mRNA_S-ischiensis_contig12.2543.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig12.2543.1 vs. uniprot
Match: A0A6H5L227_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L227_9PHAE) HSP 1 Score: 140 bits (353), Expect = 1.980e-35 Identity = 78/144 (54.17%), Postives = 97/144 (67.36%), Query Frame = 1
Query: 52 AARTIIAGSVAGIASTVVCHPMDTIRTRLQTAGG-GQCMGVRACFVATVRDEGLLALYKGLSFPLAAQAAYKAVIFSVNGAAQAALSEWGLEHTTGGVFACGALSGATNALVVTPVELVRNNLMLQHDDAHLRRLRKGWKPESS 480
AAR I+AG AG+ S + +PMDT+RTRLQ AG G+ +GVR+C T R+EG+ A YKG++FPLAAQ +KAVIF+ NG A+ AL GL + GV+ACGAL G N+ +VTPVELVR LMLQH G KP SS
Sbjct: 13 AARDIMAGGCAGMVSISIMYPMDTVRTRLQMAGSQGKTLGVRSCVANTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRGLADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQH----------GRKPASS 146
BLAST of mRNA_S-ischiensis_contig12.2543.1 vs. uniprot
Match: F0YHQ3_AURAN (Cofac_haem_bdg domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHQ3_AURAN) HSP 1 Score: 128 bits (322), Expect = 1.910e-29 Identity = 72/130 (55.38%), Postives = 90/130 (69.23%), Query Frame = 1
Query: 40 MGDAAARTIIAGSVAGIASTVVCHPMDTIRTRLQTAGGGQCMGVRACFVATVRDEGLLALYKGLSFPLAAQAAYKAVIFSVNGAAQAALSE--WGLEHTTGGVFACGALSGATNALVVTPVELVRNNLML 423
M AART++AG+ G AS +VCHP+DTIRTRLQTA G+ G C VA+VR EG+ ALYKGL PL AQ AYKA++F V GA + ++E E +FACGA++G NALV+TPVELVRN L +
Sbjct: 1543 MKSEAARTLVAGTCGGCASILVCHPLDTIRTRLQTAAPGEYAGAWDCAVASVRAEGVAALYKGLLVPLLAQGAYKAIMFGVYGACRRRVTESTGRSELKPSEIFACGAVAGGANALVLTPVELVRNRLQV 1672
BLAST of mRNA_S-ischiensis_contig12.2543.1 vs. uniprot
Match: A0A7S3ZRV2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRV2_9STRA) HSP 1 Score: 111 bits (278), Expect = 5.290e-26 Identity = 67/132 (50.76%), Postives = 80/132 (60.61%), Query Frame = 1
Query: 58 RTIIAGSVAGIASTVVCHPMDTIRTRLQTAGGGQCMGVRACFVATVRDEGLLALYKGLSFPLAAQAAYKAVIFSVNGAAQAALSEWGLEHTTGG--VFACGALSGATNALVVTPVELVRNNLMLQHDDAHLR 447
RT+I+G+ GIAS + HP+DT+RTRLQ A G G C TVR EG LALYKGL++PLAAQ YKAV+F V GAA AL VFA G ++G NALV+ PVELVRN + LR
Sbjct: 8 RTVISGTAGGIASILAVHPLDTVRTRLQAAPAGAYRGAWHCARVTVRREGPLALYKGLAWPLAAQGLYKAVMFGVYGAASRALRGGDPARPLAAHEVFAAGGVAGGANALVLAPVELVRNRFQVAAGRTTLR 139
BLAST of mRNA_S-ischiensis_contig12.2543.1 vs. uniprot
Match: A0A6U3AS15_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U3AS15_9EUKA) HSP 1 Score: 113 bits (283), Expect = 5.610e-26 Identity = 63/127 (49.61%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 58 RTIIAGSVAGIASTVVCHPMDTIRTRLQTA--GGGQCMGVRACFVATVRDEGLLALYKGLSFPLAAQAAYKAVIFSVNGAAQAALSEWGLEHTTGGVFACGALSGATNALVVTPVELVRNNLMLQHD 432
+ +I+GS AGI++T++ HP+DTIRTR+QTA G Q G C T++ EGL A YKG++FPL AQA YK+VIF+ A Q+ + V CGA +G N+ VVTPVEL+RNNLM+Q+D
Sbjct: 9 KQVISGSAAGISATLLVHPLDTIRTRVQTADVSGVQYRGAIDCAAKTLKYEGLQAFYKGITFPLLAQAVYKSVIFTSYHAMQSLFPQTDGPPPIPRVMLCGAAAGGINSFVVTPVELIRNNLMVQYD 135
BLAST of mRNA_S-ischiensis_contig12.2543.1 vs. uniprot
Match: A0A7S2TIU0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TIU0_9EUKA) HSP 1 Score: 113 bits (283), Expect = 6.470e-26 Identity = 67/136 (49.26%), Postives = 90/136 (66.18%), Query Frame = 1
Query: 58 RTIIAGSVAGIASTVVCHPMDTIRTRLQTA--GGGQCMGVRACFVATVRDEGLLALYKGLSFPLAAQAAYKAVIFSVNGAAQAALSEWGLEHTTGGVFACGALSGATNALVVTPVELVRNNLMLQHDDA-HLRRLR 456
+ II+GS AGI++T++ HP+DTIRTR+QTA G + G C V T++ EG A YKG++FPL AQA YK+VIF+ A Q+ + V CGA++G N+ VVTPVEL+RNNLM+Q+D RRLR
Sbjct: 15 KQIISGSAAGISATLLVHPLDTIRTRVQTADVSGVRYRGALDCAVKTMKHEGFQAFYKGITFPLLAQAVYKSVIFTSYQAMQSLFPQIEGPPPIPRVMFCGAVAGGINSFVVTPVELIRNNLMVQYDHKMEGRRLR 150
BLAST of mRNA_S-ischiensis_contig12.2543.1 vs. uniprot
Match: A0A7S4E647_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E647_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.610e-25 Identity = 67/132 (50.76%), Postives = 80/132 (60.61%), Query Frame = 1
Query: 58 RTIIAGSVAGIASTVVCHPMDTIRTRLQTAGGGQCMGVRACFVATVRDEGLLALYKGLSFPLAAQAAYKAVIFSVNGAAQAALSEWGLEHTTGG--VFACGALSGATNALVVTPVELVRNNLMLQHDDAHLR 447
RT+I+G+ GIAS + HP+DT+RTRLQ A G G C TVR EG LALYKGL++PLAAQ YKAV+F V GAA AL VFA G ++G NALV+ PVELVRN + LR
Sbjct: 8 RTVISGTAGGIASILAVHPLDTVRTRLQAAPAGAYRGAWHCARVTVRREGPLALYKGLAWPLAAQGLYKAVMFGVYGAASRALRGGDPARPLAAHEVFAAGGVAGGANALVLAPVELVRNRFQVAAGRTTLR 139
BLAST of mRNA_S-ischiensis_contig12.2543.1 vs. uniprot
Match: A0A7S3PMS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMS8_9STRA) HSP 1 Score: 110 bits (276), Expect = 5.850e-25 Identity = 60/125 (48.00%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 64 IIAGSVAGIASTVVCHPMDTIRTRLQTAGGGQCMGVRACFVATVRDEGLLALYKGLSFPLAAQAAYKAVIFSVNGAAQAALSEWGLEHTTGGVFACGALSGATNALVVTPVELVRNNLMLQHDDA 438
+ +GS+AG+A+ VCHP DTIRTRLQ + G CF+ R EG+ YKG + P AQA YK+VIFSVN A+ ++ + FACGA+SG N+ +VTPVELVRN LM+Q +D+
Sbjct: 8 VFSGSIAGMANQSVCHPFDTIRTRLQMKP--ELKGPIDCFIKIARFEGIFGFYKGFTAPFVAQAVYKSVIFSVNAFAKDVCEVNKIKPSPLATFACGAVSGTVNSFIVTPVELVRNQLMMQINDS 130
BLAST of mRNA_S-ischiensis_contig12.2543.1 vs. uniprot
Match: L8GM32_ACACA (Carrier superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GM32_ACACA) HSP 1 Score: 109 bits (273), Expect = 2.440e-24 Identity = 62/133 (46.62%), Postives = 80/133 (60.15%), Query Frame = 1
Query: 55 ARTIIAGSVAGIASTVVCHPMDTIRTRLQTAGGGQCMGVRACFVATVRDEGLLALYKGLSFPLAAQAAYKAVIFSVNGAAQAALSEWGLEHTTGG--------VFACGALSGATNALVVTPVELVRNNLMLQH 429
A+ + AGSVAG+ S VC+P+D +RTRLQT + GV CF TV+ EG LALYKG+S PLAAQA KA++F GAAQ + TT + CG +G+ N +V P+ELVRN LM Q+
Sbjct: 18 AKDLFAGSVAGMVSLAVCYPLDIVRTRLQTTDASRFNGVIDCFAKTVKGEGFLALYKGMSSPLAAQALQKAIMFGAYGAAQRFIVGGRDRGTTSSPQPLSTFELLLCGMFAGSVNTVVAAPIELVRNRLMTQY 150
BLAST of mRNA_S-ischiensis_contig12.2543.1 vs. uniprot
Match: K8Z7A9_NANGC (Uncharacterized protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z7A9_NANGC) HSP 1 Score: 107 bits (267), Expect = 1.170e-23 Identity = 66/141 (46.81%), Postives = 82/141 (58.16%), Query Frame = 1
Query: 52 AARTIIAGSVAGIASTVVCHPMDTIRTRLQTAGGGQCMGVRACFVATVRDEGLLALYKGLSFPLAAQAAYKAVIFSVNGAAQ---------------AALSEWGLEHTTGGVFACGALSGATNALVVTPVELVRNNLMLQH 429
A + ++AGS+A ST+VCHP+D +RT LQT + + R C R EG+ YKGLS PLAAQA YKA+IF N AQ + LS L + +F CGALSG NALVVTPVELVRN L++ H
Sbjct: 44 ARKQVLAGSIAAFVSTLVCHPIDVLRTELQTTQ--ETLTARECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPPCLSYPE--IFLCGALSGGVNALVVTPVELVRNRLVVSH 180
BLAST of mRNA_S-ischiensis_contig12.2543.1 vs. uniprot
Match: A0A5D6XJE9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJE9_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.050e-22 Identity = 63/139 (45.32%), Postives = 88/139 (63.31%), Query Frame = 1
Query: 46 DAAARTIIAGSVAGIASTVVCHPMDTIRTRLQTAGGGQCMGVRACFVATVRDEGLLALYKGLSFPLAAQAAYKAVIFSVNGAAQAALSEWGLEHTTGGVFACGALSGATNALVVTPVELVRNNLMLQHDDAHLRRLRKG 462
AAA+++IAGSVAG++S VVCHP+DT+RTRLQTA + AC T+ EG ALYKG P +QA YKAVIF+ + + + L ++ + + GA++G NAL+V PVELVRN L +Q++ R +G
Sbjct: 11 SAAAKSVIAGSVAGMSSVVVCHPLDTLRTRLQTAPARFNGSLVACARQTLEREGARALYKGFLPPFFSQAVYKAVIFTTSSKLRNDVLPASLGASSAAMVS-GAVAGGLNALLVAPVELVRNRLQVQYEHPRASRTYRG 148 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig12.2543.1 >prot_S-ischiensis_contig12.2543.1 ID=prot_S-ischiensis_contig12.2543.1|Name=mRNA_S-ischiensis_contig12.2543.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=302bp AAPAARGAAWSRGMGDAAARTIIAGSVAGIASTVVCHPMDTIRTRLQTAGback to top mRNA from alignment at S-ischiensis_contig12:475284..480297+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig12.2543.1 ID=mRNA_S-ischiensis_contig12.2543.1|Name=mRNA_S-ischiensis_contig12.2543.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5014bp|location=Sequence derived from alignment at S-ischiensis_contig12:475284..480297+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig12:475284..480297+ >mRNA_S-ischiensis_contig12.2543.1 ID=mRNA_S-ischiensis_contig12.2543.1|Name=mRNA_S-ischiensis_contig12.2543.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1812bp|location=Sequence derived from alignment at S-ischiensis_contig12:475284..480297+ (Schizocladia ischiensis KU_0333)back to top |