mRNA_S-ischiensis_contig116.2480.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig116.2480.1
Unique NamemRNA_S-ischiensis_contig116.2480.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig116.2480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig116contigS-ischiensis_contig116:82725..83915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.9572618-CDS-S-ischiensis_contig116:82724..828441622815627.9572618-CDS-S-ischiensis_contig116:82724..82844Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 82725..82844 -
1695739813.7248135-CDS-S-ischiensis_contig116:82724..828441695739813.7248135-CDS-S-ischiensis_contig116:82724..82844Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 82725..82844 -
1622815627.9708598-CDS-S-ischiensis_contig116:83804..839151622815627.9708598-CDS-S-ischiensis_contig116:83804..83915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 83805..83915 -
1695739813.7333415-CDS-S-ischiensis_contig116:83804..839151695739813.7333415-CDS-S-ischiensis_contig116:83804..83915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 83805..83915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig116.2480.1prot_S-ischiensis_contig116.2480.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig116 82725..83915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig116.2480.1

>prot_S-ischiensis_contig116.2480.1 ID=prot_S-ischiensis_contig116.2480.1|Name=mRNA_S-ischiensis_contig116.2480.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
EEAAGAGAQCVEVELEAPSPEVAARWLGLLQRGVGLQVESLYELLPQGRP
SLKTVDNNSASQRAPAEGEEAAVDKGG
back to top

mRNA from alignment at S-ischiensis_contig116:82725..83915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig116.2480.1 ID=mRNA_S-ischiensis_contig116.2480.1|Name=mRNA_S-ischiensis_contig116.2480.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1191bp|location=Sequence derived from alignment at S-ischiensis_contig116:82725..83915- (Schizocladia ischiensis KU_0333)
GAGGAGGCGGCGGGGGCGGGGGCGCAGTGTGTGGAGGTGGAACTGGAGGC
GCCCTCGCCGGAGGTGGCTGCCAGGTGGCTCGGCCTGCTGCAGAGGGGTG
TGGGCCTGCAGGTGTGTGTGTGTATGTGTGTGTGTGCGTGTGTGTGTGTG
TGCGCGCGCGCGTGTGTTTGTGTTTTGTGTATCTGACACTATTTTTTTGG
GTTGGTGGGGGGCGTTCGGCATGGCATGTCGGAAGTCGGTTGACCAATGG
GAAATGCGGATATTGGTGGTGGTCTAGAGCTCTAGCGGTGTGCGAAGTGT
CACAGTGAGATTCGATGTGGTTGGAGACCTAAATCCGAAAAGCCGATATT
TCAGCCAATTTTGAGGACCCAAGCCCGGGACATCCTCCCTGTGAGTTTTT
TTTTGCTGAAAACATGTCTTCAAAGCGCTCTAAGGATGCAGGCATGCCAT
ATGGCCAAAAGTGTGGAGTTTCTCCCCACCTAATTGTTGGTGAAGAATCC
ATGTGAACATTAGGAATCAAAATCGGAGCTCTGCAGCCTGAGATATCGGG
CTTCGTTTTGGCACCTCCTGACGTGGCCACATCGGCACAATGCTGGTTGC
TTTCGTTCGAGGCCCAAAATATCGAGAAGGACGACGATTTGAGTCATGCG
GCAGAGCCAAACGATCAGAGCAACTGTGAGCTTTGAATCCGCCGTCAGAT
TTGTTCGTCCGAGGTCCCGCTCCAAGACAGGTCCCAACAGACTTTCCGAA
CGGAGGAAGCGCACGTATGTGAGCACTGTACATGCTTCTATCCGCTTACT
GAAGGGTGCAGAGGTAGGATGCATCCCGGGCGAGTCTCCACTCGTTGTCT
TCTTGTCTTGCGACGTAGCCTTGCGCGCATTGCCGACAGCCCGAAGTCGA
AACTTCGGGTTTGCCCTCCGACAGGAGTGGCTATTTAGCCATGGACTCTC
GCTTCCCGATTAGGCCGGGACGGAGCATGCCGGGTTTGCACCGGCCAGGT
GGCCAAGCCCGGAATGACGCGCGCGAATAGGTAACAAACACACCGGGACA
CAAAAAAAAAACCGCTCGCAGGTGGAGTCGCTGTATGAGCTCCTGCCGCA
GGGCCGGCCCTCGCTCAAGACCGTAGATAACAACAGCGCCTCGCAGCGAG
CGCCGGCGGAGGGGGAGGAGGCGGCGGTGGATAAGGGGGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig116:82725..83915-

>mRNA_S-ischiensis_contig116.2480.1 ID=mRNA_S-ischiensis_contig116.2480.1|Name=mRNA_S-ischiensis_contig116.2480.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=462bp|location=Sequence derived from alignment at S-ischiensis_contig116:82725..83915- (Schizocladia ischiensis KU_0333)
GAGGAGGCGGCGGGGGCGGGGGCGCAGTGTGTGGAGGTGGAACTGGAGGC
GCCCTCGCCGGAGGTGGCTGCCAGGTGGCTCGGCCTGCTGCAGAGGGGTG
TGGGCCTGCAGGAGGAGGCGGCGGGGGCGGGGGCGCAGTGTGTGGAGGTG
GAACTGGAGGCGCCCTCGCCGGAGGTGGCTGCCAGGTGGCTCGGCCTGCT
GCAGAGGGGTGTGGGCCTGCAGGTGGAGTCGCTGTATGAGCTCCTGCCGC
AGGGCCGGCCCTCGCTCAAGACCGTAGATAACAACAGCGCCTCGCAGCGA
GCGCCGGCGGAGGGGGAGGAGGCGGCGGTGGATAAGGGGGGCGTGGAGTC
GCTGTATGAGCTCCTGCCGCAGGGCCGGCCCTCGCTCAAGACCGTAGATA
ACAACAGCGCCTCGCAGCGAGCGCCGGCGGAGGGGGAGGAGGCGGCGGTG
GATAAGGGGGGC
back to top