mRNA_S-ischiensis_contig12.2519.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2519.1
Unique NamemRNA_S-ischiensis_contig12.2519.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig12.2519.1 vs. uniprot
Match: A0A6H5K4L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4L5_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.060e-27
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    4 NAMRRRNLAVGAGAVAFAGFMAMVPYLARKQATKSLYDSEEALTGSQVQRGAFMNSGSRDVGRDQDWDKHTREWKGK 234
            +++R+RNLAVG     F+  MA +P++ RK+ TKSLYDSEE LTGSQ+QRGAFMNSGS+DVGRD DW K TREW G+
Sbjct:    6 SSVRQRNLAVGVAICGFSAAMASLPFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDHDWSKETREWAGR 82
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BLAST of mRNA_S-ischiensis_contig12.2519.1 vs. uniprot
Match: A0A2R5GU17_9STRA (Protein N-lysine methyltransferase METTL21A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU17_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.300e-12
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:   16 RRNLAVGAGAVAFAGFMAMVP--YLAR-KQATKSLYDSEEALTGSQVQRGAFMNSGSRDVGRDQDWDKHTREWKGKYREH 246
            RRNLA  AG V F G  A VP  Y  + KQA  +L   E ALTG+QV RGA++N+GSRD G D DWD   R W+G+  +H
Sbjct:    4 RRNLATAAGLVGFIGLCASVPMWYSNKLKQAQVNLQQQENALTGNQVIRGAYLNTGSRDAGVDPDWDFERRVWRGRRAQH 83
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BLAST of mRNA_S-ischiensis_contig12.2519.1 vs. uniprot
Match: F0WCJ2_9STRA (Uncharacterized protein AlNc14C59G4372 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCJ2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.140e-10
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:   16 RRNLAVGAGAVAFAGFMAMVPYLARKQATKSLYDSEEALTGSQVQRGAFMNSGSRDVGRDQDWDKHTREWKG 231
            R ++ V   A+  AG    VPYL+    T++   +E+AL+ SQV+RGA++N+GS+D+G D D+D  TR W G
Sbjct:    8 RGDVVVAVLALITAGAFFSVPYLSHYLKTENYQTTEKALSSSQVRRGAYLNTGSKDIGPDPDYDAKTRTWNG 79
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BLAST of mRNA_S-ischiensis_contig12.2519.1 vs. uniprot
Match: A0A5A8E2E3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2E3_CAFRO)

HSP 1 Score: 60.5 bits (145), Expect = 7.640e-10
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   40 GAVAFAGFMAMVPYLARKQATKSLYDSEEALTGSQVQRGAFMNSGSRDVGRDQDWDKHTREWK 228
            GA+  AG  A +P+L  K   + L D E +LTG+Q+QRGAF+NSGS+DVG D DWD  T  +K
Sbjct:   17 GALLVAGGFASIPFLFTKSQVR-LTDKEGSLTGTQIQRGAFLNSGSKDVGVDPDWDLKTGTYK 78
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BLAST of mRNA_S-ischiensis_contig12.2519.1 vs. uniprot
Match: A0A482RF47_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RF47_9ARCH)

HSP 1 Score: 58.5 bits (140), Expect = 6.550e-9
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   13 RRRNLAVGAGAVAFAGFMAMVPYLARKQATKSLYDSEEALTGSQVQRGAFMNSGSRDVGRDQDWDKHTREWKG 231
            RR  L V AG+ A A F     YL  +    +L  S++ LTGSQ+ RGA+MN+GS+DVGRD DWD  T  + G
Sbjct:   25 RRAGLFVMAGSFALAPF-----YLRYRNQGNNLTLSDKPLTGSQIMRGAYMNTGSKDVGRDPDWDAATGRYMG 92
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BLAST of mRNA_S-ischiensis_contig12.2519.1 vs. uniprot
Match: W7UAH4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAH4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.800e-9
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   67 AMVPYLARK-QATKSLYDSEEALTGSQVQRGAFMNSGSRDVGRDQDWDKHTREWKGK 234
            A++PY  RK +  +SLY S++ LTGSQ+ RGA+MNS S+D+G D D+D  + EW G+
Sbjct:   41 ALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGR 97
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BLAST of mRNA_S-ischiensis_contig12.2519.1 vs. uniprot
Match: A0A7S1XNK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNK1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.210e-9
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   64 MAMVPYLARKQATKSLYDSEEALTGSQVQRGAFMNSGSRDVGRDQDW 204
            MA VP+L+ K  T++L + ++ALTG+QVQRG FMNSGS+DVGRD +W
Sbjct:   61 MAAVPFLSMKT-TENLMNRDKALTGTQVQRGPFMNSGSKDVGRDPNW 106
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BLAST of mRNA_S-ischiensis_contig12.2519.1 vs. uniprot
Match: K3XCC5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCC5_GLOUD)

HSP 1 Score: 55.8 bits (133), Expect = 4.060e-8
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   73 VPYLARKQATKSLYDSEEALTGSQVQRGAFMNSGSRDVGRDQDWDKHTREWKGK 234
            +P+LA    T++L   E+AL  SQ++RG ++N+GS+D G D DWD  T  W+G+
Sbjct:   35 IPFLAHFTKTENLTRKEDALNASQIRRGVYLNTGSKDAGVDPDWDFRTNTWRGR 88
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BLAST of mRNA_S-ischiensis_contig12.2519.1 vs. uniprot
Match: A0A448Z4V5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4V5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.790e-8
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   40 GAVAFAGFMAMVPYLARKQATKSLYDSEEALTGSQVQRGAFMNSGSRDVGRDQDWDKHT 216
            G V F G  A +PY A K+   +L D ++ LT +QV+RGAF NSGSRD G+D +WD  T
Sbjct:   63 GCVGFVGAAATLPYFATKK-IGNLTDRDDPLTAAQVRRGAFNNSGSRDAGKDHNWDLKT 120
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BLAST of mRNA_S-ischiensis_contig12.2519.1 vs. uniprot
Match: A0A8J5XI83_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XI83_DIALT)

HSP 1 Score: 54.7 bits (130), Expect = 8.080e-8
Identity = 28/76 (36.84%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:   16 RRNLAVGAGAVAFAGFMAMVPYLA---RKQATKSLYDSEEALTGSQVQRGAFMNSGSRDVGRDQDWDKHTREWKGK 234
            R N  V  G   F G  +M+P+     +++   +LY  ++ L+G+Q+ RG ++N+GS+DVG D DWD  T  +KG+
Sbjct:    9 RSNSRVVGGLALFLGVSSMLPFYLHDRQRRLAGNLYSRDKPLSGNQIMRGPYINTGSKDVGPDPDWDHSTGRYKGR 84
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4L5_9PHAE1.060e-2764.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5GU17_9STRA1.300e-1252.50Protein N-lysine methyltransferase METTL21A n=1 Ta... [more]
F0WCJ2_9STRA7.140e-1043.06Uncharacterized protein AlNc14C59G4372 n=1 Tax=Alb... [more]
A0A5A8E2E3_CAFRO7.640e-1052.38Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A482RF47_9ARCH6.550e-947.95Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W7UAH4_9STRA7.800e-950.88Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1XNK1_9STRA8.210e-961.70Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
K3XCC5_GLOUD4.060e-844.44Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A448Z4V5_9STRA4.790e-850.85Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A8J5XI83_DIALT8.080e-836.84Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:114046..115067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue5.2e-08
Seed eggNOG ortholog653948.CCA18909
EggNOG OGs2E2XB@1,2SA3B@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_001530.1
Exons2
Model size249
Cds size249
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.5864003-CDS-S-ischiensis_contig12:114045..1141651622815640.5864003-CDS-S-ischiensis_contig12:114045..114165Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 114046..114165 -
1695739820.7969172-CDS-S-ischiensis_contig12:114045..1141651695739820.7969172-CDS-S-ischiensis_contig12:114045..114165Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 114046..114165 -
1622815640.602442-CDS-S-ischiensis_contig12:114938..1150671622815640.602442-CDS-S-ischiensis_contig12:114938..115067Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 114939..115067 -
1695739820.8088286-CDS-S-ischiensis_contig12:114938..1150671695739820.8088286-CDS-S-ischiensis_contig12:114938..115067Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 114939..115067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2519.1prot_S-ischiensis_contig12.2519.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 114046..115067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2519.1

>prot_S-ischiensis_contig12.2519.1 ID=prot_S-ischiensis_contig12.2519.1|Name=mRNA_S-ischiensis_contig12.2519.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=83bp
MNAMRRRNLAVGAGAVAFAGFMAMVPYLARKQATKSLYDSEEALTGSQVQ
RGAFMNSGSRDVGRDQDWDKHTREWKGKYREH*
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mRNA from alignment at S-ischiensis_contig12:114046..115067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2519.1 ID=mRNA_S-ischiensis_contig12.2519.1|Name=mRNA_S-ischiensis_contig12.2519.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1022bp|location=Sequence derived from alignment at S-ischiensis_contig12:114046..115067- (Schizocladia ischiensis KU_0333)
ATGAATGCGATGCGCCGGCGGAACCTTGCCGTCGGGGCCGGGGCCGTGGC
TTTCGCCGGGTTCATGGCCATGGTGCCGTACCTGGCGCGTAAGCAGGCCA
CCAAGTCGCTCTACGACTCGGAGGAGGCGGTGAGCCACGTCCCGATTGTC
TTCTCCTGTCAGGGCCAGCTTGGAGCGTGCAGAAAGTTAACGAGCGGTCG
GGTAGGGCACGTTAGACGTGCCTGCGCAGGCCCTGTGGTGACAGGATCCT
CCTTCTGCCTTTCGTTCCAGTGGATGCTTCCTGAAGACTCCCCTGGTCTC
TGCCCGATCATCAGCGATCCTCCAAGCAGGGTGATCCTGGACAGCCATGG
ATCGGAGCCCCCCTCGCATTGCGCACTGGGCAACCATTGGAACCCCACAT
TACATGACAGTGCTTCCAAGTACAGGTCGGCACTCCATTCAAGGCAGTAG
TTGTTGTCAGGTCGAATATTGCCCCCCTGCAACCCGTGCTCTTCTGGCCC
ACCGTCCAGCAGTGATGGAATATCTAAGCAAATCAACCTGTTTATCAATA
GTACTGATCTTTTTTTAGAGGTAGATAAGCGGCGAGTTCCAGGCCCCGTG
CCAAAAGGCTCGTCCCGAAACGGGACTCAACGAAGCCCTTCCTTTGCTCG
CAGGGCAAAAAGAAAACAAAAATGAAGTATATATATATCTATCGATAGTC
CATATTCGATAGTTTGACCCACACTAAATCCAAGCAGTTCTTGGCATGAA
GATAAAAAGCGAGTGGGAAAGAGAGGTGTCCCTGCTTACGCGAGTTCAGG
GCCCCCCCATCCCAGAAGCCCGTCTAGTTAGTAGCGCCACCCACCAAATC
AGTCGAACCCAATAACTATCTACTGATCTGATATTCCATCACTGCCGTCC
AGCTCACAGGCTCCCAGGTCCAGCGGGGGGCCTTCATGAACAGCGGCTCC
AGGGACGTCGGCCGGGACCAGGACTGGGACAAGCACACCCGGGAGTGGAA
GGGAAAGTACCGAGAACACTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:114046..115067-

>mRNA_S-ischiensis_contig12.2519.1 ID=mRNA_S-ischiensis_contig12.2519.1|Name=mRNA_S-ischiensis_contig12.2519.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=498bp|location=Sequence derived from alignment at S-ischiensis_contig12:114046..115067- (Schizocladia ischiensis KU_0333)
ATGAATGCGATGCGCCGGCGGAACCTTGCCGTCGGGGCCGGGGCCGTGGC
TTTCGCCGGGTTCATGGCCATGGTGCCGTACCTGGCGCGTAAGCAGGCCA
CCAAGTCGCTCTACGACTCGGAGGAGGCGATGAATGCGATGCGCCGGCGG
AACCTTGCCGTCGGGGCCGGGGCCGTGGCTTTCGCCGGGTTCATGGCCAT
GGTGCCGTACCTGGCGCGTAAGCAGGCCACCAAGTCGCTCTACGACTCGG
AGGAGGCGCTCACAGGCTCCCAGGTCCAGCGGGGGGCCTTCATGAACAGC
GGCTCCAGGGACGTCGGCCGGGACCAGGACTGGGACAAGCACACCCGGGA
GTGGAAGGGAAAGTACCGAGAACACTGACTCACAGGCTCCCAGGTCCAGC
GGGGGGCCTTCATGAACAGCGGCTCCAGGGACGTCGGCCGGGACCAGGAC
TGGGACAAGCACACCCGGGAGTGGAAGGGAAAGTACCGAGAACACTGA
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