mRNA_S-ischiensis_contig12.2550.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2550.1
Unique NamemRNA_S-ischiensis_contig12.2550.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:554363..555981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size526
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2550.1prot_S-ischiensis_contig12.2550.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 554611..555981 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.155823-UTR-S-ischiensis_contig12:554362..5546101622815632.155823-UTR-S-ischiensis_contig12:554362..554610Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 554363..554610 +
1695739816.3456428-UTR-S-ischiensis_contig12:554362..5546101695739816.3456428-UTR-S-ischiensis_contig12:554362..554610Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 554363..554610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.1670074-CDS-S-ischiensis_contig12:554610..5546931622815632.1670074-CDS-S-ischiensis_contig12:554610..554693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 554611..554693 +
1695739816.358076-CDS-S-ischiensis_contig12:554610..5546931695739816.358076-CDS-S-ischiensis_contig12:554610..554693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 554611..554693 +
1622815632.1805816-CDS-S-ischiensis_contig12:555788..5559811622815632.1805816-CDS-S-ischiensis_contig12:555788..555981Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 555789..555981 +
1695739816.378443-CDS-S-ischiensis_contig12:555788..5559811695739816.378443-CDS-S-ischiensis_contig12:555788..555981Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 555789..555981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2550.1

>prot_S-ischiensis_contig12.2550.1 ID=prot_S-ischiensis_contig12.2550.1|Name=mRNA_S-ischiensis_contig12.2550.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=92bp
MGPGGGAAAGGKGPDAGSYPPRQSEPLRNTRRRRARGRAGNGGGRGGGGW
ATGGAALCGGDCPVRVSRRNPNRGFVGGGFALAGGDGIRGGC
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mRNA from alignment at S-ischiensis_contig12:554363..555981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2550.1 ID=mRNA_S-ischiensis_contig12.2550.1|Name=mRNA_S-ischiensis_contig12.2550.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1619bp|location=Sequence derived from alignment at S-ischiensis_contig12:554363..555981+ (Schizocladia ischiensis KU_0333)
GACCAACCGCGTTCTCAGGATGAGGTGCGATCCAAGCCGCCGGCCGAGCT
ACAATTAAACCCCAATAAGACTTAAATTATTACTTTATTTTGAAACACAA
GAAAATCTATTCACTTTGGACGATATTATTAAATCAAACTTGACAAGTAA
CAATAGTTTTATTCCCCCCCCCCTGACCAACCGCCTTCGCAGGGTGAGCC
GCGGTCCAAGCCGCCGGCCGAGTGGCGGGCCGATCGCCGCATCCTCAAAT
GGGCCCTGGGGGGGGAGCTGCGGCCGGGGGGAAAGGCCCAGATGCAGGCT
CATATCCCCCTCGCCAATCAGAGCCACTTAGGTGAGATCAGGGTTTGCAC
TCAACGCCTAAGTGGTGCCCTTTACGAGTAGCTCCTTAATTAGAGGTAGT
TAGGGGTAATCAGACCTAAAACGAAGGCTATTTAGGCCATAATTAACCTC
TATGCCGGGGGGAAAGGCCCAGGTGCAGGTGCATATCCCCCTCGCCAATC
AGAGCCACGCCGCCGGTGAATTCAGGGTTGTCACTTAACCCCTAAGTGGA
GCCCTTTTAGGCCCTTACTTAGGGGTAGTTAGGGGTATTGAGACCTAAAA
CGAAGGCCAATTAGGCCATCATCAGATGCAGGGCCATATCCCCCTTGCCA
ATCAGAGCCACACCGTCGCCGGTGAGGTCAGGGTTGGAACTTACAGTAGA
GGTTAATAGGGCCTTCATTTTAGGTCTAGTTACCCCTAATTGTCTCTAGT
TAAACGCCCAGATGCGGACGCATATCCCCCTCGCCAATCAGAGCCACGCC
GTCGCCGCCGCCGGTGAGATGGGCCTTTGATGTGTGGGCAAACGGGGTGA
GTTTCCGAAATTTGATACGCTTCACCCACCTATGTCTCGACCGAGGCGCG
TGGTCAATGGTCTTGGGACTACGGCAAGCACAACGTGAGTACATATATAT
ATATATATATATGTACTCGTGATACTACACTATACATAGTTGTGGTGGCA
TGCCTACCTGAGTCCCCCCCGACCCCCACCCACCCTAAGTATCTAAGCAA
ATCAGCCTATTTATCGACAGTACCGATCTACATATCTATCGATATCGTAG
TCGATATTCAATAGTTTGACCGACACTAAATCCAAGTACTTCGAAGTAGT
TAGTAACACCACCCACAAAATCAGCCGAGCCCGATACCTATCTGCTCGTA
CTGATCGATAGTCCACCACTGCACCCAACTCTACCCTCTAAAACGCCGTC
CAACCCCCCAGGAACACACGACGGCGCCGGGCCTGGCCCCGGGGCCAACG
CGTCACCATCTAAAGTAACACGTAAACCTTTCCCCGAACACTACACACAG
TTTTGTGGCGGCATACATGAGTCACCCCCGACCCCCACCCAACCATACCC
TATCAAAACGCCGTCCAACTCCCCAGGAACACCCGACGGCGCCGGGCCCG
GGGCAGGGCCGGCAACGGCGGCGGTAGAGGAGGTGGCGGGTGGGCCACTG
GCGGTGCCGCCCTCTGCGGCGGTGATTGCCCAGTGCGAGTGTCGCGGCGA
AACCCTAACAGAGGTTTCGTTGGAGGTGGGTTTGCACTCGCAGGAGGCGA
TGGCATTCGCGGCGGGTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:554363..555981+

>mRNA_S-ischiensis_contig12.2550.1 ID=mRNA_S-ischiensis_contig12.2550.1|Name=mRNA_S-ischiensis_contig12.2550.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=552bp|location=Sequence derived from alignment at S-ischiensis_contig12:554363..555981+ (Schizocladia ischiensis KU_0333)
ATGGGCCCTGGGGGGGGAGCTGCGGCCGGGGGGAAAGGCCCAGATGCAGG
CTCATATCCCCCTCGCCAATCAGAGCCACTTAGATGGGCCCTGGGGGGGG
AGCTGCGGCCGGGGGGAAAGGCCCAGATGCAGGCTCATATCCCCCTCGCC
AATCAGAGCCACTTAGGAACACCCGACGGCGCCGGGCCCGGGGCAGGGCC
GGCAACGGCGGCGGTAGAGGAGGTGGCGGGTGGGCCACTGGCGGTGCCGC
CCTCTGCGGCGGTGATTGCCCAGTGCGAGTGTCGCGGCGAAACCCTAACA
GAGGTTTCGTTGGAGGTGGGTTTGCACTCGCAGGAGGCGATGGCATTCGC
GGCGGGTGCGAACACCCGACGGCGCCGGGCCCGGGGCAGGGCCGGCAACG
GCGGCGGTAGAGGAGGTGGCGGGTGGGCCACTGGCGGTGCCGCCCTCTGC
GGCGGTGATTGCCCAGTGCGAGTGTCGCGGCGAAACCCTAACAGAGGTTT
CGTTGGAGGTGGGTTTGCACTCGCAGGAGGCGATGGCATTCGCGGCGGGT
GC
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