mRNA_S-ischiensis_contig12.2513.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2513.1
Unique NamemRNA_S-ischiensis_contig12.2513.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:61152..67864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size651
Cds size648
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2513.1prot_S-ischiensis_contig12.2513.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 61152..67863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.3753982-CDS-S-ischiensis_contig12:61151..612561622815631.3753982-CDS-S-ischiensis_contig12:61151..61256Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 61152..61256 +
1695739815.8376331-CDS-S-ischiensis_contig12:61151..612561695739815.8376331-CDS-S-ischiensis_contig12:61151..61256Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 61152..61256 +
1622815631.3855703-CDS-S-ischiensis_contig12:62137..622301622815631.3855703-CDS-S-ischiensis_contig12:62137..62230Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 62138..62230 +
1695739815.8570106-CDS-S-ischiensis_contig12:62137..622301695739815.8570106-CDS-S-ischiensis_contig12:62137..62230Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 62138..62230 +
1622815631.39644-CDS-S-ischiensis_contig12:63467..636321622815631.39644-CDS-S-ischiensis_contig12:63467..63632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 63468..63632 +
1695739815.868991-CDS-S-ischiensis_contig12:63467..636321695739815.868991-CDS-S-ischiensis_contig12:63467..63632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 63468..63632 +
1622815631.4131634-CDS-S-ischiensis_contig12:65077..652241622815631.4131634-CDS-S-ischiensis_contig12:65077..65224Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 65078..65224 +
1695739815.879079-CDS-S-ischiensis_contig12:65077..652241695739815.879079-CDS-S-ischiensis_contig12:65077..65224Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 65078..65224 +
1622815631.4265652-CDS-S-ischiensis_contig12:66553..665981622815631.4265652-CDS-S-ischiensis_contig12:66553..66598Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 66554..66598 +
1695739815.890663-CDS-S-ischiensis_contig12:66553..665981695739815.890663-CDS-S-ischiensis_contig12:66553..66598Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 66554..66598 +
1622815631.4395893-CDS-S-ischiensis_contig12:67770..678631622815631.4395893-CDS-S-ischiensis_contig12:67770..67863Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 67771..67863 +
1695739815.899267-CDS-S-ischiensis_contig12:67770..678631695739815.899267-CDS-S-ischiensis_contig12:67770..67863Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 67771..67863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2513.1

>prot_S-ischiensis_contig12.2513.1 ID=prot_S-ischiensis_contig12.2513.1|Name=mRNA_S-ischiensis_contig12.2513.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=216bp
GVGGGNGELRPSTGVAALTGAMSAAEQALAVAKKKAGVSMEEWLESSAGG
DGVGGGGAKGTSASSQAVEEAVRRVAEADAILSKENSRMEKEDKGRAAAR
ARLMGHSDRLAAVDAQAEASQVSGVERVQEAMRAAERAIEVVARLLSGGG
AVAASAAAMEVVSSRVADAQELVSAESRRRERGEQERRRARLQLEGCAQR
AAAARAAARELSATIA
back to top

mRNA from alignment at S-ischiensis_contig12:61152..67864+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2513.1 ID=mRNA_S-ischiensis_contig12.2513.1|Name=mRNA_S-ischiensis_contig12.2513.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6713bp|location=Sequence derived from alignment at S-ischiensis_contig12:61152..67864+ (Schizocladia ischiensis KU_0333)
GGCGTGGGCGGGGGGAACGGGGAGCTGCGGCCATCTACGGGGGTAGCGGC
GCTGACCGGGGCAATGTCCGCGGCAGAGCAGGCTCTGGCGGTGGCGAAGA
AGAAGGTGCAAGTGACCGGCGTTGCGTGGCTGCCGTGCGTTCATTGGTGT
GGGCGCTGTGCTCTGCCTCTTCCGCGAAGCATGAGTCAAGGGTGTTTGTT
GCTTCTACTTGCAGTATATTTTTAGCTGTTGTATGAGTGAGTATCGTCCT
ATTGGATATTCGTCTTGCGACATGTACTGTACTGTACATCGTCTTGCGTG
CGTACAGGATGTATTCGACGGCCCAAGGAGTTAAAAGTGACGGTATGACT
CAGGTTTGCCCTCCAACAGCTGCAGTTTTTTCGCTTGTACAAGTACAAGA
CTCTCGCATCCCAGCAACGCGGGATGGAGTGTGGCATTAGATAGTACAAA
TGAGATTACTACTGTAGTGCATTGGAGAGTACAAACGGGATTACTACCGT
AGTGCATTAGAGAGTACAAATGAGATTGCTACTGTACTAGGTAGACAATT
AGAGGTTACAAATGAGATTGTTACTGCAGTACGCGTAGTACATTCGAGAG
TACCAGTGAGATTGCTACTGCAGTACGCGTCCTGTACTGCGGACAAACAG
GACACGGGGTGACCTGTCCGACACGACTACTACAGTAGTACATGTATGTA
CTCGTATGCCTAAACCTACCCTAACTGCTGTCTCGACCGAGGCGCGTGGT
CAATGGTCTCGGGACTACGGAATGCAGCATGTGAGTACATATATACACTG
TTACAGTAGATACAGGCGCGTGTTTTGCAGGCGTGTACACTCTCACCCAC
CCACTCACCCACTCACTCACTCACTCACTCACTCACTCTCTCTCTCTCAC
ACACACACACACGGAACATGAGACAAGACACGCGTGTGCCTCCCACCCTT
TCCCTCCCCTCGCCGTCCCTCCGCATGTCCCTGCAGGCCGGTGTGAGCAT
GGAGGAGTGGCTGGAGTCATCGGCTGGGGGCGATGGTGTCGGCGGGGGCG
GGGCTAAGGGCACGTCTGCCAGCTCCCAGGTACACCGGTGTGCAGCGATC
AGTAGATAGTTATCGGGCTCGACTGATTTTGTGGGTGGCAATACTAACTA
CTTGGATTTAGTGTGGGTCAAACTATCGAGTATTGACTATCGATAGATAT
ATAGATCACCACTGTCGATAGTAGGTTGATTTGCTTAGATGTTACATCAC
TGCCGGTGTGGGTGCAGTGGTCACGATGTGATGTGATATGACTGATGTCA
AACGATTAGAGTGCCATATACTGTAGTGCAGTACGTTAGACTGCACATCA
CATCAGTTCGCGTCGCAGCGCAGAGAGATGGTGTTTCTTCAGCCCTTCGA
GGGTGGTGCGACATGCATCTCATCCCTTCTAGTCTCCTAGGGTTTATGTT
GTACAGTAGTTGACTACTGTACTATCCAAGGACGTGTGTACTCCGGCTGT
GCTTGCCGTAGCCCTTACAGTAGACAAATGACCTTCCAACCTCGCACGAG
GGCTCGTATTGTGCTTGCCGTAGCCCCCAGGCATGGCCCATTCATGCGAG
AAAAAGAGAGAAGAAAGGTTTTGCTGTGCCGCGCTTGTTTTCGGTACTGT
ACTATATTGTGCAATTATGCACTTGCTCCGTCTCGATCGAGGCACATGGT
CAATGGTCCCGGGGCTATGGCAAGCACAACATGAGTGCACATATGCTTCG
AAGTATATATACGCCAACCGCGGCGTGGTGTCTGTGTCTGCCCCCAGGCG
GTACAATCGCACGTGTCTGAGATTGAGTGTTCTCGTATTACAGTAGTGGT
TATCCCATTCAAGAAAATGGGTTGTTTTGTGTACTGTACTGTACTGTACT
GTATGTTTGTAACTGCTTGTGTCTGCTCCCAGGCGGTGGAAGAGGCGGTG
CGGCGGGTGGCCGAGGCGGACGTCATCCTGTCCAAGGAGAACTCCTATGC
TGAAAGCGACCGTACAATTGTACAGCTTTGTGCGAGAATTCTGTGTAACG
GCAGTGACTGCTTGTTTCGGTATTGTACTTCGAAGTACAGTTGTACACCA
ACCACGTACGTGCTCTCTGTGTGTGCTCCACAGGCAGTGGAAGATGCGGT
GCGGCGGGTGGCCGAGGCAGACGCCATCGTGTCCAAGGAGAACTCCTCAG
CTGAAAGTGACCTTACAATTGTACAGCTTTGTGCGAAAAATTCTGTGTAA
TGGCAGTGACTGCTTGTTTCTGTATTGTACTGTACAACTGTACCTCTTTT
TTGTGTCTGCTCCCAGGCGGTGGAAGAGGCAGTGCGGCGGGTGGCCGAAG
CAGACGCCATCCTGTCCAAGGAGAACTCCCGCATGGAGAAGGAGGACAAG
GGCCGGGCGGCGGCGCGGGCGCGGCTCATGGGGCACTCGGATAGGCTGGC
CGCCGTGGACGCGCAGGCGGAAGCCTCCCAGGTACGTACAAGTATGTCAA
CAGGTACTTTACCGGCCAAGGCACTTATCGAATAATATCTCGGGTGGGGG
TACGAACCAGACCTCAAGCGATAGCGCGATCGAAAGCTCTGGTCGAGTGC
TTTCGATCGGTGCAGTAAAAACCACCGGGTTTTGAGTTGTTATCGAGAAA
TACTTGTCAGAAGGCTCCCCGGCCGGGGGGGCAGAAATTGCTGATTTTGC
TTTGAGGGACAATATGTCGACAACCAGGCAAAACCTGAAGCGTCTCATTG
GCCCAATATGGAGCTGTCGACCCGAGCTTTCCATCGCGCCATTTGGCGAG
GTCTGATTCGTACCCCCTCCCGAGATGTACTTTCAATAAACCGACCTACT
CTTCGGGTGGGTCATTTCATTGGCTAAATGAGGCGAGAGAGTGTACGCGC
ACTTGCGACTGAACGACGACGAATTGGAGTAAATCGAAACCACCGTGTGA
TTCCTCTCGATGAGACGAGTCGATTGCGCTCTTTTAAAAAAAAAACTCCC
GAAAATTTTATACTACTTGGTTTTAGTATTGAAAATTTGCCGTCAACGGC
CAGTCCAGGCCCGGCCGATATCTGGCCACATGATGCCCGAATCGAAAACT
GTTGCAAAGCAATATGGCAGGTCACGGCCGTGCTATTAAAACGAGCGCGC
CGCGCAATTCGCTTTTGTTCGAAAGTTATCGCCCGACAAAAGCCCATCCC
GGAAGTGATAGGTTCCACCTTAGTTACACCCAGCAAGTACCACATACTTC
GAAGTACAAGTAGAGGTATGTCAACAGGCAAATGCTACAGTAGCTACAGA
CAGCAAGTGCCACGTACAAGCAAAGGTATGCCATCAGGTATTAGTTACAG
TAGCTACAGACGGCAAGTACCACGTGCAAGTAAAACACTCGCTCACTTAA
GCCTCCCAGGTATGTCAACAGATGTTGTTAGTTACACACAGCAAGTACAA
TGTACGAATAAAATGCTTGCTTGCTTCCCTTGCACATCTACCGTGTCAAC
AGACAGGCTGTTTAAAATATATAAGAAGTACTCGTATATATGGTATCATA
CACTTCAAAGTATATATATTTTGGCGGGAAATGCCGACGAGATAGTAGGT
ACTGCTTTCAAGCGCTTCCCAGTAAAGGCCATATTTGCCTGTGTAGAGCA
AGTCTGCAACACAGAGACCAAGACTTTGGGAGAATGTTTCTCGCTAGCGA
TGTACGAAGTATGTACCGCTCGGTCCCCCGCCCCGGAAAAGCTTGGGAAA
TTTACTCGTGGCCGAGAAGGAATGAATGGCCCCGATTTGGTTTTTTTTCG
GGGAAGAATCTGACTGCTCAAATGGTACAATATCCTCCCCAAGTTTGTTT
TTTTGGGCGCAAACTTAGACAGAAAAAAACGCCAAAACGCTGCTCGCCAT
GTGTCCGTGCCGTGATTCCCTGTCAGGTCTCTGGCGTGGAGCGTGTGCAG
GAGGCAATGCGGGCTGCGGAAAGAGCGATCGAGGTGGTGGCTCGCCTCCT
CTCTGGCGGGGGGGCGGTGGCGGCCTCTGCGGCTGCCATGGAGGTGGTGT
CTTCGCGGGTTGCGGACGCCCAGGTGGGTGTACAATTAACAGGAACAACA
CAGGGCGAGGTGCAGGCCGCGTCACCAAGGGTGTAGTAGAGTAGTGATAC
CGTATATGGTGGTAGATAGTGACCCTCCTTTAGATTACAATACCCCCCTG
GACTACAACCCCGTGTCGATAATTGCTATGGAGGTGGTGTCCTCACGGGT
TGCGGATGCACAGGTGGGCTAGGGTTTACGGTTAGGGCTAGGGCAACTAG
CCCTAAGCCTAGCTCAGGTGGGTGTAGCAATAGAGTAGTGATGCCGTATA
GTGCGGCTTCGTCCCCGCCTGCCCCACCTGCATGCCCCACTGTGAGCACA
AGGGACTTCCCTGCGCCTCTTCCCTTTCCTCATCACCCCGCCCCTTTCCT
TCTTTATTTTTTGTTTTCTTTTTGTCCTGTGAGGGGAAGAAGGGCGTCGT
TGAGTCCTGTTTTGGGACGAGCCTTTCGGCATGGGGCCTGGAACTCGCCG
CTTATCTACCACTCAAAATAGAGCAATGGCAGTAGACAATGACCTACCTG
TAGATTACAACACTCCCCTGCATTACAACCCCCTGTCGGTAATTGTCATG
GAGGTGGTATCTTCACGGGGTGCGGACGCCCAGGTCTGTACAGTAGACTA
GTACTTCCAAGTATGTAGTGCAGTGCAGGTCGTACAATGCTAGTCTGTAC
AGTAGTGCTGTTCGTAGCGTCGCCTGTGCTTGAATACCTTGAAGTACTTA
AGCAGTACAGTAGTGCATGTTTCTATACGCGCCTATCCCGTTCGTCCTCT
TCTTCGGCTGCACTTCCTACTCCTCCCTCCTCCTCCTGCTCCTCCTCCTC
TCGCCCCCCCCCCTTGTTGCTGCTCTTCTTCGTCTTCTTCGGATTAATAT
TCGTATTCCTCATCTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
GTGATGTTCACATTCATATTCACCATCTTCTCTTCTTCTTCGTATTCATG
TTCACATTGATATTCTTCATCTTCATCTTCTTCCTCCTCCTCCTCCTCCC
CCGCCACCTCCTCCTCCTCCTCCTCCACCACCACCACCACCACCACCTCC
TCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCATCTTGCCCTCCTTCACCACCAC
CACCACCACCACCACCACCTCCTCCGCTTGCTCTCCTTCACCTTTTCCTC
TATCATCATCATGATCATCACCACCGCGTCGCACCCACCTCTGCAATCCA
TTCCCCACTCACCCGCCCTTGACATGCCCCCCTTTGTTCTCTCGTTTCTC
AGGAGTTGGTGTCTGCGGAGTCTCGGCGCCGGGAGCGTGGGGAGCAGGTG
CGAGGACATGACGCACCTTATGTCTTGGAGACATTACACTACCGTGACAT
TCTGGATCTTTTCTTTGAATGCCTGTCGCACCATATCAACTGGGTCTTGG
AGACATTACATTGCAGTGACATTCTGACTCCTTTCTTTGAGTATCTGTCG
CACCATACCAACCGTGTCTTGGAGACATTACGTTGCAGTGACATTCTGAC
TCTTTTCTTTGAACATGTGTCGCCAAGCGCTTTTCAACTGTTTCTTGGAG
ACATTGCATTACAGTGACGTTCGGACTCTTTTCTTTGAACACCTGTCGCC
GAGCGCTTTTCGAGTACTAGCAAGTAGTGGTATTGCGCTCACAATCGCAA
ATCGGACCGGGCCTTGGTGATATTGCACCAAAGAAATCTCCCGGATATCC
CATCAGGGGCGATTTTTCGCTATATTGCCGTGTGGAGTCTTTCCCCTGGG
GGGATATCCGCAGGTACTGCTTCAGTGTCGAATTAGATCATGTCAGAGTG
CACATCACATCGCATCAATAGCGAAATGGGCCGTGCGTCATCGCTTGGTA
CGTTATCCCGTAGTACGGCATTCGTACTTGGGCGTATGCACACACGGTCC
CCAAACTCTGTTGCTTGTTCCCGAAGTATAGATCGGACACGGAGCTGTTT
TAATGAGCCCCAGGAATCTAAACCCTCCATACTACGGTGCTGCACTCGGG
AACATCAAAACTCAAGCATCCCAAACTACTTTTTCTTGACAGTGATGGAA
TATCTAACCAAATCAACCTACTACGTAGTATTTATCGACAGTACGGATCT
ACTGCACATATCTACTGGTACTGATACTCGATGTTTCATAGTTTGACCCA
CATTAAACCCACACTAAACCCAAGCAGTTAGTAACGCCACCCACAAAATC
AGTCGAGCCCGAGAACTACTGTATCTACTGATGGATATTTCCATCACTGG
TTCTTGGTTGGCAGGAGCGACGCCGCGCACGCCTGCAGCTGGAGAGCTGC
GCCCAGCGGTATGCACACACAGTCCCCAAACTATTACTACTTGGGGCACA
TTAAAACCGCTCAGTGTCCGATCTACACTTTGCGAACATGTACAGCCTGC
CTACAAACTACTGCACTTGGGAAGGTCAAACCTCAACTATCCCAAACTAC
TCATTCTTGGTTTTCGCAGGAGCGACGCCGCGCACGCCTGCAACTGGAGG
GCTGTGCCCAGCGGGCCGCGGCGGCACGGGCGGCCGCCAGGGAACTTTCG
GCCACCATAGCCA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig12:61152..67864+

>mRNA_S-ischiensis_contig12.2513.1 ID=mRNA_S-ischiensis_contig12.2513.1|Name=mRNA_S-ischiensis_contig12.2513.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1296bp|location=Sequence derived from alignment at S-ischiensis_contig12:61152..67864+ (Schizocladia ischiensis KU_0333)
GGCGTGGGCGGGGGGAACGGGGAGCTGCGGCCATCTACGGGGGTAGCGGC
GCTGACCGGGGCAATGTCCGCGGCAGAGCAGGCTCTGGCGGTGGCGAAGA
AGAAGGGCGTGGGCGGGGGGAACGGGGAGCTGCGGCCATCTACGGGGGTA
GCGGCGCTGACCGGGGCAATGTCCGCGGCAGAGCAGGCTCTGGCGGTGGC
GAAGAAGAAGGCCGGTGTGAGCATGGAGGAGTGGCTGGAGTCATCGGCTG
GGGGCGATGGTGTCGGCGGGGGCGGGGCTAAGGGCACGTCTGCCAGCTCC
CAGGCCGGTGTGAGCATGGAGGAGTGGCTGGAGTCATCGGCTGGGGGCGA
TGGTGTCGGCGGGGGCGGGGCTAAGGGCACGTCTGCCAGCTCCCAGGCGG
TGGAAGAGGCAGTGCGGCGGGTGGCCGAAGCAGACGCCATCCTGTCCAAG
GAGAACTCCCGCATGGAGAAGGAGGACAAGGGCCGGGCGGCGGCGCGGGC
GCGGCTCATGGGGCACTCGGATAGGCTGGCCGCCGTGGACGCGCAGGCGG
AAGCCTCCCAGGCGGTGGAAGAGGCAGTGCGGCGGGTGGCCGAAGCAGAC
GCCATCCTGTCCAAGGAGAACTCCCGCATGGAGAAGGAGGACAAGGGCCG
GGCGGCGGCGCGGGCGCGGCTCATGGGGCACTCGGATAGGCTGGCCGCCG
TGGACGCGCAGGCGGAAGCCTCCCAGGTCTCTGGCGTGGAGCGTGTGCAG
GAGGCAATGCGGGCTGCGGAAAGAGCGATCGAGGTGGTGGCTCGCCTCCT
CTCTGGCGGGGGGGCGGTGGCGGCCTCTGCGGCTGCCATGGAGGTGGTGT
CTTCGCGGGTTGCGGACGCCCAGGTCTCTGGCGTGGAGCGTGTGCAGGAG
GCAATGCGGGCTGCGGAAAGAGCGATCGAGGTGGTGGCTCGCCTCCTCTC
TGGCGGGGGGGCGGTGGCGGCCTCTGCGGCTGCCATGGAGGTGGTGTCTT
CGCGGGTTGCGGACGCCCAGGAGTTGGTGTCTGCGGAGTCTCGGCGCCGG
GAGCGTGGGGAGCAGGAGTTGGTGTCTGCGGAGTCTCGGCGCCGGGAGCG
TGGGGAGCAGGAGCGACGCCGCGCACGCCTGCAACTGGAGGGCTGTGCCC
AGCGGGCCGCGGCGGCACGGGCGGCCGCCAGGGAACTTTCGGCCACCATA
GCCGAGCGACGCCGCGCACGCCTGCAACTGGAGGGCTGTGCCCAGCGGGC
CGCGGCGGCACGGGCGGCCGCCAGGGAACTTTCGGCCACCATAGCC
back to top