mRNA_S-ischiensis_contig12.2572.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2572.1
Unique NamemRNA_S-ischiensis_contig12.2572.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:783621..788521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size766
Cds size765
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.737472-UTR-S-ischiensis_contig12:783620..7836211622815632.737472-UTR-S-ischiensis_contig12:783620..783621Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 783621..783621 +
1695739816.7753923-UTR-S-ischiensis_contig12:783620..7836211695739816.7753923-UTR-S-ischiensis_contig12:783620..783621Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 783621..783621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.7491796-CDS-S-ischiensis_contig12:783621..7837111622815632.7491796-CDS-S-ischiensis_contig12:783621..783711Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 783622..783711 +
1695739816.788243-CDS-S-ischiensis_contig12:783621..7837111695739816.788243-CDS-S-ischiensis_contig12:783621..783711Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 783622..783711 +
1622815632.761455-CDS-S-ischiensis_contig12:784485..7845871622815632.761455-CDS-S-ischiensis_contig12:784485..784587Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 784486..784587 +
1695739816.7978837-CDS-S-ischiensis_contig12:784485..7845871695739816.7978837-CDS-S-ischiensis_contig12:784485..784587Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 784486..784587 +
1622815632.7739582-CDS-S-ischiensis_contig12:785294..7854861622815632.7739582-CDS-S-ischiensis_contig12:785294..785486Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 785295..785486 +
1695739816.8061676-CDS-S-ischiensis_contig12:785294..7854861695739816.8061676-CDS-S-ischiensis_contig12:785294..785486Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 785295..785486 +
1622815632.784249-CDS-S-ischiensis_contig12:786242..7863471622815632.784249-CDS-S-ischiensis_contig12:786242..786347Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 786243..786347 +
1695739816.8150105-CDS-S-ischiensis_contig12:786242..7863471695739816.8150105-CDS-S-ischiensis_contig12:786242..786347Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 786243..786347 +
1622815632.8025398-CDS-S-ischiensis_contig12:787713..7877881622815632.8025398-CDS-S-ischiensis_contig12:787713..787788Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 787714..787788 +
1695739816.8240995-CDS-S-ischiensis_contig12:787713..7877881695739816.8240995-CDS-S-ischiensis_contig12:787713..787788Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 787714..787788 +
1622815632.8161652-CDS-S-ischiensis_contig12:788320..7885211622815632.8161652-CDS-S-ischiensis_contig12:788320..788521Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 788321..788521 +
1695739816.8341038-CDS-S-ischiensis_contig12:788320..7885211695739816.8341038-CDS-S-ischiensis_contig12:788320..788521Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 788321..788521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2572.1prot_S-ischiensis_contig12.2572.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 783622..788521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2572.1

>prot_S-ischiensis_contig12.2572.1 ID=prot_S-ischiensis_contig12.2572.1|Name=mRNA_S-ischiensis_contig12.2572.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=255bp
MVVAEDGEGIDAREEKALYKKFLDMYAHLKAHHKLMDKYITGQRELKEES
AEVSASHLRTIKAKSQMLWSTMGQVQKQMMDRKQAMDELQEEWRQAQRAG
AQPMSPNTFDEKNRGNEHQIERAKRRIKSLKKDLHDIEKWKQNHENHEKI
VAEDLNRHAAAVSRATEPYTKLREALREQSSLTNEMITFSELHGPWIFNK
PDSEGEEENEGDSDNNLGSSTPMLNKIAPRPDQTRGEEAAAAALAAVMSA
AVAAG
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mRNA from alignment at S-ischiensis_contig12:783621..788521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2572.1 ID=mRNA_S-ischiensis_contig12.2572.1|Name=mRNA_S-ischiensis_contig12.2572.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4901bp|location=Sequence derived from alignment at S-ischiensis_contig12:783621..788521+ (Schizocladia ischiensis KU_0333)
GATGGTTGTTGCCGAGGACGGGGAGGGCATTGACGCGCGGGAGGAGAAGG
CGCTGTACAAGAAGTTTTTGGACATGTACGCCCACCTCAAGGTGAGGAAA
CCCTTTTCGTAGAGTTGTGAACTGGAAATTCCTACCAGTTTCACTGTTAT
CCGGTTGCATGACCGGTCGGTTTTGACCCGCTTGCCGGTAACGGCTAGCT
TGTTGCCAACATCAACGAGCAACAGTCATGTCACCCGCTCCGGCTACACG
ATTGGCCACCAGTCGCTTAACCAGTTAAACCGGCTAGCTGGTACCGACCG
GTAGAAACCGGCACCAGTTCACAACGCTACCTTTTCGAGGAGGATGGGAT
GCCGACGTGATGTGATGTGATGAGTGCTCTACTGTGGTGTACCGTAATAT
GACGCCGCATTGATGTGATGTGATGTGATGCGAAAAGTACACTGAACGAA
AGTACCCCTACTTGACGTGTAGCAACCTGAAGACCGCGACCCTGGCGCTG
AGTCCGGACCCGAACCTTGCGGCCGCTCACAACCCCATAGCGTACCGTAA
TCGTCGGAGAGATCTTGCCGCCCCATGCCAATTTTCGGGACAAAGTTTCT
AGCCGAATACTGGTCGGATTTGCACAGGAAAACTCGGAAAAACTCCCTTC
GGACCTGGAGGAAATGTTTCGGGTGAATTTCGGGACAATTTGGGACCCAT
TTGGCGAGACATTCTCCCGAAAATTGTCCCGTGGGGGCAAGAACCCAAAA
TCAAAGTGTAACCCTGCTTGAAGCGGAACCACTTAGCAACCCTCAAGACT
GCAACCCTGACGCTGAGCTCGGGCCCGAACCTTGCCGCTGCCGCTGCCCC
CGTGGTCGACCGCAGGCTCACCACAAGCTCATGGACAAGTACATCACCGG
GCAGAGGGAGCTCAAGGAGGAGTCGGCCGAGGTCAGCGCGTCGCACCTCA
GGACCATCAAGGCAAAGGTGAGGAGGGCAAAATACCGTATTTGAGTGGTA
GATAAGCGGCGAGTTCCAGTGCCAAAAGGCTCATCCCAAGACAGGACTCA
ACAAAACCCTTCCTTCCCTCGCAGCGCAAGAAGTACAATTTATAGGAATC
ACCGACAACAATCTACTGGTCGATATCCCATTTCATCACTGCCGTAGCCG
CCCCCCCACCCCGAGCAGAGTGCCATGCTGTGGTCCACGACGGGGCAGGT
GCAATATATCTACGGACGATTGATTTTCGATAGTTTGACCCACTAATCCA
AGTACTTGAGTAATGCCACCCACAAAATCAGTCAAGCTGATCGATATCCC
ATCACTGCCTCCTGCCCACACCGAGCGGAGCCAAATGCAGAAGCAGATGA
TGGAGCGGAAACGGGCGATGGATGAGCTGCAGGAGGAGTGGCGATAACTA
TCTTGATGTGATTATATTGATGTGATAATCACTACTACGCGTACGCTCAA
TTTTAGAATGAAGATAAACAAGCGAGTGGGAAGGAAGAGGTGTTCCCACT
TACGCGAGTTCAGGACCCCCAACATACACTCAATTCTGAAATGGGACCAC
CACTATACGAGAACGCTCAATCTCACACACGTGCGATTGTACCTCGTTCC
AATATACGTGAATCATCGATAACTATCTACTGATCGACATTCCATCACTG
CCCCCCCCCCCCCACGCCGAGCAGAGCCAAATGCTGTGGTCCACCATGGG
GCAGGTGCAGAAGCAGATGATGGACCGAAAGCAGGCAATGGATGAGCTGC
AGGAGGAGTGGCGGCAGGCGCAGAGGGCAGGGGCTCAGCCCATGTCCCCC
AACACCTTCGATGAGAAGAACCGGGGGAACGAGCACCAGATCGAGCGGGC
CAAACGCCGGATCAAGGTGATTCATACTTCCAAGTATCAATTGTAGCGAG
GTACAATCGCACGTGTGCGAGATTGAGGGTTCTCGTACTACCTACTGTGG
TAGTTGTAAGAGGGCCGGGGCGCAGCCCATGTCCCCCAACGCGTTCGACG
AGAAGGACGGGGGAACGAGCACCAGATCGAGCAGGGCAAACACCGCATCA
AGGTGTGGGCGAGGGCCGAGTCCGATGGATCGAGTAGTGTTAGAAATCTC
CTCGCCAAACGACTTGGTTTCGTTATCGGAGAATGTTTTGAGGTGAAAAT
AGAAATTGGTGTACCGGGCTGTTTCTAGGTTTCGGTTACGGTTAGGGGTA
TTGGTTGGGTGGGTAATTTCTAACACGCCTCGATCGATCTTCAAGCTTCA
GTTGTCAAGCTCGTGGCCTGCAACGCTGGGACTCGCCATCCCCCCCTCCT
TCCCTCTCTTCCCACCTCCCCTTCTACCTGCCCCCAAATCCCTCATTCCC
TCCCCCCCTCCCTCGATCCTCCATCCCGCCCGCCCTCCCTCCCTCTCTCT
ACCCCTCCCTCCCTAACCCGCTCCGCCCATCCCTACCTCCGCTCCCCCCC
CCATCCGCTCCGTAACCACCATAGCTGCCGTGTAGCTGTCGTGCAACTGT
CAGACCCTCAAGAAGGACCCCCACCTCTCCGTCCTAACCCGCTCCGCCCA
TCCCTACCCCCCCATCCCCCAATCCGCTCCGCAACCGCCGTAACTGCCGT
GTAACTGTCGTGTAACTGTCAGTCCCTCAAGAAGGACCTGCACGACATTG
AGAAATGGAAGCAGAACCACGAGAACCACGAGAAGATCGTGGCCGAGGAC
CTGAACCGCCACGCGGCGGCCGTGTCGGTGAGTGACGAAAATAAGCGTTG
TTGTTGCCATGGTAGGTATTGTGCACTGTATAGTATTAACGGCAACAACA
CGGGGCGAGGTGCGGGCCACGCCACTAAAGACCTCAGCAGTGGCCCTTCC
ATATAGGTCGCCAGGGAAACCTGTGGTGGGAAGGGGAGAAGAGCAGGAGG
GGGAGGTGGACAGGGAGGAGGAGGAGGAGGAGTATACTGTAGTAATTGGC
TAGTCCTCCGGCTCGCCAGCTTGCGCTGCAAAACGTTTGCGGTTCATGTG
TGTGCGTGTGTGTGCGTGTGTGCGTATGTGTGTGCGTGTGTGTGTTTGTG
TGTTTTGCATTCCTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGCATGTGTGCCTGTGCGTGTGTAGCGCAGGGTGCGACATCAAAGGGCA
GTACCTACTCGTACATTACAGAGTACAGAGTGTTGCTTCCCGGTACGGTA
CATATTACATATCGAATGCTAAGACCCGTGACGAGCCCCCCCTCCAATGT
CTCTCCTCTGTCTCGGCGGCAAACAACGAGCTACTGCTGTGAAAAAAAAA
GGAGTGTTGCTTGCCAGCACGGTATGTATTACTTCCGGAAGTACATATCG
AATGCTAAGACCCCTGATGCCCACCCCCCCCCGCCCCCTTTGCGCTCCTC
TGTCTCGGCGGTACATATTACACATCGAATGCCCCTGATGACCCCCTGCA
CGCTCCTCTGAGTGTCGCTTCCCAGTACGGTACATACTACATATCGAATG
CTAGGACCTCTGATGATCCCCCTGCGCAGTCCTCTTTTCCTCTTACATAT
CGAATGCTAAAACCCCCCCCAACCCCCCCCCGCTGTGCACTCCTCTGTCT
CGGCGGCAAACAGCGAGCTACTACTGTGATAAAATGAGTGTTGCTTCCCA
GGACGGTACATATTTTGAGTGGTAGATAGGCGGCGAGTTCCAGGCCCCGT
GCCAAAAGGCTCGTCCCAAAACGGGACTCAACGAAGCCCTTCTTCCCCTC
GCAGGGCAAAGAGAAAACAGATACAAAGAAGGAACGGGGCGGGGCAGGGA
AAAGGAAGGGGCGGGGAAGGGGAGTCTCTTGTGCTCACAGTGGGGCATGC
GGGTAGGGCGGGCGGGGCGAGACCGGACACAATCTCCGAGACCACGACGT
ACCTGTAGGAGCGCACGTAGACCAGAGAGTGTTATATATCGAATGCTAAG
ATCCCTGATGGAAACACCCCCCACCCCCCCTTTGCGCTCCTCTGTCGCGG
CGGCAAACTTCCCAGTATAATACATACTATGTATCGAATGCTAGGACACC
TGATGACCCCCCCTTTGTGCTCCTCTGTCTCGGCGGCAAACAGCGAGCCA
CGGAGCCGTACACCAAGCTAAGGGAGGCCCTCCGCGAGCAGTCCTCACTC
ACCAATGAGATGATCACGGTGCGTATTGTAGCCACCTGTTTAGGAGCAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGGGGCGGGGGGGGGGGGAGGAGGG
GGAGGGGGGGGAGGGGGAGGGTGAGGGGTAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGGGGTAAGGGGGGGGGGGGGGGGGGGGTGGAGGAGGAGG
AGGAGGAGGAGGAGGGGGAGGAGATACCGTACTTTATTGTGGCCATCCTA
TGCATTCAGTAGAGTGCTGTGAGGAGTACCACAATAGAATCCAGTATTTC
TAGTGCTGCAGTGCCTGTGCGTTAATGCCATGGACACCCAGAAATACAGT
ATGTACAGCACAGTACTCGTATACACTTTTGAGGAATGTGCTCCAAGTGC
AAGTATATACTGTACTCGTAGTACTTTGAAGTATATGTATCTGCCTTTTA
TGCACGTACCGGGGTGTGCGGTAGGTGTCAGCTATGGCAGAGACTCCCTC
GACAGTTAGAATTTACATGAATCGCCGCCGCCACTGCCGTGACCGACCAG
TTCTCCGAGTTGCACGGGCCGTGGATCTTCAACAAGCCGGACTCGGAGGG
GGAGGAGGAGAACGAAGGCGACTCGGACAACAACCTAGGCTCCTCGACCC
CCATGCTCAATAAGATCGCCCCCCGCCCGGACCAAACGCGGGGGGAGGAG
GCGGCGGCGGCGGCACTGGCGGCGGTCATGTCCGCGGCGGTGGCAGCAGG
G
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:783621..788521+

>mRNA_S-ischiensis_contig12.2572.1 ID=mRNA_S-ischiensis_contig12.2572.1|Name=mRNA_S-ischiensis_contig12.2572.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1530bp|location=Sequence derived from alignment at S-ischiensis_contig12:783621..788521+ (Schizocladia ischiensis KU_0333)
ATGGTTGTTGCCGAGGACGGGGAGGGCATTGACGCGCGGGAGGAGAAGGC
GCTGTACAAGAAGTTTTTGGACATGTACGCCCACCTCAAGATGGTTGTTG
CCGAGGACGGGGAGGGCATTGACGCGCGGGAGGAGAAGGCGCTGTACAAG
AAGTTTTTGGACATGTACGCCCACCTCAAGGCTCACCACAAGCTCATGGA
CAAGTACATCACCGGGCAGAGGGAGCTCAAGGAGGAGTCGGCCGAGGTCA
GCGCGTCGCACCTCAGGACCATCAAGGCAAAGGCTCACCACAAGCTCATG
GACAAGTACATCACCGGGCAGAGGGAGCTCAAGGAGGAGTCGGCCGAGGT
CAGCGCGTCGCACCTCAGGACCATCAAGGCAAAGAGCCAAATGCTGTGGT
CCACCATGGGGCAGGTGCAGAAGCAGATGATGGACCGAAAGCAGGCAATG
GATGAGCTGCAGGAGGAGTGGCGGCAGGCGCAGAGGGCAGGGGCTCAGCC
CATGTCCCCCAACACCTTCGATGAGAAGAACCGGGGGAACGAGCACCAGA
TCGAGCGGGCCAAACGCCGGATCAAGAGCCAAATGCTGTGGTCCACCATG
GGGCAGGTGCAGAAGCAGATGATGGACCGAAAGCAGGCAATGGATGAGCT
GCAGGAGGAGTGGCGGCAGGCGCAGAGGGCAGGGGCTCAGCCCATGTCCC
CCAACACCTTCGATGAGAAGAACCGGGGGAACGAGCACCAGATCGAGCGG
GCCAAACGCCGGATCAAGTCCCTCAAGAAGGACCTGCACGACATTGAGAA
ATGGAAGCAGAACCACGAGAACCACGAGAAGATCGTGGCCGAGGACCTGA
ACCGCCACGCGGCGGCCGTGTCGTCCCTCAAGAAGGACCTGCACGACATT
GAGAAATGGAAGCAGAACCACGAGAACCACGAGAAGATCGTGGCCGAGGA
CCTGAACCGCCACGCGGCGGCCGTGTCGCGAGCCACGGAGCCGTACACCA
AGCTAAGGGAGGCCCTCCGCGAGCAGTCCTCACTCACCAATGAGATGATC
ACGCGAGCCACGGAGCCGTACACCAAGCTAAGGGAGGCCCTCCGCGAGCA
GTCCTCACTCACCAATGAGATGATCACGTTCTCCGAGTTGCACGGGCCGT
GGATCTTCAACAAGCCGGACTCGGAGGGGGAGGAGGAGAACGAAGGCGAC
TCGGACAACAACCTAGGCTCCTCGACCCCCATGCTCAATAAGATCGCCCC
CCGCCCGGACCAAACGCGGGGGGAGGAGGCGGCGGCGGCGGCACTGGCGG
CGGTCATGTCCGCGGCGGTGGCAGCAGGGTTCTCCGAGTTGCACGGGCCG
TGGATCTTCAACAAGCCGGACTCGGAGGGGGAGGAGGAGAACGAAGGCGA
CTCGGACAACAACCTAGGCTCCTCGACCCCCATGCTCAATAAGATCGCCC
CCCGCCCGGACCAAACGCGGGGGGAGGAGGCGGCGGCGGCGGCACTGGCG
GCGGTCATGTCCGCGGCGGTGGCAGCAGGG
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