mRNA_S-ischiensis_contig12.2508.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2508.1
Unique NamemRNA_S-ischiensis_contig12.2508.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:11342..11677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size338
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.7364032-CDS-S-ischiensis_contig12:11341..116771622815637.7364032-CDS-S-ischiensis_contig12:11341..11677Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 11342..11677 +
1695739819.5668972-CDS-S-ischiensis_contig12:11341..116771695739819.5668972-CDS-S-ischiensis_contig12:11341..11677Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 11342..11677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2508.1prot_S-ischiensis_contig12.2508.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 11342..11677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2508.1

>prot_S-ischiensis_contig12.2508.1 ID=prot_S-ischiensis_contig12.2508.1|Name=mRNA_S-ischiensis_contig12.2508.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
MSRRSCSFRRCRSSCSRFFLAVAHRFRRARMLVATRRRATFPISFKCCSR
TLRARRFSRLSGAPRAARVTTNTMCTHRSTKSRSSSRADAASCSAPSRPF
NAAHTGCSSATS
back to top

mRNA from alignment at S-ischiensis_contig12:11342..11677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2508.1 ID=mRNA_S-ischiensis_contig12.2508.1|Name=mRNA_S-ischiensis_contig12.2508.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=336bp|location=Sequence derived from alignment at S-ischiensis_contig12:11342..11677+ (Schizocladia ischiensis KU_0333)
ATGAGCAGGAGGTCATGCAGCTTTCGCCGCTGTCGCTCAAGCTGTTCACG
GTTCTTTTTGGCCGTTGCCCATCGCTTCAGACGTGCAAGAATGCTGGTGG
CCACGAGGCGGCGGGCGACCTTCCCAATCTCTTTCAAGTGCTGTTCCAGG
ACGCTCAGAGCCCGGCGCTTCTCGAGGCTCAGTGGTGCTCCACGAGCAGC
CCGAGTGACCACAAACACAATGTGTACACACAGGTCCACCAAATCGCGCA
GTTCTTCCCGCGCGGATGCCGCGTCTTGCTCAGCACCAAGTAGGCCCTTC
AATGCGGCACATACCGGGTGCAGTAGCGCCACGTCA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig12:11342..11677+

>mRNA_S-ischiensis_contig12.2508.1 ID=mRNA_S-ischiensis_contig12.2508.1|Name=mRNA_S-ischiensis_contig12.2508.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig12:11342..11677+ (Schizocladia ischiensis KU_0333)
ATGAGCAGGAGGTCATGCAGCTTTCGCCGCTGTCGCTCAAGCTGTTCACG
GTTCTTTTTGGCCGTTGCCCATCGCTTCAGACGTGCAAGAATGCTGGTGG
CCACGAGGCGGCGGGCGACCTTCCCAATCTCTTTCAAGTGCTGTTCCAGG
ACGCTCAGAGCCCGGCGCTTCTCGAGGCTCAGTGGTGCTCCACGAGCAGC
CCGAGTGACCACAAACACAATGTGTACACACAGGTCCACCAAATCGCGCA
GTTCTTCCCGCGCGGATGCCGCGTCTTGCTCAGCACCAAGTAGGCCCTTC
AATGCGGCACATACCGGGTGCAGTAGCGCCACGTCAATGAGCAGGAGGTC
ATGCAGCTTTCGCCGCTGTCGCTCAAGCTGTTCACGGTTCTTTTTGGCCG
TTGCCCATCGCTTCAGACGTGCAAGAATGCTGGTGGCCACGAGGCGGCGG
GCGACCTTCCCAATCTCTTTCAAGTGCTGTTCCAGGACGCTCAGAGCCCG
GCGCTTCTCGAGGCTCAGTGGTGCTCCACGAGCAGCCCGAGTGACCACAA
ACACAATGTGTACACACAGGTCCACCAAATCGCGCAGTTCTTCCCGCGCG
GATGCCGCGTCTTGCTCAGCACCAAGTAGGCCCTTCAATGCGGCACATAC
CGGGTGCAGTAGCGCCACGTCA
back to top