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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 726 |
| Cds size | 711 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815631.4764738-UTR-S-ischiensis_contig12:69313..69327 | 1622815631.4764738-UTR-S-ischiensis_contig12:69313..69327 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 69314..69327 + |
| 1695739815.9080846-UTR-S-ischiensis_contig12:69313..69327 | 1695739815.9080846-UTR-S-ischiensis_contig12:69313..69327 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 69314..69327 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815631.491234-CDS-S-ischiensis_contig12:69327..69501 | 1622815631.491234-CDS-S-ischiensis_contig12:69327..69501 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 69328..69501 + |
| 1695739815.9194548-CDS-S-ischiensis_contig12:69327..69501 | 1695739815.9194548-CDS-S-ischiensis_contig12:69327..69501 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 69328..69501 + |
| 1622815631.5079165-CDS-S-ischiensis_contig12:70549..70732 | 1622815631.5079165-CDS-S-ischiensis_contig12:70549..70732 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 70550..70732 + |
| 1695739815.9328678-CDS-S-ischiensis_contig12:70549..70732 | 1695739815.9328678-CDS-S-ischiensis_contig12:70549..70732 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 70550..70732 + |
| 1622815631.5218446-CDS-S-ischiensis_contig12:71220..71286 | 1622815631.5218446-CDS-S-ischiensis_contig12:71220..71286 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 71221..71286 + |
| 1695739815.942732-CDS-S-ischiensis_contig12:71220..71286 | 1695739815.942732-CDS-S-ischiensis_contig12:71220..71286 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 71221..71286 + |
| 1622815631.5343761-CDS-S-ischiensis_contig12:72443..72731 | 1622815631.5343761-CDS-S-ischiensis_contig12:72443..72731 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 72444..72731 + |
| 1695739815.951605-CDS-S-ischiensis_contig12:72443..72731 | 1695739815.951605-CDS-S-ischiensis_contig12:72443..72731 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 72444..72731 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig12.2514.1 >prot_S-ischiensis_contig12.2514.1 ID=prot_S-ischiensis_contig12.2514.1|Name=mRNA_S-ischiensis_contig12.2514.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=237bp
MRATEEAERSVARERTRRGEAGRARETRESTARVAGKRDALLRRAREEEE
LRVRRRMQDDLERAALRLGMSWPVVEEAQSGMEKAMAAVANARAALKPTG
NEGNGDGAGGPSVPSARVAVSEALRKVGELEAAAAALEEQQVLGSAPLYG
GTTTALAPDALHDTVLLYPAQRATTPPTAPFATPPANPSVSYSGPGPDLP
LPQGGVGGWDLRGEGPSGGSGGSGSYYGLGGVGGGGG back to topmRNA from alignment at S-ischiensis_contig12:69314..72731+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig12.2514.1 ID=mRNA_S-ischiensis_contig12.2514.1|Name=mRNA_S-ischiensis_contig12.2514.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3418bp|location=Sequence derived from alignment at S-ischiensis_contig12:69314..72731+ (Schizocladia ischiensis KU_0333)
AGGTGCGAGAGGCGATGCGTGCAACGGAGGAGGCCGAGCGCTCCGTTGCC
CGGGAGCGCACGCGGCGGGGCGAGGCGGGGAGGGCGCGCGAGACCCGCGA
GTCCACGGCCAGGGTGGCGGGCAAGCGGGACGCCTTGCTCAGGCGGGCCA
GGGAGGAGGAGGAGCTGCGCGTGCGCCGCCGCATGCAGGTGATTCACATA
AATTGTAACGAGGTACTTCGAAGTACTCGGGTACAATCGCACGTGTTTGA
GATTTATGTTCTCGACTAGCGGTTATCCCATTTAAGAACCCGCATGCAGG
CGTGTGTGTGTGGCACGTGTGTGTGTGTGTGGCATGTGTGTGTGTGTGTG
TGTGTGTGTGTTCCAGGCACTAGAAAAAGGGGTTCTCGATCGAAAACGAA
GTCGGCCCGGGACCACCCTCCCTGTCGACGGTGAATGAACACCGGAGGAC
CCAAGGACCTGAGAAAATGTAGGCGACGGAGTCGAGCGACGCCGCCGTTA
CAGTACGCAAACTGTAATGTCTGCAATTCCTGTGTAGCGCATGGGTCTAC
TTGTGTGTTGTCGGTGCTTGGTTGTGCTGTGCGCATCATAAGCTGTCCAG
CCAGCTGTTGCTTTGGGAGGAGGAAGGGCTGTGCTCGTGCATGGCGCCGT
GTGCAGGTGTGTGTGTGTGTAGTGTGTGCTATGTGACGTGCACTCTGAAC
CCTGCTGTTGTTAGTTTGGCGTCATGGACATGGTGCAGTTTGGCATCATG
ACACGTGAAGTGATAGTAGTACTATTGCAGCACTCCACAGACTACAGTAC
AGATCTACGAGTATATATATGTGCTCACGTTGTGCTTGCCGTAGTCCCGA
GACCATCGACCATGCGCCTCGGTCGAGACAGAGCAGTACTCTACATGATC
TTAACACAGTGTACGGTCTTGGCATGACATGACATCATTATATCACATCA
CGCCCCTCCCAGGACGACCTCCAGTGATACTACAGTGCTCGAGTACTCCA
CGTACTACAGTACTCTACATGCTCTTGACAGTCGTTTGACAGGACATCAC
ATCACACCATATCACATCACATCACATCAAATCATTGTAAGCACTCTGAA
CATCAGTACCTAGCATCGCATGACATGACATGATATCACATCACGCCCCC
AACCACTACTTAATACGAGAACGCTCAGTCTCACACACGTGCGGTTGTAC
CTCGCTACAATTTATGTGAATCACAACCCCTGCCAGGACGACCTGGAGCG
CGCGGCCCTGCGCCTGGGCATGAGCTGGCCTGTGGTGGAGGAGGCGCAGT
CGGGCATGGAAAAAGCCATGGCCGCGGTGGCCAATGCCCGTGCCGCCCTC
AAGCCCACTGGCAATGAAGGCAACGGGGATGGGGCGGGCGGCCCCTCCGT
GCCGTCGGCGCGCGTGGCGGTGAGTGTGGCCATGGGGTGGATAGATTTGG
GTGGTGATGAATATCAATTGTAACGAGGTATACAATCGCACATGTGTGAG
ATTGAGTGTTCTCGTATTCGTGGCTATCCATAGATACGGGTGAGTTCAGC
GGTCTGAACTACTGTTCCCTCCGTGCCATCGGCGGGCGTGGCAGTGTGTG
TGTTAGGATAGATTCGGGCGCGTTCAGCGGTCTGAAATACTATTCTCCTC
CCCTTCCCCACACAAACTTCCCCTGGCGAGCTATAAGAAAGGGCCACTGT
TGAGGTCTCTAGTGACGTGGCCTGCACCTCGCCCAGTGTTATTCCTGTTC
ATACGAGTACTTGGAAGATGTGCTTCCAGACGAACTGCATCTTTTTCCAC
GTGGCATTATCTGCGAGGCTGGCAACACAAAGATGATCACCATCAGGAGT
AAATTCGCTTTTGAGCCCCATTCTGTTTGACGATGCCTGTGATACTTGCA
CTTGTAGGTGAGCGAGGCACTGAGGAAGGTCGGGGAGCTGGAAGCGGCAG
CCGCAGCTCTCGAGGAGCAGCAGGTCAGTGGATCAGGTCATGTTGCACGG
TTTTGGACAAAGCAACACTCCTTCAAGGTGTGCTTGGAAGCGCCAACTGA
GTTACATACTGTACTGTACCGAGTAGTGGCATGCGCAGGACGGGGTGTCC
CCTGTCCAACGCACGTACTCGTACCTAGTACGGAAGTAGTATACTGCTTT
GTACACTAGTACGTGGCATGCACAGGACGGGGTGATCACAACCCTGTCCA
AGGTGAGTACTCGAGTACACTGTACTCCACACTGCAGTAGGCATGCATGT
ACTGTGGCGTTGTGTGTGTGTACGCACGTTGAACGGGGTGTGCACGCACA
CTGCACTGCACACTGCACTAGACAGTCATGCACCTGGTGTTGTGCGTGTG
TGTACTCATGTTGAGAGGGTTGTGATCATCCCGTGGCCTTTGCCAACCAG
TACACTACAGTGTACTTGCTGGACCGCCGTGGTGTTGCGGACACTTTATT
TCCAAATGCTCCGTATCCAAAGCACACGGTAGGTGCTGTACGAGTACCAA
CAGCAACAGTGCTGCACTAAATTGTACGCGTACCCACACACAGTAGTACT
TGTACATACAGTAGTACAGCACTCAACTGCACTGCTGTAAGTACCTCCAT
GTCTGCCAAAGTGCTGCACTAGTTAATATTGCTGCATGTACTTTTGCTGC
AAAGTCCTTGATATGCTCAACTAACGTACCCCCGTACAGGCACAGTACGT
GAGTAGCTCTGTTTCGTGCCGCTGCAACGGCACGGCTATTTTTTTTTTAT
TTCCCGACATGCCCAACTGCGTGGGTGTATTTCATTGCGTGCCGATGTAT
GGTACTGTGTAGTACTTCAAAGTACTTCGAAGTAATCTTTTTTGTTCTGG
CGGGCAAAGCGAGTCCGCCCCCTCTCACCAAGAACATTAAATTCTTAAAT
GGGACAACTACTACATAGTAGAAGAACACTCAATCTCACACACATGCGTG
TACCTAGTTACAATTTATATTAGTCACCCCTCTCACCAAACATCTCACGT
TTTAGCCCTTTTGCCCCTGCTAGCTTGGACTTACACACTAAAACCCTATG
ATTATACGGACACGAGGCGCAAAAAATGTAAACCCATTTGTTCTCTTCGT
CGCCTCCCCCTTGCCCCTCTCTTTCCGCAGGTCCTTGGCAGTGCCCCTCT
CTACGGCGGCACCACCACCGCCCTTGCCCCAGACGCCCTCCATGACACCG
TCCTCTTGTACCCCGCCCAGAGGGCCACCACCCCCCCCACTGCCCCCTTC
GCCACCCCTCCTGCAAACCCCTCTGTTTCCTATTCCGGCCCCGGGCCTGA
CCTCCCTCTCCCTCAGGGAGGGGTGGGGGGCTGGGACCTTCGGGGTGAGG
GACCTAGCGGTGGCAGTGGCGGTTCTGGGAGTTACTACGGCTTGGGTGGC
GTCGGCGGCGGTGGTGGT back to topCoding sequence (CDS) from alignment at S-ischiensis_contig12:69314..72731+ >mRNA_S-ischiensis_contig12.2514.1 ID=mRNA_S-ischiensis_contig12.2514.1|Name=mRNA_S-ischiensis_contig12.2514.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1422bp|location=Sequence derived from alignment at S-ischiensis_contig12:69314..72731+ (Schizocladia ischiensis KU_0333)
ATGCGTGCAACGGAGGAGGCCGAGCGCTCCGTTGCCCGGGAGCGCACGCG
GCGGGGCGAGGCGGGGAGGGCGCGCGAGACCCGCGAGTCCACGGCCAGGG
TGGCGGGCAAGCGGGACGCCTTGCTCAGGCGGGCCAGGGAGGAGGAGGAG
CTGCGCGTGCGCCGCCGCATGCAGATGCGTGCAACGGAGGAGGCCGAGCG
CTCCGTTGCCCGGGAGCGCACGCGGCGGGGCGAGGCGGGGAGGGCGCGCG
AGACCCGCGAGTCCACGGCCAGGGTGGCGGGCAAGCGGGACGCCTTGCTC
AGGCGGGCCAGGGAGGAGGAGGAGCTGCGCGTGCGCCGCCGCATGCAGGA
CGACCTGGAGCGCGCGGCCCTGCGCCTGGGCATGAGCTGGCCTGTGGTGG
AGGAGGCGCAGTCGGGCATGGAAAAAGCCATGGCCGCGGTGGCCAATGCC
CGTGCCGCCCTCAAGCCCACTGGCAATGAAGGCAACGGGGATGGGGCGGG
CGGCCCCTCCGTGCCGTCGGCGCGCGTGGCGGACGACCTGGAGCGCGCGG
CCCTGCGCCTGGGCATGAGCTGGCCTGTGGTGGAGGAGGCGCAGTCGGGC
ATGGAAAAAGCCATGGCCGCGGTGGCCAATGCCCGTGCCGCCCTCAAGCC
CACTGGCAATGAAGGCAACGGGGATGGGGCGGGCGGCCCCTCCGTGCCGT
CGGCGCGCGTGGCGGTGAGCGAGGCACTGAGGAAGGTCGGGGAGCTGGAA
GCGGCAGCCGCAGCTCTCGAGGAGCAGCAGGTGAGCGAGGCACTGAGGAA
GGTCGGGGAGCTGGAAGCGGCAGCCGCAGCTCTCGAGGAGCAGCAGGTCC
TTGGCAGTGCCCCTCTCTACGGCGGCACCACCACCGCCCTTGCCCCAGAC
GCCCTCCATGACACCGTCCTCTTGTACCCCGCCCAGAGGGCCACCACCCC
CCCCACTGCCCCCTTCGCCACCCCTCCTGCAAACCCCTCTGTTTCCTATT
CCGGCCCCGGGCCTGACCTCCCTCTCCCTCAGGGAGGGGTGGGGGGCTGG
GACCTTCGGGGTGAGGGACCTAGCGGTGGCAGTGGCGGTTCTGGGAGTTA
CTACGGCTTGGGTGGCGTCGGCGGCGGTGGTGGTGTCCTTGGCAGTGCCC
CTCTCTACGGCGGCACCACCACCGCCCTTGCCCCAGACGCCCTCCATGAC
ACCGTCCTCTTGTACCCCGCCCAGAGGGCCACCACCCCCCCCACTGCCCC
CTTCGCCACCCCTCCTGCAAACCCCTCTGTTTCCTATTCCGGCCCCGGGC
CTGACCTCCCTCTCCCTCAGGGAGGGGTGGGGGGCTGGGACCTTCGGGGT
GAGGGACCTAGCGGTGGCAGTGGCGGTTCTGGGAGTTACTACGGCTTGGG
TGGCGTCGGCGGCGGTGGTGGT back to top
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