mRNA_S-ischiensis_contig118.2491.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig118.2491.1
Unique NamemRNA_S-ischiensis_contig118.2491.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig118.2491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig118contigS-ischiensis_contig118:42389..42940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig118.2491.1prot_S-ischiensis_contig118.2491.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig118 42532..42843 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.3406193-UTR-S-ischiensis_contig118:42388..425311622815629.3406193-UTR-S-ischiensis_contig118:42388..42531Schizocladia ischiensis KU_0333UTRS-ischiensis_contig118 42389..42531 +
1695739814.4894788-UTR-S-ischiensis_contig118:42388..425311695739814.4894788-UTR-S-ischiensis_contig118:42388..42531Schizocladia ischiensis KU_0333UTRS-ischiensis_contig118 42389..42531 +
1622815629.3626878-UTR-S-ischiensis_contig118:42843..429401622815629.3626878-UTR-S-ischiensis_contig118:42843..42940Schizocladia ischiensis KU_0333UTRS-ischiensis_contig118 42844..42940 +
1695739814.508096-UTR-S-ischiensis_contig118:42843..429401695739814.508096-UTR-S-ischiensis_contig118:42843..42940Schizocladia ischiensis KU_0333UTRS-ischiensis_contig118 42844..42940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.3517773-CDS-S-ischiensis_contig118:42531..428431622815629.3517773-CDS-S-ischiensis_contig118:42531..42843Schizocladia ischiensis KU_0333CDSS-ischiensis_contig118 42532..42843 +
1695739814.4982774-CDS-S-ischiensis_contig118:42531..428431695739814.4982774-CDS-S-ischiensis_contig118:42531..42843Schizocladia ischiensis KU_0333CDSS-ischiensis_contig118 42532..42843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig118.2491.1

>prot_S-ischiensis_contig118.2491.1 ID=prot_S-ischiensis_contig118.2491.1|Name=mRNA_S-ischiensis_contig118.2491.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=104bp
MWMLCLHTSRCILLKSILQSMYIKGSIQLCQPWAGETIGRPCSQTRPGCR
RKAGRHMAWRGKQGQVSTPKAAHESGRQTTTVLYSTGNHSQYPLFMYEYC
SVV*
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mRNA from alignment at S-ischiensis_contig118:42389..42940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig118.2491.1 ID=mRNA_S-ischiensis_contig118.2491.1|Name=mRNA_S-ischiensis_contig118.2491.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=552bp|location=Sequence derived from alignment at S-ischiensis_contig118:42389..42940+ (Schizocladia ischiensis KU_0333)
CGTATGTATCTCGACCCTATGCCGAGTCCCAAGCAGTTGTTCCTGTCGGC
CTATGCCGAGTCCCAAGCAGTTGTTCCTGTCCGACGACATATGTGGATAT
ATATATATATGTGTACTCACGTGGTGCTTGCCGTAGTCCACATATGTGGA
TGCTTTGTCTTCATACTTCCAGGTGCATACTACTGAAAAGCATACTTCAA
AGCATGTACATTAAGGGAAGCATACAACTATGCCAACCGTGGGCCGGTGA
GACTATTGGTAGGCCGTGCTCCCAGACGCGCCCTGGATGCAGGCGGAAGG
CAGGCAGGCATATGGCCTGGAGAGGCAAGCAAGGCCAAGTGTCAACCCCA
AAGGCAGCACATGAATCGGGCAGGCAAACAACCACCGTACTGTACAGTAC
CGGGAATCACTCACAGTACCCACTGTTCATGTACGAGTACTGCAGTGTGG
TATAGTAGGTTACTCGGGACATATACCGCTACAAAACTGGGATGCCTCCC
AAGGCCAGGGTAATTCAGTATAGTATGAGTACATCGAAACCCGGCCGAAC
AC
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Coding sequence (CDS) from alignment at S-ischiensis_contig118:42389..42940+

>mRNA_S-ischiensis_contig118.2491.1 ID=mRNA_S-ischiensis_contig118.2491.1|Name=mRNA_S-ischiensis_contig118.2491.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=624bp|location=Sequence derived from alignment at S-ischiensis_contig118:42389..42940+ (Schizocladia ischiensis KU_0333)
ATGTGGATGCTTTGTCTTCATACTTCCAGGTGCATACTACTGAAAAGCAT
ACTTCAAAGCATGTACATTAAGGGAAGCATACAACTATGCCAACCGTGGG
CCGGTGAGACTATTGGTAGGCCGTGCTCCCAGACGCGCCCTGGATGCAGG
CGGAAGGCAGGCAGGCATATGGCCTGGAGAGGCAAGCAAGGCCAAGTGTC
AACCCCAAAGGCAGCACATGAATCGGGCAGGCAAACAACCACCGTACTGT
ACAGTACCGGGAATCACTCACAGTACCCACTGTTCATGTACGAGTACTGC
AGTGTGGTATAGATGTGGATGCTTTGTCTTCATACTTCCAGGTGCATACT
ACTGAAAAGCATACTTCAAAGCATGTACATTAAGGGAAGCATACAACTAT
GCCAACCGTGGGCCGGTGAGACTATTGGTAGGCCGTGCTCCCAGACGCGC
CCTGGATGCAGGCGGAAGGCAGGCAGGCATATGGCCTGGAGAGGCAAGCA
AGGCCAAGTGTCAACCCCAAAGGCAGCACATGAATCGGGCAGGCAAACAA
CCACCGTACTGTACAGTACCGGGAATCACTCACAGTACCCACTGTTCATG
TACGAGTACTGCAGTGTGGTATAG
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