGGCG
GCGACGGCCGAAGAGCGGGCGGTGGGCGCGGCGGGTGTGGGAGTGGGAGT
GGAAGGCGTTTTGCTGCAGCCGCCGCCGCCGGGGCCCCAGCTGATGAGGA
CGGAGAAGGCGGCGTTGCTGCAGCGGATGGCCTACAAGTTGGAGCGGCTG
CCGGAGGAGAGAGCGCAGCCCTTTTTGCGGGAGCAGCTGCGGCTGGTGGT
GGATCTGGTGATGGGCGGCGACGGCCGAAGAGCGCAGCAGCAGCAGCAGC
AAGATCTGCTGATGCCGGCGTGGCTCCAGCCGAGCGCGGAGGCGCTCTGT
GTGCCGGGGCTGCTGGCGGCGGACCCGGCGCTACGCCGCCCCTTCTACGA
GCGTTTCGTCCGTCAGCAGCAGCAGCAGCAGCAAGATCTGCTGATGCCGG
CGTGGCTCCAGCCGAGCGCGGAGGCGCTCTGTGTGCCGGGGCTGCTGGCG
GCGGACCCGGCGCTACGCCGCCCCTTCTACGAGCGTTTCGTCCGTCAGGC
CGCGCTCCATGCCTCCAACAACACCGCTGCAGCCACCGCTGCTGCCCCCG
CCGCCCAGGCCCAGAGCAAGGCGCCCGGGCCCGCTGCGCCCGCCGCCGGG
CCCACTGCACCCCCGGGCCCAGGGGATCTCATCCTACACGGCCTGGCCCG
GGACTGGCTGCCGGGGGCGGCCCGGTACTGGCCGGTGGTCCTGGTGGACG
CCCTTCTCGGGGCGGTGGACACCTCGGCGCCGCTCCGATTGGCGGAGGAC
CCACTGATGAAACCGTTGCCGGCGGCGGCGGCAGTGGCGCCGCGCTCCAT
GCCTCCAACAACACCGCTGCAGCCACCGCTGCTGCCCCCGCCGCCCAGGC
CCAGAGCAAGGCGCCCGGGCCCGCTGCGCCCGCCGCCGGGCCCACTGCAC
CCCCGGGCCCAGGGGATCTCATCCTACACGGCCTGGCCCGGGACTGGCTG
CCGGGGGCGGCCCGGTACTGGCCGGTGGTCCTGGTGGACGCCCTTCTCGG
GGCGGTGGACACCTCGGCGCCGCTCCGATTGGCGGAGGACCCACTGATGA
AACCGTTGCCGGCGGCGGCGGCAGTGGC
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