mRNA_S-ischiensis_contig12.2562.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2562.1
Unique NamemRNA_S-ischiensis_contig12.2562.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:659494..659917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.159688-CDS-S-ischiensis_contig12:659493..6599161622815638.159688-CDS-S-ischiensis_contig12:659493..659916Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 659494..659916 +
1695739819.7411737-CDS-S-ischiensis_contig12:659493..6599161695739819.7411737-CDS-S-ischiensis_contig12:659493..659916Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 659494..659916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2562.1prot_S-ischiensis_contig12.2562.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 659494..659916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2562.1

>prot_S-ischiensis_contig12.2562.1 ID=prot_S-ischiensis_contig12.2562.1|Name=mRNA_S-ischiensis_contig12.2562.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=141bp
DGDGGGAGEATAKGRRRSSDVGGRTGTDDAAREGTGADNARAKATTATTT
KKATTAGGRPDEETAVPRGTTGAGTANPPPPRSSSFSSSPSSSALVVTVI
RAADLALALPKTAFGRARKGATQDPYVRVTLGGVSGRTSAV
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mRNA from alignment at S-ischiensis_contig12:659494..659917+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2562.1 ID=mRNA_S-ischiensis_contig12.2562.1|Name=mRNA_S-ischiensis_contig12.2562.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=424bp|location=Sequence derived from alignment at S-ischiensis_contig12:659494..659917+ (Schizocladia ischiensis KU_0333)
GACGGCGACGGTGGCGGGGCGGGGGAGGCGACTGCCAAGGGCCGGCGGAG
GAGCAGCGACGTAGGAGGGCGGACGGGAACAGACGATGCCGCTCGCGAAG
GCACCGGGGCCGATAACGCTCGTGCAAAAGCAACAACAGCGACGACGACG
AAGAAAGCAACAACAGCCGGCGGCCGGCCTGATGAAGAGACTGCCGTGCC
TCGGGGGACCACGGGGGCCGGAACCGCGAATCCTCCTCCTCCCCGGTCTT
CTTCCTTTTCTTCTTCTCCCTCTTCTTCCGCCTTGGTCGTGACCGTTATC
CGCGCAGCCGACCTGGCGCTGGCCCTCCCCAAGACCGCCTTCGGCCGCGC
GCGCAAGGGGGCCACGCAGGACCCCTACGTACGCGTCACCCTGGGCGGCG
TCTCCGGCCGCACCTCCGCCGTCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:659494..659917+

>mRNA_S-ischiensis_contig12.2562.1 ID=mRNA_S-ischiensis_contig12.2562.1|Name=mRNA_S-ischiensis_contig12.2562.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=846bp|location=Sequence derived from alignment at S-ischiensis_contig12:659494..659917+ (Schizocladia ischiensis KU_0333)
GACGGCGACGGTGGCGGGGCGGGGGAGGCGACTGCCAAGGGCCGGCGGAG
GAGCAGCGACGTAGGAGGGCGGACGGGAACAGACGATGCCGCTCGCGAAG
GCACCGGGGCCGATAACGCTCGTGCAAAAGCAACAACAGCGACGACGACG
AAGAAAGCAACAACAGCCGGCGGCCGGCCTGATGAAGAGACTGCCGTGCC
TCGGGGGACCACGGGGGCCGGAACCGCGAATCCTCCTCCTCCCCGGTCTT
CTTCCTTTTCTTCTTCTCCCTCTTCTTCCGCCTTGGTCGTGACCGTTATC
CGCGCAGCCGACCTGGCGCTGGCCCTCCCCAAGACCGCCTTCGGCCGCGC
GCGCAAGGGGGCCACGCAGGACCCCTACGTACGCGTCACCCTGGGCGGCG
TCTCCGGCCGCACCTCCGCCGTCGACGGCGACGGTGGCGGGGCGGGGGAG
GCGACTGCCAAGGGCCGGCGGAGGAGCAGCGACGTAGGAGGGCGGACGGG
AACAGACGATGCCGCTCGCGAAGGCACCGGGGCCGATAACGCTCGTGCAA
AAGCAACAACAGCGACGACGACGAAGAAAGCAACAACAGCCGGCGGCCGG
CCTGATGAAGAGACTGCCGTGCCTCGGGGGACCACGGGGGCCGGAACCGC
GAATCCTCCTCCTCCCCGGTCTTCTTCCTTTTCTTCTTCTCCCTCTTCTT
CCGCCTTGGTCGTGACCGTTATCCGCGCAGCCGACCTGGCGCTGGCCCTC
CCCAAGACCGCCTTCGGCCGCGCGCGCAAGGGGGCCACGCAGGACCCCTA
CGTACGCGTCACCCTGGGCGGCGTCTCCGGCCGCACCTCCGCCGTC
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